View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9651_high_10 (Length: 222)

Name: NF9651_high_10
Description: NF9651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9651_high_10
NF9651_high_10
[»] chr7 (4 HSPs)
chr7 (16-216)||(18660193-18660392)
chr7 (16-74)||(21132031-21132089)
chr7 (16-79)||(21113071-21113134)
chr7 (142-182)||(30531570-30531610)
[»] chr4 (5 HSPs)
chr4 (16-79)||(39130642-39130705)
chr4 (142-182)||(25669824-25669864)
chr4 (142-182)||(27117208-27117248)
chr4 (150-182)||(28232093-28232125)
chr4 (142-182)||(32973156-32973196)
[»] chr3 (2 HSPs)
chr3 (143-182)||(48505083-48505122)
chr3 (143-182)||(45941117-45941156)
[»] chr2 (5 HSPs)
chr2 (143-184)||(4379288-4379329)
chr2 (149-182)||(11967112-11967145)
chr2 (151-184)||(43402635-43402668)
chr2 (142-182)||(26005819-26005859)
chr2 (142-182)||(33145649-33145689)
[»] chr6 (1 HSPs)
chr6 (142-172)||(20864672-20864702)
[»] chr1 (1 HSPs)
chr1 (142-182)||(43491365-43491405)


Alignment Details
Target: chr7 (Bit Score: 169; Significance: 8e-91; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 16 - 216
Target Start/End: Original strand, 18660193 - 18660392
Alignment:
Q  16 catcaagcaagaggatgttacctgtgtttaagaggaaaagctttgagtgcttacctgttggaaaatagacgtagaagatcaggaaatcatatagctagaa 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  18660193 catcaagcaagaggatgttacctgtgtttaagaggaaaagctttgagtgcttacctgttggaaaatagacgaagaagatcaggaaatcatatagctagaa 18660292  T
Q  116 tgataacatttattattgatagctcgatattaagtttttatattgggtctaactcattcttacaaaatcaggatatcagtttttatattgagtataatct 215  Q
    |||||||||||||||||||||||  ||||||||||||||||||| ||||||||||||||||||||||| | ||||||||||||||||||||||| |||||    
T  18660293 tgataacatttattattgatagccagatattaagtttttatatt-ggtctaactcattcttacaaaattatgatatcagtttttatattgagtaaaatct 18660391  T

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Target: chr7; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 16 - 74
Target Start/End: Original strand, 21132031 - 21132089
Alignment:
Q  16 catcaagcaagaggatgttacctgtgtttaagaggaaaagctttgagtgcttacctgtt 74  Q
    ||||||||||||||||||||||  ||||||||||||||||||||||| |||||||||||    
T  21132031 catcaagcaagaggatgttaccattgtttaagaggaaaagctttgagagcttacctgtt 21132089  T

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Target: chr7; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 16 - 79
Target Start/End: Original strand, 21113071 - 21113134
Alignment:
Q  16 catcaagcaagaggatgttacctgtgtttaagaggaaaagctttgagtgcttacctgttggaaa 79  Q
    |||| ||||||| |||||||||||||||||||||||||||||||||||  |||||||| |||||    
T  21113071 catcgagcaagatgatgttacctgtgtttaagaggaaaagctttgagtttttacctgtcggaaa 21113134  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 182
Target Start/End: Original strand, 30531570 - 30531610
Alignment:
Q  142 atattaagtttttatattgggtctaactcattcttacaaaa 182  Q
    |||||| ||||||||||||||||||| |||| |||||||||    
T  30531570 atattaggtttttatattgggtctaagtcatccttacaaaa 30531610  T

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Target: chr4 (Bit Score: 44; Significance: 3e-16; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 16 - 79
Target Start/End: Complemental strand, 39130705 - 39130642
Alignment:
Q  16 catcaagcaagaggatgttacctgtgtttaagaggaaaagctttgagtgcttacctgttggaaa 79  Q
    |||||||||| ||||| |||||||||||||||||| ||||||||||| ||||||||||| ||||    
T  39130705 catcaagcaaaaggatattacctgtgtttaagagggaaagctttgagagcttacctgtttgaaa 39130642  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 182
Target Start/End: Complemental strand, 25669864 - 25669824
Alignment:
Q  142 atattaagtttttatattgggtctaactcattcttacaaaa 182  Q
    ||||||||||||||||| ||| |||||||||||||||||||    
T  25669864 atattaagtttttatatagggcctaactcattcttacaaaa 25669824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 182
Target Start/End: Original strand, 27117208 - 27117248
Alignment:
Q  142 atattaagtttttatattgggtctaactcattcttacaaaa 182  Q
    |||||| ||||||||| |||||||||||||| |||||||||    
T  27117208 atattaggtttttataatgggtctaactcatccttacaaaa 27117248  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 182
Target Start/End: Original strand, 28232093 - 28232125
Alignment:
Q  150 tttttatattgggtctaactcattcttacaaaa 182  Q
    ||||||||||||||||||||||| |||||||||    
T  28232093 tttttatattgggtctaactcatccttacaaaa 28232125  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 182
Target Start/End: Complemental strand, 32973196 - 32973156
Alignment:
Q  142 atattaagtttttatattgggtctaactcattcttacaaaa 182  Q
    |||||| ||||||||||| |||||||||||| |||||||||    
T  32973196 atattaggtttttatatttggtctaactcatccttacaaaa 32973156  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 143 - 182
Target Start/End: Complemental strand, 48505122 - 48505083
Alignment:
Q  143 tattaagtttttatattgggtctaactcattcttacaaaa 182  Q
    |||||||||||||||||||||||||||||| |||||||||    
T  48505122 tattaagtttttatattgggtctaactcatccttacaaaa 48505083  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 143 - 182
Target Start/End: Original strand, 45941117 - 45941156
Alignment:
Q  143 tattaagtttttatattgggtctaactcattcttacaaaa 182  Q
    ||||||||||||| |||||||||||||||| |||||||||    
T  45941117 tattaagtttttagattgggtctaactcatccttacaaaa 45941156  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 143 - 184
Target Start/End: Complemental strand, 4379329 - 4379288
Alignment:
Q  143 tattaagtttttatattgggtctaactcattcttacaaaatc 184  Q
    |||||||||| |||||||||| ||||||||||||||||||||    
T  4379329 tattaagtttgtatattgggtttaactcattcttacaaaatc 4379288  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 149 - 182
Target Start/End: Original strand, 11967112 - 11967145
Alignment:
Q  149 gtttttatattgggtctaactcattcttacaaaa 182  Q
    ||||||||||||||||||||||||||||||||||    
T  11967112 gtttttatattgggtctaactcattcttacaaaa 11967145  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 151 - 184
Target Start/End: Complemental strand, 43402668 - 43402635
Alignment:
Q  151 ttttatattgggtctaactcattcttacaaaatc 184  Q
    ||||||||||||||||| ||||||||||||||||    
T  43402668 ttttatattgggtctaattcattcttacaaaatc 43402635  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 182
Target Start/End: Complemental strand, 26005859 - 26005819
Alignment:
Q  142 atattaagtttttatattgggtctaactcattcttacaaaa 182  Q
    ||||||||||||||| |||||||| |||||| |||||||||    
T  26005859 atattaagtttttatgttgggtcttactcatccttacaaaa 26005819  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 182
Target Start/End: Original strand, 33145649 - 33145689
Alignment:
Q  142 atattaagtttttatattgggtctaactcattcttacaaaa 182  Q
    |||||| |||||||||||| | |||||||||||||||||||    
T  33145649 atattaggtttttatattgagcctaactcattcttacaaaa 33145689  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 172
Target Start/End: Original strand, 20864672 - 20864702
Alignment:
Q  142 atattaagtttttatattgggtctaactcat 172  Q
    |||||||||||||||||||||||||||||||    
T  20864672 atattaagtttttatattgggtctaactcat 20864702  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 182
Target Start/End: Original strand, 43491365 - 43491405
Alignment:
Q  142 atattaagtttttatattgggtctaactcattcttacaaaa 182  Q
    |||||| |||||||||||||||||||||||| |||| ||||    
T  43491365 atattaggtttttatattgggtctaactcatccttaaaaaa 43491405  T

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