View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9650_low_9 (Length: 338)
Name: NF9650_low_9
Description: NF9650
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9650_low_9 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 15 - 320
Target Start/End: Complemental strand, 48133838 - 48133523
Alignment:
| Q |
15 |
taagaaaatgttgaaaccacgtttcagcctttaaacc-----------tgggaaaacgctgtgccaaagaggtactcaatctatttgttggatgatattg |
103 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||| |||||||||||| ||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
48133838 |
taagaaaatgttgaaaccacgtttcagcttttaaaccgccgtttgagatgggaaaacgctatgccaaacaggtactcaatctatttgttggatgatattg |
48133739 |
T |
|
| Q |
104 |
agaaatatgtgcttaccatatgagttttgaccaagtatggttcaagtttgtgnnnnnnnnttgtgaaagtaagggtggaaccaccaatatgtatgacgga |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48133738 |
agaaatatgtgcttaccatatgagttttgaccaagtatggttcaagtttgtgaaaaaaa-ttgtgaaagtaagggtggaaccaccaatatgtatgacgga |
48133640 |
T |
|
| Q |
204 |
aaaagattcagcttctatgagctttagtgttttgaatgactatcttttgtgtttctgcaaaagggaagacttataaccatgacttgagcctttctaattg |
303 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48133639 |
aaaagattcagcttctatgagctttagtgttttgaatgactatcttttgtgtttctgcaaaagggaagacttataaccatgacttgagcctttctaattg |
48133540 |
T |
|
| Q |
304 |
aaagtacatgagcattg |
320 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
48133539 |
aaagtacatgagcattg |
48133523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University