View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9650_low_6 (Length: 452)

Name: NF9650_low_6
Description: NF9650
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9650_low_6
NF9650_low_6
[»] chr4 (27 HSPs)
chr4 (320-448)||(7052186-7052315)
chr4 (214-321)||(7013091-7013198)
chr4 (205-321)||(7038756-7038872)
chr4 (212-321)||(7003649-7003758)
chr4 (327-448)||(7046184-7046306)
chr4 (322-432)||(7026372-7026483)
chr4 (320-401)||(6993665-6993746)
chr4 (320-395)||(7003783-7003858)
chr4 (8-69)||(7003468-7003529)
chr4 (219-321)||(6993538-6993640)
chr4 (219-321)||(7046050-7046152)
chr4 (324-382)||(7019566-7019624)
chr4 (323-395)||(7038900-7038972)
chr4 (88-161)||(6993388-6993460)
chr4 (7-65)||(6993282-6993340)
chr4 (7-69)||(7012841-7012903)
chr4 (262-321)||(7052102-7052161)
chr4 (93-142)||(7045994-7046043)
chr4 (274-321)||(7026298-7026345)
chr4 (95-161)||(7051910-7051977)
chr4 (263-321)||(7019479-7019537)
chr4 (323-382)||(7013226-7013285)
chr4 (112-161)||(7003567-7003617)
chr4 (7-65)||(7026122-7026180)
chr4 (7-69)||(7045883-7045945)
chr4 (7-65)||(7051797-7051855)
chr4 (9-65)||(7019318-7019374)
[»] chr3 (1 HSPs)
chr3 (336-377)||(46183929-46183970)


Alignment Details
Target: chr4 (Bit Score: 102; Significance: 2e-50; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 320 - 448
Target Start/End: Original strand, 7052186 - 7052315
Alignment:
Q  320 ggatcatcggagcgactggaaactagttcaccatactcatcaatttcttaggaaggtatgttcctaatgctaactaaggtgcggacggg-actgccttgc 418  Q
    |||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||    
T  7052186 ggatcaccggagcgactggaaactagtttaccatactcatcaatttcttaggaaggtatgttcctaatgctaactaaggtgcagacgggcactgccttgc 7052285  T
Q  419 ttgatagagtttctcttacaactccaaact 448  Q
    |||||||||||||| |||||||| ||||||    
T  7052286 ttgatagagtttcttttacaacttcaaact 7052315  T

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Target: chr4; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 214 - 321
Target Start/End: Original strand, 7013091 - 7013198
Alignment:
Q  214 tttcttttcatgattttgttatcggaaggtgatttagtggtagtattgttaatgatcttttggtcagctatgcagcattatttttgtagatttgccactt 313  Q
    ||||||||||||||||||||||  |||||||||||| |||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  7013091 tttcttttcatgattttgttatttgaaggtgatttactggtagtaatgttaatgatcttttgttcagctatgcagcattatttttgtagatttgccactt 7013190  T
Q  314 ggaactgg 321  Q
    ||||||||    
T  7013191 ggaactgg 7013198  T

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Target: chr4; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 205 - 321
Target Start/End: Original strand, 7038756 - 7038872
Alignment:
Q  205 ttttatctgtttcttttcatgattttgttatcggaaggtgatttagtggtagtattgttaatgatcttttggtcagctatgcagcattatttttgtagat 304  Q
    |||||| ||||||||||||||||||||||||   ||||||||||| |||||||| |||||||||||||||||||||| || |||||||||||||||||||    
T  7038756 ttttatatgtttcttttcatgattttgttattcaaaggtgatttactggtagtaatgttaatgatcttttggtcagcgatccagcattatttttgtagat 7038855  T
Q  305 ttgccacttggaactgg 321  Q
    |||||||||||||||||    
T  7038856 ttgccacttggaactgg 7038872  T

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Target: chr4; HSP #4
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 212 - 321
Target Start/End: Original strand, 7003649 - 7003758
Alignment:
Q  212 tgtttcttttcatgattttgttatcggaaggtgatttagtggtagtattgttaatgatcttttggtcagctatgcagcattatttttgtagatttgccac 311  Q
    ||||||||||| ||||||  |||| ||||||||||||| | |||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  7003649 tgtttcttttcctgatttcattattggaaggtgatttactcgtagtaatgttaatgatcttttgggcagctatgcagcattatttttgtagatttgccac 7003748  T
Q  312 ttggaactgg 321  Q
    ||||||||||    
T  7003749 ttggaactgg 7003758  T

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Target: chr4; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 327 - 448
Target Start/End: Original strand, 7046184 - 7046306
Alignment:
Q  327 cggagcgactggaaactagttcaccatactcatcaatttcttaggaaggtatgttcctaatgctaactaaggtgcggacggg-actgccttgcttgatag 425  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| ||||| |||||| ||| || ||||| ||||    
T  7046184 cggagcgactggaaactagttcacaatactcatcaatttcttaggaaggtatgttcgtaatgctaactagggtgcagacgggaacttccgtgcttcatag 7046283  T
Q  426 agtttctcttacaactccaaact 448  Q
    ||||||| | |||||| ||||||    
T  7046284 agtttctttcacaacttcaaact 7046306  T

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Target: chr4; HSP #6
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 322 - 432
Target Start/End: Original strand, 7026372 - 7026483
Alignment:
Q  322 atcatcggagcgactggaaactagttcaccatactcatcaatttcttaggaaggtatgttcctaatgctaactaaggtgcggacggg-actgccttgctt 420  Q
    |||| ||||||||||||||||| |||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||| |||||| ||| || |||||    
T  7026372 atcaccggagcgactggaaacttgttcacaatacttatcaatttcttaggaaggtatgttcctaatgctaactagggtgcagacgggcacttccgtgctt 7026471  T
Q  421 gatagagtttct 432  Q
    ||||||||||||    
T  7026472 gatagagtttct 7026483  T

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Target: chr4; HSP #7
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 320 - 401
Target Start/End: Original strand, 6993665 - 6993746
Alignment:
Q  320 ggatcatcggagcgactggaaactagttcaccatactcatcaatttcttaggaaggtatgttcctaatgctaactaaggtgc 401  Q
    |||||| ||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||| |||||    
T  6993665 ggatcaccggagcgactggaaactagttcaccatacttttcaatttcttaggaaggtatgttcctaatgctaactagggtgc 6993746  T

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Target: chr4; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 320 - 395
Target Start/End: Original strand, 7003783 - 7003858
Alignment:
Q  320 ggatcatcggagcgactggaaactagttcaccatactcatcaatttcttaggaaggtatgttcctaatgctaacta 395  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | ||||| ||||    
T  7003783 ggatcatcggagcgactggaaactagttcaccaaactcatcaatttcttaggaaggtatgttcattatgctcacta 7003858  T

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Target: chr4; HSP #9
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 8 - 69
Target Start/End: Original strand, 7003468 - 7003529
Alignment:
Q  8 ataggtccagttgcatttgaaatcaaggagtacgatgggagcatgcccggtttggtctcaag 69  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  7003468 ataggtccagttgcatttgaaatcaaggagtacgatgggagtatgcccggtttggtctcaag 7003529  T

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Target: chr4; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 219 - 321
Target Start/End: Original strand, 6993538 - 6993640
Alignment:
Q  219 tttcatgattttgttatcggaaggtgatttagtggtagtattgttaatgatcttttggtcagctatgcagcattatttttgtagatttgccacttggaac 318  Q
    |||||||||||  |||| ||||||| |||||  ||||||| || |||||| |||||||||||||||||||||||||||||||  ||||||| ||||||||    
T  6993538 tttcatgatttcattattggaaggtcatttaccggtagtaatgctaatgaacttttggtcagctatgcagcattatttttgttaatttgccgcttggaac 6993637  T
Q  319 tgg 321  Q
    |||    
T  6993638 tgg 6993640  T

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Target: chr4; HSP #11
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 219 - 321
Target Start/End: Original strand, 7046050 - 7046152
Alignment:
Q  219 tttcatgattttgttatcggaaggtgatttagtggtagtattgttaatgatcttttggtcagctatgcagcattatttttgtagatttgccacttggaac 318  Q
    |||||||||||  |||| ||||| || |||| ||| |||| | |||||||| |||| |||||||||||| ||||||||||||||||||||||||||||||    
T  7046050 tttcatgatttcattattggaagatgttttactggaagtaattttaatgatatttttgtcagctatgcaacattatttttgtagatttgccacttggaac 7046149  T
Q  319 tgg 321  Q
    |||    
T  7046150 tgg 7046152  T

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Target: chr4; HSP #12
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 324 - 382
Target Start/End: Original strand, 7019566 - 7019624
Alignment:
Q  324 catcggagcgactggaaactagttcaccatactcatcaatttcttaggaaggtatgttc 382  Q
    ||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  7019566 catcgaagcgactggaaattagttcaccatactcatcaatttcttaggaaggtatgttc 7019624  T

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Target: chr4; HSP #13
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 323 - 395
Target Start/End: Original strand, 7038900 - 7038972
Alignment:
Q  323 tcatcggagcgactggaaactagttcaccatactcatcaatttcttaggaaggtatgttcctaatgctaacta 395  Q
    |||||| || ||||||||| ||||||||||| |||||||||||||||||||||||||||| | ||||||||||    
T  7038900 tcatcgaagtgactggaaattagttcaccatgctcatcaatttcttaggaaggtatgttcattatgctaacta 7038972  T

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Target: chr4; HSP #14
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 88 - 161
Target Start/End: Original strand, 6993388 - 6993460
Alignment:
Q  88 aacaatgatttcatttacttaagttaatccaaaatttgtactaacaagaactatg-tttatatcagtcatgtcat 161  Q
    |||| ||||||||||||||||||||||||||||||||||||||  |||||||||| ||||||| |||||||||||    
T  6993388 aacattgatttcatttacttaagttaatccaaaatttgtacta--aagaactatgatttatattagtcatgtcat 6993460  T

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Target: chr4; HSP #15
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 7 - 65
Target Start/End: Original strand, 6993282 - 6993340
Alignment:
Q  7 aataggtccagttgcatttgaaatcaaggagtacgatgggagcatgcccggtttggtct 65  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||  |||||||||    
T  6993282 aataggtccagttgcatttgaaatcaaggagtacgatgggagcgtgcctagtttggtct 6993340  T

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Target: chr4; HSP #16
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 7 - 69
Target Start/End: Original strand, 7012841 - 7012903
Alignment:
Q  7 aataggtccagttgcatttgaaatcaaggagtacgatgggagcatgcccggtttggtctcaag 69  Q
    ||||||||||||||||||||||| ||||||||||||||||||| ||||  |||||||||||||    
T  7012841 aataggtccagttgcatttgaaaacaaggagtacgatgggagcgtgcctagtttggtctcaag 7012903  T

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Target: chr4; HSP #17
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 262 - 321
Target Start/End: Original strand, 7052102 - 7052161
Alignment:
Q  262 ttaatgatcttttggtcagctatgcagcattatttttgtagatttgccacttggaactgg 321  Q
    |||||||| |||||| ||| ||||||||||||||||||||||| ||||||||||||||||    
T  7052102 ttaatgatattttgggcagatatgcagcattatttttgtagatctgccacttggaactgg 7052161  T

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Target: chr4; HSP #18
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 93 - 142
Target Start/End: Original strand, 7045994 - 7046043
Alignment:
Q  93 tgatttcatttacttaagttaatccaaaatttgtactaacaagaactatg 142  Q
    |||||||||||||||||||||||| |||||||||||||| ||||||||||    
T  7045994 tgatttcatttacttaagttaatctaaaatttgtactaataagaactatg 7046043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 274 - 321
Target Start/End: Original strand, 7026298 - 7026345
Alignment:
Q  274 tggtcagctatgcagcattatttttgtagatttgccacttggaactgg 321  Q
    ||||||||||| || |||||||||||||||||||||||||||||||||    
T  7026298 tggtcagctatccaacattatttttgtagatttgccacttggaactgg 7026345  T

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Target: chr4; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 95 - 161
Target Start/End: Original strand, 7051910 - 7051977
Alignment:
Q  95 atttcatttacttaagttaatccaaaatttgtactaacaagaactatg-tttatatcagtcatgtcat 161  Q
    |||||||||||||||||||||||||||||||||||    ||||||||| ||||||| |||||||||||    
T  7051910 atttcatttacttaagttaatccaaaatttgtactggtgagaactatgatttatattagtcatgtcat 7051977  T

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Target: chr4; HSP #21
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 263 - 321
Target Start/End: Original strand, 7019479 - 7019537
Alignment:
Q  263 taatgatcttttggtcagctatgcagcattatttttgtagatttgccacttggaactgg 321  Q
    |||| |||| |||||||||||| ||||||||| ||||||||||||||||||||| ||||    
T  7019479 taattatctattggtcagctatccagcattatgtttgtagatttgccacttggatctgg 7019537  T

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Target: chr4; HSP #22
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 323 - 382
Target Start/End: Original strand, 7013226 - 7013285
Alignment:
Q  323 tcatcggagcgactggaaactagttcaccatactcatcaatttcttaggaaggtatgttc 382  Q
    |||||| || ||||||||| |||||| | || ||||||||||||||||||||||||||||    
T  7013226 tcatcgaagtgactggaaattagttcgcgatgctcatcaatttcttaggaaggtatgttc 7013285  T

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Target: chr4; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 112 - 161
Target Start/End: Original strand, 7003567 - 7003617
Alignment:
Q  112 taatccaaaatttgtactaacaagaactatg-tttatatcagtcatgtcat 161  Q
    ||||||||||||||| |||| |||||||||| |||||||||||||||||||    
T  7003567 taatccaaaatttgttctaataagaactatgatttatatcagtcatgtcat 7003617  T

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Target: chr4; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 7 - 65
Target Start/End: Original strand, 7026122 - 7026180
Alignment:
Q  7 aataggtccagttgcatttgaaatcaaggagtacgatgggagcatgcccggtttggtct 65  Q
    |||||||||| ||||||||||||||||||||||| | |||||| ||||  |||||||||    
T  7026122 aataggtccatttgcatttgaaatcaaggagtacaacgggagcgtgcctagtttggtct 7026180  T

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Target: chr4; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 7 - 69
Target Start/End: Original strand, 7045883 - 7045945
Alignment:
Q  7 aataggtccagttgcatttgaaatcaaggagtacgatgggagcatgcccggtttggtctcaag 69  Q
    |||||||||| ||||||| ||||||||||||||| | |||||| ||||  |||||||||||||    
T  7045883 aataggtccatttgcattcgaaatcaaggagtacaacgggagcttgcctagtttggtctcaag 7045945  T

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Target: chr4; HSP #26
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 7 - 65
Target Start/End: Original strand, 7051797 - 7051855
Alignment:
Q  7 aataggtccagttgcatttgaaatcaaggagtacgatgggagcatgcccggtttggtct 65  Q
    |||||||||| |||||||||||||||||||||| || |||||| ||||  |||||||||    
T  7051797 aataggtccatttgcatttgaaatcaaggagtatgacgggagcgtgcctagtttggtct 7051855  T

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Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 9 - 65
Target Start/End: Original strand, 7019318 - 7019374
Alignment:
Q  9 taggtccagttgcatttgaaatcaaggagtacgatgggagcatgcccggtttggtct 65  Q
    |||||||| ||||||||||||||||||||||| | |||||  ||||  |||||||||    
T  7019318 taggtccatttgcatttgaaatcaaggagtacaacgggagtgtgcctagtttggtct 7019374  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 336 - 377
Target Start/End: Complemental strand, 46183970 - 46183929
Alignment:
Q  336 tggaaactagttcaccatactcatcaatttcttaggaaggta 377  Q
    ||||| ||||||||| || |||||||||||||||||||||||    
T  46183970 tggaagctagttcacaatgctcatcaatttcttaggaaggta 46183929  T

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