View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9651_high_2 (Length: 694)
Name: NF9651_high_2
Description: NF9651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9651_high_2 |
 | |
|
| [»] scaffold0214 (1 HSPs) |
| | |
|
| [»] scaffold0036 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 411; Significance: 0; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 1 - 679
Target Start/End: Original strand, 11296987 - 11297669
Alignment:
| Q |
1 |
aaaatccaaattgacattatcaaaggctttctctagatcaattttgaaagccacatagccatctttcttctttgatctgcgcatgaagtgagtgatttcc |
100 |
Q |
| |
|
||||||| ||||||| || ||||| |||||||| | |||| |||||||| ||||| || | ||| | || ||||| ||||||||| ||||||| |
|
|
| T |
11296987 |
aaaatcccaattgacgttgtcaaaagctttctccaagtcaagcttgaaagcgacataacccttcttccttttagatcttatcatgaagtggatgatttcg |
11297086 |
T |
|
| Q |
101 |
tgcaaaacaattgtgttgtcagtagtgcacctagcaggcggaaaactgctttgatagggaccaataatattagtaagaatatgtctgagacgatgcacca |
200 |
Q |
| |
|
||||||||||||| ||| |||| ||| | ||| ||||| |||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
11297087 |
tgcaaaacaattgagttatcagaagtaccactaccaggcagaaaactgctttgataggaaccaataatattagtaagaataggtctgagacgatgcacca |
11297186 |
T |
|
| Q |
201 |
aaacttttgtgataattttgtagattatgttggagagactgatgggtctaaaatatttatatgtgctaggaagatcaattttttgaatgagtgcaatgat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| ||||| |||||| ||||||||||| |||||||||||||||| |
|
|
| T |
11297187 |
aaacttttgtgataattttgtagattatgttgcagagactgatgggtctaaaatctttgtatgtactaggaggatcaatttttggaatgagtgcaatgat |
11297286 |
T |
|
| Q |
301 |
tgtttgagatgtccggctaaaaataacctgtttggaaggctgaatgaaccatatgaaaaatatcatcactaacaatgtgtcaatattacttgaagaaaat |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| || |||||||||||||||||||| |||||||||||||||| ||||||||||| |||||||||||| |
|
|
| T |
11297287 |
tgtttgagatgtccggctaaaaataacctgtttgaaatgctgaatgaaccatatgaaatatatcatcactaacaacgtgtcaatattgcttgaagaaaat |
11297386 |
T |
|
| Q |
401 |
gcaatgaaagccatcgggtcatagggctttctaaggtttcatagagttga-gggcatcaaacacttca----nnnnnnnnaccttggttaacgtacgtgc |
495 |
Q |
| |
|
|||||||||||||| ||||||| ||||||||||||||||||||||||| ||||| | ||||||||| |||||||||||||||||||| |
|
|
| T |
11297387 |
gcaatgaaagccattgggtcatgaagctttctaaggtttcatagagttgaggggcagcgaacacttcattttttttttttaccttggttaacgtacgtgc |
11297486 |
T |
|
| Q |
496 |
aaaatcatctataataactctcggttaacgtaatgtgtcaaactcgacaaattaatgataacagattcatttataaatcacaaatcaacacttctaagaa |
595 |
Q |
| |
|
||||| ||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
11297487 |
aaaattatctataataactctcggttagcgtaatgtatcaaactcgacaaattaatgataacagattcatttataaatcacaaatcaacacttc-aagaa |
11297585 |
T |
|
| Q |
596 |
caaactccaactagtaatatagcatacgagttacgtcaacctaaattgtcaaaatcacattaacatagtaatttgtctatgatt |
679 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
11297586 |
caaactccaactagtaatatagcatacgagttacgtcaacctaaattgccaaaatcacattaacatagtaatttgtctatgatt |
11297669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 44 - 467
Target Start/End: Original strand, 24894067 - 24894492
Alignment:
| Q |
44 |
ttgaaagccacatagccatctttcttctttgatctgcgcatgaagtgagtgatttcctgcaaaacaattgtgttgtcagtagtgcacctagcaggcggaa |
143 |
Q |
| |
|
|||||||| ||||| || | ||| |||||||| | | |||||||||| | ||||||||||||||||||| ||| |||| ||| | |||| ||||| ||| |
|
|
| T |
24894067 |
ttgaaagcaacataacctttcttcctctttgatttcctcatgaagtgaataatttcctgcaaaacaattgagttatcagaagttcccctaccaggcagaa |
24894166 |
T |
|
| Q |
144 |
aactgctttgatagggaccaataatattagtaagaatatgtctgagacgatgcaccaaaacttttgtgataattttgtagattatgttggagagactgat |
243 |
Q |
| |
|
| |||||||| | || ||||||| |||| | || ||| |||||||||||||||| | |||||| | |||||| ||||||||||||||| | |||||||| |
|
|
| T |
24894167 |
agctgctttggcaagggccaataagattactgaggataggtctgagacgatgcacaagaactttagggataatcttgtagattatgttgcatagactgat |
24894266 |
T |
|
| Q |
244 |
gggtctaaaatatttatatgtgctaggaagatcaattttttgaatgagtgcaat--gattgtttgagatgtccggctaaaaataacctgtttggaaggct |
341 |
Q |
| |
|
||||||||||| ||| | ||| | || | || ||||| ||||||||||||| || ||||||| || ||||| | ||| | |||||| ||||||||| |
|
|
| T |
24894267 |
gggtctaaaatctttgaaagtggtgggggggtcgattttcggaatgagtgcaatgagagtgtttgaaatctccggatcaaagtgacctgtgtggaaggct |
24894366 |
T |
|
| Q |
342 |
gaatgaaccatatgaaaaatatcatcactaacaatgtgtcaatattacttgaagaaaatgcaatgaaagccatcgggtcatagggctttctaaggtttca |
441 |
Q |
| |
|
| ||| |||||||| || || ||||| | ||| || || ||||||| ||||| || || ||||| || ||||| | | ||||||| || ||||||| |
|
|
| T |
24894367 |
gtatggaccatatggaagatgtcatctccaactatatgccaatattgtttgaaaaagatacaatggaatccatccgagccaggggctttgtatggtttca |
24894466 |
T |
|
| Q |
442 |
tagagttgagggcatcaaacacttca |
467 |
Q |
| |
|
| ||||||||||| |||| |||||| |
|
|
| T |
24894467 |
tggagttgagggcgacaaaaacttca |
24894492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 12 - 207
Target Start/End: Original strand, 32725660 - 32725855
Alignment:
| Q |
12 |
tgacattatcaaaggctttctctagatcaattttgaaagccacatagccatctttcttctttgatctgcgcatgaagtgagtgatttcctgcaaaacaat |
111 |
Q |
| |
|
||||||||||||| |||||||| || |||| ||||||||| ||||| || | ||||| || ||||| | ||| |||||| ||||||| ||||||||| |
|
|
| T |
32725660 |
tgacattatcaaaagctttctccaggtcaagtttgaaagctacatatcccttcttctttttagatcttctcataaagtgaactatttcctacaaaacaat |
32725759 |
T |
|
| Q |
112 |
tgtgttgtcagtagtgcacctagcaggcggaaaactgctttgatagggaccaataatattagtaagaatatgtctgagacgatgcaccaaaacttt |
207 |
Q |
| |
|
|| ||||||| ||| | |||| |||| ||||||||||||| || || ||||||| |||| |||||||| |||||||||||||||||| |||||| |
|
|
| T |
32725760 |
tgagttgtcataagttcccctattaggcagaaaactgctttggtaagggccaataagattattaagaataggtctgagacgatgcaccagaacttt |
32725855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 11 - 172
Target Start/End: Complemental strand, 35233441 - 35233280
Alignment:
| Q |
11 |
ttgacattatcaaaggctttctctagatcaattttgaaagccacatagccatctttcttctttgatctgcgcatgaagtgagtgatttcctgcaaaacaa |
110 |
Q |
| |
|
|||||||| ||||| |||||||||||||||| ||||||||| ||||| || | ||||| || ||| | | |||||||||| ||||||| |||||||| |
|
|
| T |
35233441 |
ttgacattgtcaaaagctttctctagatcaagtttgaaagctacataccctttcttctttttggattttctcatgaagtgaacaatttccttcaaaacaa |
35233342 |
T |
|
| Q |
111 |
ttgtgttgtcagtagtgcacctagcaggcggaaaactgctttgatagggaccaataatatta |
172 |
Q |
| |
|
||| |||||||| |||| |||| ||| | ||||||||||||||||||| |||||||||||| |
|
|
| T |
35233341 |
ttgagttgtcagaggtgcccctaccagacagaaaactgctttgataggggccaataatatta |
35233280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 516 - 650
Target Start/End: Original strand, 11292093 - 11292227
Alignment:
| Q |
516 |
tcggttaacgtaatgtgtcaaactcgacaaa-ttaatgataacagattcatttataaatcacaaatcaacacttctaagaacaaactccaactagtaata |
614 |
Q |
| |
|
||||||| ||||||| |||||||| ||||| |||||| ||||| ||||| ||||||||||||| | |||||||| |||||||||||||||||||||| | |
|
|
| T |
11292093 |
tcggttagtgtaatgtctcaaactcaacaaaattaatgttaacaaattcaattataaatcacaatttaacacttc-aagaacaaactccaactagtaaga |
11292191 |
T |
|
| Q |
615 |
tagcatacgagttacgtcaacctaaattgtcaaaat |
650 |
Q |
| |
|
|||| || |||||||||||| | |||||| |||||| |
|
|
| T |
11292192 |
tagcctaggagttacgtcaatccaaattgccaaaat |
11292227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 95 - 215
Target Start/End: Complemental strand, 13599455 - 13599335
Alignment:
| Q |
95 |
atttcctgcaaaacaattgtgttgtcagtagtgcacctagcaggcggaaaactgctttgatagggaccaataatattagtaagaatatgtctgagacgat |
194 |
Q |
| |
|
||||||||||||||||||| |||||||| |||| | || |||| ||||| | ||||||||||| ||||||||| | ||||||| || ||||||| | |
|
|
| T |
13599455 |
atttcctgcaaaacaattgaattgtcagtggtgcccttatcaggttgaaaaatactttgataggggccaataataacattaagaatgggtatgagacggt |
13599356 |
T |
|
| Q |
195 |
gcaccaaaacttttgtgataa |
215 |
Q |
| |
|
| ||||| ||||| ||||||| |
|
|
| T |
13599355 |
gaaccaagactttggtgataa |
13599335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 320 - 467
Target Start/End: Complemental strand, 35233130 - 35232983
Alignment:
| Q |
320 |
aaaataacctgtttggaaggctgaatgaaccatatgaaaaatatcatcactaacaatgtgtcaatattacttgaagaaaatgcaatgaaagccatcgggt |
419 |
Q |
| |
|
||||| ||| ||||||||||||| | ||| | || ||||||||||| | || ||| || ||||||| ||||||||| |||||||| || ||||| ||| |
|
|
| T |
35233130 |
aaaatcaccggtttggaaggctgttttaactagatagaaaatatcatctccaataatatgccaatattgcttgaagaatatgcaatggaaaccatctggt |
35233031 |
T |
|
| Q |
420 |
catagggctttctaaggtttcatagagttgagggcatcaaacacttca |
467 |
Q |
| |
|
| | | ||||| || |||||||| ||||| |||||| |||| |||||| |
|
|
| T |
35233030 |
cctggagctttgtagggtttcatggagtttagggcagcaaagacttca |
35232983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 326 - 387
Target Start/End: Complemental strand, 13599222 - 13599161
Alignment:
| Q |
326 |
acctgtttggaaggctgaatgaaccatatgaaaaatatcatcactaacaatgtgtcaatatt |
387 |
Q |
| |
|
|||| ||||||||||||| || ||||||||| |||||||||| | || |||||| ||||||| |
|
|
| T |
13599222 |
acctttttggaaggctgactgcaccatatgagaaatatcatccccaataatgtgccaatatt |
13599161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 132; Significance: 3e-68; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 48848136 - 48847913
Alignment:
| Q |
1 |
aaaatccaaattgacattatcaaaggctttctctagatcaattttgaaagccacatagccatctttcttctttgatctgcgcatgaagtgagtgatttcc |
100 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| ||||||||||||||||||| ||| |||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
48848136 |
aaaatcccaattgacattatcaaaggctttctcaagatcaattttgaaagccatataaccatctttcttctttgtcctgcgcatgaagtgagtgatttcc |
48848037 |
T |
|
| Q |
101 |
tgcaaaacaattgtgttgtcagtagtgcacctagcaggcggaaaactgctttgatagggaccaataatattagtaagaatatgtctgagacgatgcacca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| ||| | ||||||||||||||||| ||||||||||||| |||||||| || | || ||||| || | |
|
|
| T |
48848036 |
tgcaaaacaattgtgttgtcagtagtgcccctaccagacagaaaactgctttgatagagaccaataatattgctaagaataggtattaggcgatgaacaa |
48847937 |
T |
|
| Q |
201 |
aaacttttgtgataattttgtaga |
224 |
Q |
| |
|
||||| ||||| |||||||||| |
|
|
| T |
48847936 |
ggactttggtgatgattttgtaga |
48847913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 33803940 - 33803716
Alignment:
| Q |
1 |
aaaatccaaattgacattatcaaaggctttctctagatcaattttgaaagccacatagccatctttcttctttgatctgcgcatgaagtgagtgatttcc |
100 |
Q |
| |
|
||||||| |||| |||||||||||||||||||| || |||| || || |||||| | || | ||||||||| ||||| | |||| | ||| | |||||| |
|
|
| T |
33803940 |
aaaatcccaattaacattatcaaaggctttctcaaggtcaagcttaaacgccacaaatccttttttcttcttagatcttctcatgtaatgaataatttcc |
33803841 |
T |
|
| Q |
101 |
tgcaaaacaattgtgttgtcagtagtgcacctagcaggcggaaaactgctttgatagggaccaataatattagtaagaatatgtctgagacgatgcacca |
200 |
Q |
| |
|
||||||||||| | || |||| ||| | |||| ||||| |||| |||||||| || || || ||||||||| |||||||| |||||||||| || |||| |
|
|
| T |
33803840 |
tgcaaaacaatggaattatcagaagttcccctaccaggcagaaagctgctttggtaagggcctataatattattaagaataggtctgagacgctggacca |
33803741 |
T |
|
| Q |
201 |
aaacttttgtgataattttgtagat |
225 |
Q |
| |
|
||||||| || || ||||||||||| |
|
|
| T |
33803740 |
aaactttagtaatgattttgtagat |
33803716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 95 - 463
Target Start/End: Original strand, 54477686 - 54478057
Alignment:
| Q |
95 |
atttcctgcaaaa-caattgtgttgtcagtagtgcacctagcaggcggaaaactgctttgatagggaccaataatattagtaagaatatgtctgagacga |
193 |
Q |
| |
|
||||||||||||| |||| | ||| || | ||||| ||| ||||| ||||||||||||| |||| |||||||| |||||||||||| | || || || |
|
|
| T |
54477686 |
atttcctgcaaaaacaatagagttatctgaagtgccccttccaggcagaaaactgctttggcaggggccaataatgttagtaagaataggccttagtcgg |
54477785 |
T |
|
| Q |
194 |
tgcaccaaaacttttgtgataattttgtagattatgttggagagactgatgggtctaaaatatttatatgtgctaggaagatcaattttttgaatgagtg |
293 |
Q |
| |
|
|| |||||||| |||||||||||||||||||| || || | || ||||||||||| || | |||||| || | || | |||||| | ||||||||| |
|
|
| T |
54477786 |
tgaaccaaaacctttgtgataattttgtagatgatattacaaaggctgatgggtctgaagtctttataagtagtgggtgggtcaattataggaatgagtg |
54477885 |
T |
|
| Q |
294 |
caat--gattgtttgagatgtccggctaaaaataacctgtttggaaggctgaatgaaccatatgaaaaatatcatcactaacaatgtgtcaatattactt |
391 |
Q |
| |
|
|||| || |||||||||| || || | ||| ||||| |||| || |||| || ||||| ||| | |||||||||| ||||||||| ||||||| || |
|
|
| T |
54477886 |
caatgagagtgtttgagatctctggatcaaagtaaccgatttgaaaagctgtgtggaccatttgatagatatcatcaccaacaatgtgccaatattgttt |
54477985 |
T |
|
| Q |
392 |
gaagaaaatgcaatgaaagccatcgggtcatagggctttctaaggtttcatagagttgagggcatcaaacac |
463 |
Q |
| |
|
|||||| ||| | || |||||||| || | | |||||| || || ||||||||||| |||| | ||||||| |
|
|
| T |
54477986 |
gaagaagatgtagtggaagccatctgggcctgaggctttatagggcttcatagagttaagggaagcaaacac |
54478057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 95 - 340
Target Start/End: Complemental strand, 3881583 - 3881336
Alignment:
| Q |
95 |
atttcctgcaaaacaattgtgttgtcagtagtgcacctagcaggcggaaaactgctttgatagggaccaataatattagtaagaatatgtctgagacgat |
194 |
Q |
| |
|
||||||||||||||||| | ||| |||| ||| | |||| ||||| ||||||||||||| || || ||||||| ||| | || ||| |||| ||||||| |
|
|
| T |
3881583 |
atttcctgcaaaacaatagagttatcagaagttcccctaccaggcagaaaactgctttggtaagggccaataagcttattgagtataggtctcagacgat |
3881484 |
T |
|
| Q |
195 |
gcaccaaaacttttgtgataattttgtagattatgttggagagactgatgggtctaaaatatttatatgtgctaggaagatcaattttttgaatgagtgc |
294 |
Q |
| |
|
|||| | ||||| |||||||| || |||||||| ||| | || ||||| || || || | |||| | || | ||||||||| |||| |||||||||| |
|
|
| T |
3881483 |
gcacaaggactttagtgataatcttatagattatattgcaaaggctgataggcctgaagtctttaaaagtagtgggaagatcagttttgggaatgagtgc |
3881384 |
T |
|
| Q |
295 |
aatgattg--tttgagatgtccggctaaaaataacctgtttggaaggc |
340 |
Q |
| |
|
|||| || || ||||| ||||| | ||||| |||||| |||||||| |
|
|
| T |
3881383 |
tatgagtgtattcgagatctccggatcaaaatgacctgtctggaaggc |
3881336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 65 - 222
Target Start/End: Original strand, 7587878 - 7588035
Alignment:
| Q |
65 |
ttcttctttgatctgcgcatgaagtgagtgatttcctgcaaaacaattgtgttgtcagtagtgcacctagcaggcggaaaactgctttgatagggaccaa |
164 |
Q |
| |
|
||||| || ||||| | |||||||||| ||||||||||||||||||| |||||||| || | |||| ||| ||||||| ||||| ||||| |||| |
|
|
| T |
7587878 |
ttctttttggatcttctcatgaagtgaacaatttcctgcaaaacaattgaattgtcagttgttcccctacgaggtagaaaactactttggtaggggccaa |
7587977 |
T |
|
| Q |
165 |
taatattagtaagaatatgtctgagacgatgcaccaaaacttttgtgataattttgta |
222 |
Q |
| |
|
||||| | ||||||| |||||||||| || ||||| ||||| ||||| | |||||| |
|
|
| T |
7587978 |
taataacattaagaatcggtctgagacggtgaaccaagactttggtgatgagtttgta |
7588035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 82 - 172
Target Start/End: Original strand, 46784742 - 46784832
Alignment:
| Q |
82 |
catgaagtgagtgatttcctgcaaaacaattgtgttgtcagtagtgcacctagcaggcggaaaactgctttgatagggaccaataatatta |
172 |
Q |
| |
|
|||||||||| ||||||||||||||||| | |||||||| |||| | || | || ||||||| ||||| |||||||||||||||||| |
|
|
| T |
46784742 |
catgaagtgaacaatttcctgcaaaacaatagagttgtcagaggtgcccttacctggtagaaaactactttggtagggaccaataatatta |
46784832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 121; Significance: 1e-61; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 9 - 225
Target Start/End: Original strand, 1579355 - 1579571
Alignment:
| Q |
9 |
aattgacattatcaaaggctttctctagatcaattttgaaagccacatagccatctttcttctttgatctgcgcatgaagtgagtgatttcctgcaaaac |
108 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| | || |||||||||||| ||||||| |||||| |
|
|
| T |
1579355 |
aattgacattatcaaaggctttctccagatcaattttgaaagccacataaccatctttcttctttgacccgcacatgaagtgagttatttccttcaaaac |
1579454 |
T |
|
| Q |
109 |
aattgtgttgtcagtagtgcacctagcaggcggaaaactgctttgatagggaccaataatattagtaagaatatgtctgagacgatgcaccaaaactttt |
208 |
Q |
| |
|
||||| ||||||||||| || |||| |||| ||||||||||||||||||||||||||||||| |||||||| |||| || ||||| || | ||||| |
|
|
| T |
1579455 |
aattgagttgtcagtagcgcccctactaggcagaaaactgctttgatagggaccaataatattgctaagaataggtctcagtcgatgaacaaggactttg |
1579554 |
T |
|
| Q |
209 |
gtgataattttgtagat |
225 |
Q |
| |
|
||||| ||||||||||| |
|
|
| T |
1579555 |
gtgatgattttgtagat |
1579571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 86 - 467
Target Start/End: Original strand, 23208139 - 23208522
Alignment:
| Q |
86 |
aagtgagtgatttcctgcaaaacaattgtgttgtcagtagtgcacctagcaggcggaaaactgctttgatagggaccaataatattagtaagaatatgtc |
185 |
Q |
| |
|
|||||| | ||||||||||||||||||| |||||||| ||| | |||| | ||| ||||||||||||| | || ||||||| |||| | |||||| ||| |
|
|
| T |
23208139 |
aagtgaataatttcctgcaaaacaattgagttgtcagaagttcccctacctggcagaaaactgctttggcaagggccaataagattactgagaataggtc |
23208238 |
T |
|
| Q |
186 |
tgagacgatgcaccaaaacttttgtgataattttgtagattatgttggagagactgatgggtctaaaatatttatatgtgctaggaagatcaattttttg |
285 |
Q |
| |
|
||||||||||||| | |||||| |||||||| |||||| |||||||| ||||||||||||||||||||| ||| |||||| | || | || ||||| | |
|
|
| T |
23208239 |
tgagacgatgcacaagaactttagtgataatcttgtaggttatgttgcagagactgatgggtctaaaatctttgtatgtggtgggggggtcgattttagg |
23208338 |
T |
|
| Q |
286 |
aatgagtgcaatga--ttgtttgagatgtccggctaaaaataacctgtttggaaggctgaatgaaccatatgaaaaatatcatcactaacaatgtgtcaa |
383 |
Q |
| |
|
|||||||||||||| || |||| || ||||| | ||| ||||| || || ||||||| || |||||||| || || || || | ||| || || ||| |
|
|
| T |
23208339 |
aatgagtgcaatgagggtgcttgaaatctccggatcaaagtaacccgtgtgaaaggctgtttggaccatatggaagatgtcgtctccaactatatgccaa |
23208438 |
T |
|
| Q |
384 |
tattacttgaagaaaatgcaatgaaagccatcgggtcatagggctttctaaggtttcatagagttgagggcatcaaacacttca |
467 |
Q |
| |
|
|||| |||||||| || ||||| ||||| || || | ||||||| || |||||||| || ||||||||| |||| |||||| |
|
|
| T |
23208439 |
tattgtttgaagaagatacaatggaagccgtccgggccaggggctttgtatggtttcatggaattgagggcaacaaaaacttca |
23208522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 11 - 215
Target Start/End: Original strand, 16770160 - 16770363
Alignment:
| Q |
11 |
ttgacattatcaaaggctttctctagatcaattttgaaagccacatagccatctttcttctttgatctgcgcatgaagtgagtgatttcctgcaaaacaa |
110 |
Q |
| |
|
|||||||||||||| ||||| || || |||| || ||||||||||| || ||||| || ||| |||| | || ||| ||| |||||||||||||||| |
|
|
| T |
16770160 |
ttgacattatcaaaagctttttcaaggtcaagcttaaaagccacataaccttctttttttttt-atcttctcaagaaatgaaaaatttcctgcaaaacaa |
16770258 |
T |
|
| Q |
111 |
ttgtgttgtcagtagtgcacctagcaggcggaaaactgctttgatagggaccaataatattagtaagaatatgtctgagacgatgcaccaaaacttttgt |
210 |
Q |
| |
|
||| |||||||||||||| |||| ||||| |||||||||| ||||| |||||||||||| || |||| | |||||||||| | ||||| ||||| || |
|
|
| T |
16770259 |
ttgagttgtcagtagtgcccctaccaggcagaaaactgctctgataaggaccaataataatattaaggagtggtctgagacggttaaccaagactttggt |
16770358 |
T |
|
| Q |
211 |
gataa |
215 |
Q |
| |
|
||||| |
|
|
| T |
16770359 |
gataa |
16770363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 2 - 177
Target Start/End: Original strand, 27781819 - 27781994
Alignment:
| Q |
2 |
aaatccaaattgacattatcaaaggctttctctagatcaattttgaaagccacatagccatctttcttctttgatctgcgcatgaagtgagtgatttcct |
101 |
Q |
| |
|
|||||| |||||||||||||||| ||||||||||| |||| ||||||||| ||| | || | |||||||| ||||| ||||| ||||| ||||||| |
|
|
| T |
27781819 |
aaatcccaattgacattatcaaaagctttctctaggtcaagtttgaaagctacacaacctttcttcttcttagatctccgcataaagtgtacaatttcct |
27781918 |
T |
|
| Q |
102 |
gcaaaacaattgtgttgtcagtagtgcacctagcaggcggaaaactgctttgatagggaccaataatattagtaag |
177 |
Q |
| |
|
||||||||| | |||||||| |||| |||| | ||| | || ||||||||||||||||| ||||||||| |||| |
|
|
| T |
27781919 |
acaaaacaatagagttgtcagccgtgcccctacctggcaggaagctgctttgatagggacctataatattattaag |
27781994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 544 - 650
Target Start/End: Original strand, 30909041 - 30909147
Alignment:
| Q |
544 |
aaattaatgataacagattcatttataaatcacaaatcaacacttctaagaacaaactccaactagtaatatagcatacgagttacgtcaacctaaattg |
643 |
Q |
| |
|
||||||||| | ||| |||||||||||||||||||||||||||||| | || |||| |||||||||| ||| | || |||||||||||||| |||||| |
|
|
| T |
30909041 |
aaattaatgttgacacattcatttataaatcacaaatcaacacttcaagaaaaaaaccacaactagtaagataacctaggagttacgtcaacccaaattg |
30909140 |
T |
|
| Q |
644 |
tcaaaat |
650 |
Q |
| |
|
|||||| |
|
|
| T |
30909141 |
ccaaaat |
30909147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 326 - 455
Target Start/End: Original strand, 16770476 - 16770605
Alignment:
| Q |
326 |
acctgtttggaaggctgaatgaaccatatgaaaaatatcatcactaacaatgtgtcaatattacttgaagaaaatgcaatgaaagccatcgggtcatagg |
425 |
Q |
| |
|
|||||||||||| || ||||| ||||||| ||||||||||| | || |||||| || |||| ||||| |||||||| || || ||||| || | | | |
|
|
| T |
16770476 |
acctgtttggaaagccgaatgcaccatattgaaaatatcatctccaataatgtgccagtattgtttgaaaaaaatgcattggaaaccatccggacctggt |
16770575 |
T |
|
| Q |
426 |
gctttctaaggtttcatagagttgagggca |
455 |
Q |
| |
|
||||| ||||||||||||||||| |||||| |
|
|
| T |
16770576 |
gctttgtaaggtttcatagagttaagggca |
16770605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 101; Significance: 1e-49; HSPs: 10)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 2 - 367
Target Start/End: Original strand, 31325138 - 31325505
Alignment:
| Q |
2 |
aaatccaaattgacattatcaaaggctttctctagatcaattttgaaagccacatagccatctttcttctttgatctgcgcatgaagtgagtgatttcct |
101 |
Q |
| |
|
|||||| |||||||||||||||| |||||||| || |||| ||||||||| || || || | |||||||| ||||| | ||||||||| ||||||| |
|
|
| T |
31325138 |
aaatcccaattgacattatcaaaagctttctccaggtcaagtttgaaagctacgtaacccttcttcttcttggatcttctcatgaagtggacaatttcct |
31325237 |
T |
|
| Q |
102 |
gcaaaacaattgtgttgtcagtagtgcacctagcaggcggaaaactgctttgatagggaccaataatattagtaagaatatgtctgagacgatgcaccaa |
201 |
Q |
| |
|
|||||||||||| ||| |||| ||| | |||| ||||| ||||||||||| | ||||| |||||||||||| | |||||| | ||||| || ||||| | |
|
|
| T |
31325238 |
gcaaaacaattgagttatcagaagttcccctaccaggcagaaaactgcttcggtaggggccaataatattattgagaataggcctgaggcggtgcacaag |
31325337 |
T |
|
| Q |
202 |
aacttttgtgataattttgtagattatgttggagagactgatgggtctaaaatatttatatgtgctaggaagatcaattttttgaatgagtgcaat--ga |
299 |
Q |
| |
|
||||||||| || || |||||||||||||| | |||||||| ||| |||||| ||| |||||| |||| |||||||||| ||||||||||||| || |
|
|
| T |
31325338 |
aacttttgtaatgatcttgtagattatgttacaaagactgataggtttaaaatctttgtatgtgttaggggaatcaatttttggaatgagtgcaataaga |
31325437 |
T |
|
| Q |
300 |
ttgtttgagatgtccggctaaaaataacctgtttggaaggctgaatgaaccatatgaaaaatatcatc |
367 |
Q |
| |
|
| |||||||| ||||| | ||| | ||| || || || ||||| || |||||||||||||||||||| |
|
|
| T |
31325438 |
gtttttgagatctccggatcaaagtgaccagtgtgaaaagctgagtggaccatatgaaaaatatcatc |
31325505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 135 - 467
Target Start/End: Original strand, 5193373 - 5193707
Alignment:
| Q |
135 |
caggcggaaaactgctttgatagggaccaataatattagtaagaatatgtctgagacgatgcaccaaaacttttgtgataattttgtagattatgttgga |
234 |
Q |
| |
|
||||| ||| ||||||||| || || ||||||| |||| |||||||| |||||||||||||||| | ||||||||||||||| ||||||||||||||| | |
|
|
| T |
5193373 |
caggcagaagactgctttggtaagggccaataagattattaagaataggtctgagacgatgcacaagaacttttgtgataatcttgtagattatgttgca |
5193472 |
T |
|
| Q |
235 |
gagactgatgggtctaaaatatttatatgtgctaggaagatcaattttttgaatgagtgcaat--gattgtttgagatgtccggctaaaaataacctgtt |
332 |
Q |
| |
|
||| |||||||||||||||| ||| || ||| | | |||||||||| ||||||||||||| || || ||||||| ||||| | ||| | ||||||| |
|
|
| T |
5193473 |
gaggctgatgggtctaaaatctttgtaagtgttgagtgaatcaatttttggaatgagtgcaatgagagtgcttgagatctccggatcaaagtgacctgtt |
5193572 |
T |
|
| Q |
333 |
tggaaggctgaatgaaccatatgaaaaatatcatcactaacaatgtgtcaatattacttgaagaaaatgcaatgaaagccatcgggtcatagggctttct |
432 |
Q |
| |
|
||||||||||||| ||||| ||||||| |||||| | ||| ||||| ||||||| || ||||| |||||||| ||| ||||||| | ||||| | |
|
|
| T |
5193573 |
tggaaggctgaatagaccatgtgaaaaacatcatctccaactatgtgccaatattgtttaaagaagatgcaatggaagtcatcggggtcgggtgctttgt |
5193672 |
T |
|
| Q |
433 |
aaggtttcatagagttgagggcatcaaacacttca |
467 |
Q |
| |
|
| |||||||| || || |||||| ||||||||||| |
|
|
| T |
5193673 |
atggtttcatggaattaagggcagcaaacacttca |
5193707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 95 - 451
Target Start/End: Original strand, 50236844 - 50237202
Alignment:
| Q |
95 |
atttcctgcaaaacaattgtgttgtcagtagtgcacctagcaggcggaaaactgctttgatagggaccaataatattagtaagaatatgtctgagacgat |
194 |
Q |
| |
|
||||||||||||||||| | ||| |||| || | |||| ||||| ||||| |||||||||||||||||||||||||| |||| || | | ||||||| |
|
|
| T |
50236844 |
atttcctgcaaaacaatcgagttatcagatgtacccctaccaggcagaaaaatgctttgatagggaccaataatattattaaggatgggccgaagacgat |
50236943 |
T |
|
| Q |
195 |
gcaccaaaacttttgtgataattttgtagattatgttggagagactgatgggtctaaaatatttatatgtgctaggaagatcaattttttgaatgagtgc |
294 |
Q |
| |
|
||||||||||||| |||||||| ||||||| ||||| | || ||||| | ||||| | ||| || ||| || ||||||||||| |||||||||| |
|
|
| T |
50236944 |
gcaccaaaactttagtgataatcttgtagacaatgttacaaaggctgatagacctaaagtctttgtaggtggcgggcagatcaattttaggaatgagtgc |
50237043 |
T |
|
| Q |
295 |
aatgattgt--ttgagatgtccggctaaaaataacctgtttggaaggctgaatgaaccatatgaaaaatatcatcactaacaatgtgtcaatattacttg |
392 |
Q |
| |
|
||||| ||| ||||||| || || | ||||| |||||| |||||||||| || |||| ||| ||||| ||||||| ||||||||| ||||||| ||| |
|
|
| T |
50237044 |
aatgagtgtgtttgagatctctggatcaaaatgacctgtgaggaaggctgagtgtaccaaatgtaaaatgtcatcaccaacaatgtgccaatattgtttg |
50237143 |
T |
|
| Q |
393 |
aagaaaatgcaatgaaagccatcgggtcatagggctttctaaggtttcatagagttgag |
451 |
Q |
| |
|
|||||||||||||| |||||||| |||| | ||||| ||||||||||| |||||||| |
|
|
| T |
50237144 |
aagaaaatgcaatggaagccatctggtccaggtgctttgtaaggtttcattgagttgag |
50237202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 1 - 415
Target Start/End: Complemental strand, 43298323 - 43297907
Alignment:
| Q |
1 |
aaaatccaaattgacattatcaaaggctttctctagatcaattttgaaagccacatagccatctttcttctttgatctgcgcatgaagtgagtgatttcc |
100 |
Q |
| |
|
||||||| | |||||||||| ||| ||||||| || |||| |||||| || ||||| || | ||||| || ||||| | ||| || ||| |||||| |
|
|
| T |
43298323 |
aaaatcccatttgacattattaaaagctttcttcaggtcaagtttgaaggctacatatcccttcttctttttagatcttctcataaaatgaactatttcc |
43298224 |
T |
|
| Q |
101 |
tgcaaaacaattgtgttgtcagtagtgcacctagcaggcggaaaactgctttgatagggaccaataatattagtaagaatatgtctgagacgatgcacca |
200 |
Q |
| |
|
||||||||||||| ||| |||| ||| | |||| |||| ||||||||||||| || || ||||||| |||| | |||||| ||||||||| ||||| | |
|
|
| T |
43298223 |
tgcaaaacaattgagttatcagaagttcccctactaggcagaaaactgctttggtaagggccaataagattattgagaataggtctgagacagtgcacaa |
43298124 |
T |
|
| Q |
201 |
aaacttttgtgataattttgtagattatgttggagagactgatgggtctaaaatatttatatgtgctaggaagatcaattttttgaatgagtgcaatgat |
300 |
Q |
| |
|
||||||||| ||||| || |||||||||||| ||||||||||||| ||||||| ||| || ||| | || ||||||||| ||||||||||||||| |
|
|
| T |
43298123 |
gaacttttgtaataatcttatagattatgttgcagagactgatgggcctaaaatctttgtaagtgttgggtgaatcaattttaggaatgagtgcaatgag |
43298024 |
T |
|
| Q |
301 |
tgt--ttgagatgtccggctaaaaataacctgtttggaaggctgaatgaaccatatgaaaaatatcatcactaacaatgtgtcaatattacttgaagaaa |
398 |
Q |
| |
|
|| |||| || ||| | | ||||| |||| ||||||||||||| || ||||| ||||||| |||||| | ||| ||||| ||||||| |||||||| |
|
|
| T |
43298023 |
agtgcttgaaatctccagatcaaaatgacctatttggaaggctgagtggaccatgtgaaaaacatcatctccaactatgtgccaatattgtttgaagaag |
43297924 |
T |
|
| Q |
399 |
atgcaatgaaagccatc |
415 |
Q |
| |
|
|||||||| |||||||| |
|
|
| T |
43297923 |
atgcaatggaagccatc |
43297907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 14 - 415
Target Start/End: Complemental strand, 1524919 - 1524516
Alignment:
| Q |
14 |
acattatcaaaggctttctctagatcaattttgaaagccacatagccatctttcttctttgatctgcgcatgaagtgagtgatttcctgcaaaacaattg |
113 |
Q |
| |
|
||||||||||| |||||||||||||| | ||| ||||| ||| | || | |||||| |||||| | | ||||||||| ||||||||||||||||| | |
|
|
| T |
1524919 |
acattatcaaaagctttctctagatctagtttaaaagctacacaaccttttttcttttttgattttctcatgaagtggacaatttcctgcaaaacaatag |
1524820 |
T |
|
| Q |
114 |
tgttgtcagtagtgcacctagcaggcggaaaactgctttgatagggaccaataatattagtaagaatatgtctgagacgatgcaccaaaacttttgtgat |
213 |
Q |
| |
|
|| |||| ||| | |||| ||||| ||||||| ||||||||||| |||||||||||| | ||||| |||| || | || ||||||||||| ||||| |
|
|
| T |
1524819 |
aattatcagaagttcccctaccaggcagaaaactactttgataggggccaataatattatttagaatcggtctcagtctattaaccaaaactttggtgat |
1524720 |
T |
|
| Q |
214 |
aattttgtagattatgttggagagactgatgggtctaaaatatttatatgtgctaggaagatcaattttttgaatgagtgcaat--gattgtttgagatg |
311 |
Q |
| |
|
|||||| || | |||||| | | ||||||||||||||||| ||| || || ||||| ||||| || ||||||||||||| || | ||||| || |
|
|
| T |
1524719 |
aattttataaacaatgttgcacatactgatgggtctaaaatctttgtaaatgttaggagtgtcaatcttgggaatgagtgcaatgagagtatttgaaatc |
1524620 |
T |
|
| Q |
312 |
tccggctaaaaataacctgtttggaaggctgaatgaaccatatgaaaaatatcatcactaacaatgtgtcaatattacttgaagaaaatgcaatgaaagc |
411 |
Q |
| |
|
||||| | ||||| ||| |||| ||||||||||| |||| |||||||| ||||| | ||| || || || |||| ||||||||| ||||| ||||| | |
|
|
| T |
1524619 |
tccggatcaaaatgaccattttgaaaggctgaatgtaccaagtgaaaaatgtcatctccaactatatgccagtatttcttgaagaagatgcattgaaaac |
1524520 |
T |
|
| Q |
412 |
catc |
415 |
Q |
| |
|
|||| |
|
|
| T |
1524519 |
catc |
1524516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 82 - 181
Target Start/End: Complemental strand, 20284733 - 20284634
Alignment:
| Q |
82 |
catgaagtgagtgatttcctgcaaaacaattgtgttgtcagtagtgcacctagcaggcggaaaactgctttgatagggaccaataatattagtaagaata |
181 |
Q |
| |
|
|||||| ||| | ||||||||||||||||| | ||| || | ||||| |||| ||||| |||| ||||||||||||||||||||||| |||||||||||| |
|
|
| T |
20284733 |
catgaaatgaataatttcctgcaaaacaatagagttatctgcagtgcccctaccaggcagaaagctgctttgatagggaccaataatgttagtaagaata |
20284634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 50451860 - 50451609
Alignment:
| Q |
1 |
aaaatccaaattgacattatcaaaggctttctctagatcaattttgaaagccacatagccatctttcttctttgatctgcgcatgaagtgagtgatttcc |
100 |
Q |
| |
|
||||||| | |||||||||||||| ||||| || | ||| | |||||||| ||||| || | ||||||||| || | | ||| || ||| | |||||| |
|
|
| T |
50451860 |
aaaatcccatttgacattatcaaatgctttttccaaatcgagcttgaaagcaacataaccttttttcttcttagacttcctcataaaatgaataatttcc |
50451761 |
T |
|
| Q |
101 |
tgcaaaacaattgtgttgtcagtagtgcacctagcaggcggaaaactgctttgatagggaccaataatattagtaagaatatgtctgagacgatgcacca |
200 |
Q |
| |
|
||||||||||| | ||| |||| ||| | |||| |||| |||| |||||||| || || ||||||| |||| | || ||| |||| ||||||||||| | |
|
|
| T |
50451760 |
tgcaaaacaatagagttatcagaagttcccctactaggcagaaagctgctttggtaagggccaataagattattgagtataggtctaagacgatgcacaa |
50451661 |
T |
|
| Q |
201 |
aaacttttgtgataattttgtagattatgttggagagactgatgggtctaaa |
252 |
Q |
| |
|
||||| |||||||| ||||||||||| ||| | || ||||| |||||||| |
|
|
| T |
50451660 |
ggactttagtgataatcttgtagattatattgcaaaggctgataggtctaaa |
50451609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 115 - 215
Target Start/End: Complemental strand, 23465188 - 23465088
Alignment:
| Q |
115 |
gttgtcagtagtgcacctagcaggcggaaaactgctttgatagggaccaataatattagtaagaatatgtctgagacgatgcaccaaaacttttgtgata |
214 |
Q |
| |
|
|||||||||||||| |||| ||||| |||||||||| |||||||||||||||||| || |||||| | |||||||| || ||||| ||||| |||||| |
|
|
| T |
23465188 |
gttgtcagtagtgcccctaccaggcagaaaactgctctgatagggaccaataataatattaagaagcggcctgagacggtgaaccaagactttggtgata |
23465089 |
T |
|
| Q |
215 |
a |
215 |
Q |
| |
|
| |
|
|
| T |
23465088 |
a |
23465088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 326 - 448
Target Start/End: Complemental strand, 23464975 - 23464853
Alignment:
| Q |
326 |
acctgtttggaaggctgaatgaaccatatgaaaaatatcatcactaacaatgtgtcaatattacttgaagaaaatgcaatgaaagccatcgggtcatagg |
425 |
Q |
| |
|
|||||||||||| || |||| ||||||| ||||||||||| | | |||||| || |||| ||||| |||||||| || |||||||| |||| | | |
|
|
| T |
23464975 |
acctgtttggaaagccaaatgcaccatattgaaaatatcatctccagtaatgtgccagtattgtttgaaaaaaatgcattggaagccatctggtcctggt |
23464876 |
T |
|
| Q |
426 |
gctttctaaggtttcatagagtt |
448 |
Q |
| |
|
||||| ||||||||||||||||| |
|
|
| T |
23464875 |
gctttgtaaggtttcatagagtt |
23464853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 197 - 271
Target Start/End: Complemental strand, 1524265 - 1524191
Alignment:
| Q |
197 |
accaaaacttttgtgataattttgtagattatgttggagagactgatgggtctaaaatatttatatgtgctagga |
271 |
Q |
| |
|
||||||||||| ||||||||||| || | |||||| | ||||||||||||||||||| ||| || ||| ||||| |
|
|
| T |
1524265 |
accaaaactttggtgataattttataaacaatgttgcacagactgatgggtctaaaatctttgtaagtgttagga |
1524191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 93; Significance: 6e-45; HSPs: 13)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 95 - 460
Target Start/End: Complemental strand, 573060 - 572693
Alignment:
| Q |
95 |
atttcctgcaaaacaattgtgttgtcagtagtgcacctagcaggcggaaaactgctttgatagggaccaataatattagtaagaatatgtctgagacgat |
194 |
Q |
| |
|
||||||||||||||||||| ||| |||| ||| |||| || || ||||||||||||| || || || ||||| ||| |||||||| |||| ||||||| |
|
|
| T |
573060 |
atttcctgcaaaacaattgagttatcagaagtttccctaccatgcagaaaactgctttggtaagggccgataatgttattaagaataggtctaagacgat |
572961 |
T |
|
| Q |
195 |
gcaccaaaacttttgtgataattttgtagattatgttggagagactgatgggtctaaaatatttatatgtgctaggaagatcaattttttgaatgagtgc |
294 |
Q |
| |
|
|||| | |||||||||||| || |||||||| | ||| |||| |||||||||||||||| ||| || ||| | ||| |||||||||| |||||||||| |
|
|
| T |
572960 |
gcacaagaacttttgtgatgatattgtagatcgtattgcagaggctgatgggtctaaaatctttgtaagtgatgggagaatcaatttttggaatgagtgc |
572861 |
T |
|
| Q |
295 |
aat--gattgtttgagatgtccggctaaaaataacctgtttggaaggctgaatgaaccatatgaaaaatatcatcactaacaatgtgtcaatattacttg |
392 |
Q |
| |
|
||| || ||| |||||| ||| | | |||||||||||| |||| ||||| ||||||||||| || || ||||| | ||| ||||| ||||||| ||| |
|
|
| T |
572860 |
aataagagtgtatgagatctccagatcaaaataacctgtgaggaaagctgattgaaccatatggaagatgtcatctccaactatgtgccaatattgtttg |
572761 |
T |
|
| Q |
393 |
aagaaaatgcaatgaaagccatcgggtcatagggctttctaaggtttcatagagttgagggcatcaaa |
460 |
Q |
| |
|
||||| |||||||| |||||||| || | | ||||| || |||||||| ||||| |||||| |||| |
|
|
| T |
572760 |
aagaagatgcaatggaagccatctggcccgggtgctttgtagggtttcatggagttaagggcaacaaa |
572693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 14 - 261
Target Start/End: Complemental strand, 26791270 - 26791023
Alignment:
| Q |
14 |
acattatcaaaggctttctctagatcaattttgaaagccacatagccatctttcttctttgatctgcgcatgaagtgagtgatttcctgcaaaacaattg |
113 |
Q |
| |
|
|||||||||||||||||||||| |||||| || |||||||| || || | |||||||| ||| |||||||| ||||| | | ||||||||||||||| | |
|
|
| T |
26791270 |
acattatcaaaggctttctctaaatcaatcttaaaagccacgtaccctttcttcttcttagatatgcgcatgtagtgaataacttcctgcaaaacaatgg |
26791171 |
T |
|
| Q |
114 |
tgttgtcagtagtgcacctagcaggcggaaaactgctttgatagggaccaataatattagtaagaatatgtctgagacgatgcaccaaaacttttgtgat |
213 |
Q |
| |
|
|||||||| |||| |||| ||||| | ||||| ||||| || ||||||||||||||| |||| ||| ||||||| ||||| || | ||||| ||||| |
|
|
| T |
26791170 |
cattgtcagtggtgctcctaccaggcaggaaactactttggtaaggaccaataatattattaaggataggtctgaggcgatggacaaggactttagtgat |
26791071 |
T |
|
| Q |
214 |
aattttgtagattatgttggagagactgatgggtctaaaatatttata |
261 |
Q |
| |
|
|||||||||||| ||||| | || || ||||||||||| | |||||| |
|
|
| T |
26791070 |
aattttgtagatgatgttacaaaggctaatgggtctaaagtctttata |
26791023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 95 - 467
Target Start/End: Original strand, 35135498 - 35135872
Alignment:
| Q |
95 |
atttcctgcaaaacaattgtgttgtcagtagtgcacctagcaggcggaaaactgctttgatagggaccaataatattagtaagaatatgtctgagacgat |
194 |
Q |
| |
|
||||||||||||||||| | |||||| | || | |||| ||||| |||||||||||| ||||||| |||||| ||||| |||||| | || || |||| |
|
|
| T |
35135498 |
atttcctgcaaaacaatggagttgtctgaggtacccctaccaggcaaaaaactgctttggtagggactaataatgttagtgagaataggccttagccgat |
35135597 |
T |
|
| Q |
195 |
gcaccaaaacttttgtgataattttgtagattatgttggagagactgatgggtctaaaatatttatatgtgctaggaagatcaattttttgaatgagtgc |
294 |
Q |
| |
|
| ||||| || ||||||||||||||||| || |||||| | || || |||||| | |||| ||| || || | || | ||||||||| ||||||| || |
|
|
| T |
35135598 |
gaaccaatacctttgtgataattttgtaaataatgttgcaaaggctaatgggtatgaaatctttgtaagtagtgggtggttcaatttttggaatgagcgc |
35135697 |
T |
|
| Q |
295 |
aat--gattgtttgagatgtccggctaaaaataacctgtttggaaggctgaatgaaccatatgaaaaatatcatcactaacaatgtgtcaatattacttg |
392 |
Q |
| |
|
||| || |||||||||| ||||| | ||| ||||| | ||| | |||| ||| ||||| | ||||||||||| | |||||||| || |||| |||| |
|
|
| T |
35135698 |
aatgagagtgtttgagatctccggatcaaagtaaccactatggtaagctgcatggaccattttgaaaatatcatctccgacaatgtgccagtattgcttg |
35135797 |
T |
|
| Q |
393 |
aagaaaatgcaatgaaagccatcgggtcatagggctttctaaggtttcatagagttgagggcatcaaacacttca |
467 |
Q |
| |
|
||||||||||||||||| || || || | ||||||| || || |||||||||||||||||| | ||||||||| |
|
|
| T |
35135798 |
aagaaaatgcaatgaaacccgtcaggaccaggggctttgtatggcttcatagagttgagggcagcgaacacttca |
35135872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 95 - 467
Target Start/End: Complemental strand, 40328046 - 40327672
Alignment:
| Q |
95 |
atttcctgcaaaacaattgtgttgtcagtagtgcacctagcaggcggaaaactgctttgatagggaccaataatattagtaagaatatgtctgagacgat |
194 |
Q |
| |
|
||||||||||||||||| | |||||| | || | |||| |||| |||||| ||||| |||||||||||||| ||||| |||||| | || || |||| |
|
|
| T |
40328046 |
atttcctgcaaaacaatggagttgtctgaggtacccctaccaggaaaaaaactactttggtagggaccaataatgttagtgagaataggccttagccgat |
40327947 |
T |
|
| Q |
195 |
gcaccaaaacttttgtgataattttgtagattatgttggagagactgatgggtctaaaatatttatatgtgctaggaagatcaattttttgaatgagtgc |
294 |
Q |
| |
|
| ||||| || ||||||||||||||||| || |||||| | || || |||||||| |||| ||| || || | || | ||||||||| ||||||| || |
|
|
| T |
40327946 |
gaaccaatacctttgtgataattttgtaaataatgttgcaaaggctaatgggtctgaaatctttgtaagtagtgggtggttcaatttttggaatgagcgc |
40327847 |
T |
|
| Q |
295 |
aatgat--tgtttgagatgtccggctaaaaataacctgtttggaaggctgaatgaaccatatgaaaaatatcatcactaacaatgtgtcaatattacttg |
392 |
Q |
| |
|
||||| |||||||||| ||||| | ||| ||||| | ||| |||||| ||| ||||| | ||||||||||| | |||||||| || |||| ||| |
|
|
| T |
40327846 |
aatgagagtgtttgagatctccggatcaaagtaaccactatggtaggctgcatggaccattttgaaaatatcatctccgacaatgtgccagtattgtttg |
40327747 |
T |
|
| Q |
393 |
aagaaaatgcaatgaaagccatcgggtcatagggctttctaaggtttcatagagttgagggcatcaaacacttca |
467 |
Q |
| |
|
||||||||||||||||| || || || | ||||||| ||||| |||||||||||| ||||| | ||||||||| |
|
|
| T |
40327746 |
aagaaaatgcaatgaaacccgtcaggaccaggggctttgtaaggcttcatagagttgtgggcagcgaacacttca |
40327672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 95 - 466
Target Start/End: Complemental strand, 19265284 - 19264911
Alignment:
| Q |
95 |
atttcctgcaaaacaattgtgttgtcagtagtgcacctagcaggcggaaaactgctttgatagggaccaataatattagtaagaatatgtctgagacgat |
194 |
Q |
| |
|
||||||||||||||||| | |||||| || | |||| ||||| |||| ||||||| |||||||||||||| ||||| |||||| | || || |||| |
|
|
| T |
19265284 |
atttcctgcaaaacaatggagttgtcttgggtacccctaccaggcaaaaaattgctttggtagggaccaataatgttagtgagaataggccttagccgat |
19265185 |
T |
|
| Q |
195 |
gcaccaaaacttttgtgataattttgtagattatgttggagagactgatgggtctaaaatatttatatgtgctaggaagatcaattttttgaatgagtgc |
294 |
Q |
| |
|
| ||||| || ||||||||||||||||| || |||||| | || || |||||||| |||| || || || | || | ||||||||| ||||||| || |
|
|
| T |
19265184 |
gaaccaatacctttgtgataattttgtaaataatgttgcaaaggctaatgggtctgaaatccttgtaagtagtgggtggttcaatttttggaatgagcgc |
19265085 |
T |
|
| Q |
295 |
aat--gattgtttgagatgtccggctaaaaataacctgtttggaaggctgaatgaaccatatgaaaaatatcatcactaacaatgtgtcaatattacttg |
392 |
Q |
| |
|
||| || |||||||||| ||||| | ||| ||||| | ||| | |||| ||| ||||| | || |||||||| | |||||||| || |||| ||| |
|
|
| T |
19265084 |
aatgagagtgtttgagatctccggatcaaagtaaccactatggtaagctgcatggaccattttgaatatatcatctccgacaatgtgccagtattgtttg |
19264985 |
T |
|
| Q |
393 |
aagaaaatgcaatgaaagccatcgggtcatagggctttctaaggtttcatagagttgagggcatcaaacacttc |
466 |
Q |
| |
|
||||||||||||||||| ||||| || | ||||||| || || |||||||||||||||||| | |||||||| |
|
|
| T |
19264984 |
aagaaaatgcaatgaaacccatcaggaccaggggctttgtatggcttcatagagttgagggcagcgaacacttc |
19264911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 9 - 232
Target Start/End: Complemental strand, 177453 - 177230
Alignment:
| Q |
9 |
aattgacattatcaaaggctttctctagatcaattttgaaagccacatagccatctttcttctttgatctgcgcatgaagtgagtgatttcctgcaaaac |
108 |
Q |
| |
|
|||| ||||| ||||| |||||||| ||||||| ||||||||| || || || | |||| | |||||||| ||||| || ||| |||||||||||||| |
|
|
| T |
177453 |
aattcacattgtcaaaagctttctcaagatcaagtttgaaagcaacgtaaccttttttcctttttgatctccgcataaaatgaacaatttcctgcaaaac |
177354 |
T |
|
| Q |
109 |
aattgtgttgtcagtagtgcacctagcaggcggaaaactgctttgatagggaccaataatattagtaagaatatgtctgagacgatgcaccaaaactttt |
208 |
Q |
| |
|
||| | |||||||| ||||| |||| | || | ||||||||||| |||||||||||||||| | ||||||| | | |||||||||||| | ||||| |
|
|
| T |
177353 |
aatagagttgtcagaagtgcccctaccttgcaggaaactgctttggtagggaccaataatatcattaagaatcggccggagacgatgcacaatgactttg |
177254 |
T |
|
| Q |
209 |
gtgataattttgtagattatgttg |
232 |
Q |
| |
|
|| || ||||||||| |||||||| |
|
|
| T |
177253 |
gtaatgattttgtaggttatgttg |
177230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 82 - 181
Target Start/End: Original strand, 14653943 - 14654042
Alignment:
| Q |
82 |
catgaagtgagtgatttcctgcaaaacaattgtgttgtcagtagtgcacctagcaggcggaaaactgctttgatagggaccaataatattagtaagaata |
181 |
Q |
| |
|
|||||| ||| | ||||||||||||||||| | ||| || | ||||| |||| ||||| |||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
14653943 |
catgaaatgaataatttcctgcaaaacaatagagttatctgcagtgcccctaccaggcagaaaactgctttgatagggaccaataatgttagtaagaata |
14654042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 9 - 222
Target Start/End: Complemental strand, 39012484 - 39012271
Alignment:
| Q |
9 |
aattgacattatcaaaggctttctctagatcaattttgaaagccacatagccatctttcttctttgatctgcgcatgaagtgagtgatttcctgcaaaac |
108 |
Q |
| |
|
|||| ||||||||||||||||| || ||||| | ||||||||||||||| || | ||||| || | | | | ||||||||| |||||||||||||| |
|
|
| T |
39012484 |
aattaacattatcaaaggctttttcaagatctagtttgaaagccacataccctttcttctttttggttttcctcatgaagtgtactatttcctgcaaaac |
39012385 |
T |
|
| Q |
109 |
aattgtgttgtcagtagtgcacctagcaggcggaaaactgctttgatagggaccaataatattagtaagaatatgtctgagacgatgcaccaaaactttt |
208 |
Q |
| |
|
||| | |||||||| |||| |||| |||| ||||||| ||||||||||| ||||| ||| | ||||||| ||||||| || || ||||| ||||| |
|
|
| T |
39012384 |
aatcgaattgtcagtggtgcccctaccaggtagaaaactactttgataggggccaatgataacattaagaattggtctgaggcggtgaaccaagacttta |
39012285 |
T |
|
| Q |
209 |
gtgataattttgta |
222 |
Q |
| |
|
||||| | |||||| |
|
|
| T |
39012284 |
gtgatgagtttgta |
39012271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 11 - 113
Target Start/End: Original strand, 1487510 - 1487612
Alignment:
| Q |
11 |
ttgacattatcaaaggctttctctagatcaattttgaaagccacatagccatctttcttctttgatctgcgcatgaagtgagtgatttcctgcaaaacaa |
110 |
Q |
| |
|
|||||||||||||| |||||||| ||||||| ||| |||||||||||||| | ||||| || ||| | | |||||||||| |||||||||||||||| |
|
|
| T |
1487510 |
ttgacattatcaaaagctttctcgagatcaagtttaaaagccacatagcctttcttctttttggatattctcatgaagtgaacaatttcctgcaaaacaa |
1487609 |
T |
|
| Q |
111 |
ttg |
113 |
Q |
| |
|
||| |
|
|
| T |
1487610 |
ttg |
1487612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 366 - 460
Target Start/End: Complemental strand, 16322044 - 16321950
Alignment:
| Q |
366 |
tcactaacaatgtgtcaatattacttgaagaaaatgcaatgaaagccatcgggtcatagggctttctaaggtttcatagagttgagggcatcaaa |
460 |
Q |
| |
|
|||| ||||||||| || |||| || |||||||||||||||||||||||||| | | ||||| || |||||||| |||||||||||| |||| |
|
|
| T |
16322044 |
tcaccaacaatgtgccagtattgtttaaagaaaatgcaatgaaagccatcgggaccaggtgctttgtagggtttcatggagttgagggcagcaaa |
16321950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 222
Target Start/End: Complemental strand, 16322317 - 16322190
Alignment:
| Q |
95 |
atttcctgcaaaacaattgtgttgtcagtagtgcacctagcaggcggaaaactgctttgatagggaccaataatattagtaagaatatgtctgagacgat |
194 |
Q |
| |
|
||||||||||||| ||||| |||||||| ||| | |||| |||| |||| || ||||||||||| ||||||| |||| | || | | | || || |||| |
|
|
| T |
16322317 |
atttcctgcaaaataattgagttgtcagcagtacccctaccaggtagaaagctactttgataggggccaataagattattgaggaaaggcctaaggcgat |
16322218 |
T |
|
| Q |
195 |
gcaccaaaacttttgtgataattttgta |
222 |
Q |
| |
|
|||| ||||| || ||||| |||||||| |
|
|
| T |
16322217 |
gcactaaaaccttggtgatgattttgta |
16322190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 222
Target Start/End: Original strand, 42403496 - 42403623
Alignment:
| Q |
95 |
atttcctgcaaaacaattgtgttgtcagtagtgcacctagcaggcggaaaactgctttgatagggaccaataatattagtaagaatatgtctgagacgat |
194 |
Q |
| |
|
||||||||||||||||||| || |||| ||| | |||| |||| ||||||| ||||| |||| |||||||||||| |||| | | |||| || || | |
|
|
| T |
42403496 |
atttcctgcaaaacaattgaattatcagaagtacccctaccaggtagaaaactactttggcaggggccaataatattattaaggagaggtctaaggcgtt |
42403595 |
T |
|
| Q |
195 |
gcaccaaaacttttgtgataattttgta |
222 |
Q |
| |
|
|||| ||||| || ||||| |||||||| |
|
|
| T |
42403596 |
gcactaaaaccttagtgatgattttgta |
42403623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 330 - 442
Target Start/End: Complemental strand, 39012161 - 39012049
Alignment:
| Q |
330 |
gtttggaaggctgaatgaaccatatgaaaaatatcatcactaacaatgtgtcaatattacttgaagaaaatgcaatgaaagccatcgggtcatagggctt |
429 |
Q |
| |
|
|||||||| || || || |||||||||||||| ||||| | || |||||| ||||||| ||| || || ||||| || |||||||| |||| |||||| |
|
|
| T |
39012161 |
gtttggaaagcagattggaccatatgaaaaatgtcatctccaataatgtgccaatattgcttaaaaaatatgcattggaagccatctggtccaggggctt |
39012062 |
T |
|
| Q |
430 |
tctaaggtttcat |
442 |
Q |
| |
|
| || |||||||| |
|
|
| T |
39012061 |
tgtagggtttcat |
39012049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 76; Significance: 9e-35; HSPs: 13)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 17718543 - 17718766
Alignment:
| Q |
1 |
aaaatccaaattgacattatcaaaggctttctctagatcaattttgaaagccacatagccatctttcttctttgatctgcgcatgaagtgagtgatttcc |
100 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| || || | |||||||||||||| || | ||||||||| ||||| | |||| | ||| |||||||| |
|
|
| T |
17718543 |
aaaatcccaattgacattatcaaaggctttctcaaggtctagcttgaaagccacataaccttttttcttcttagatcttctcatgtaatgaatgatttcc |
17718642 |
T |
|
| Q |
101 |
tgcaaaacaattgtgttgtcagtagtgcacctagcaggcggaaaactgctttgatagggaccaataatattagtaagaatatgtctgagacgatgcacca |
200 |
Q |
| |
|
||||||||||| | ||| |||| ||| | |||| ||||| |||| |||||||| || || |||||||||||| |||| ||| ||||||| || || |||| |
|
|
| T |
17718643 |
tgcaaaacaatggagttatcagaagttcccctaccaggcagaaagctgctttggtaagggccaataatattattaaggataggtctgagccgctgaacca |
17718742 |
T |
|
| Q |
201 |
aaacttttgtgataattttgtaga |
224 |
Q |
| |
|
| ||||| || || |||||||||| |
|
|
| T |
17718743 |
agactttagtaatgattttgtaga |
17718766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 19019772 - 19019995
Alignment:
| Q |
1 |
aaaatccaaattgacattatcaaaggctttctctagatcaattttgaaagccacatagccatctttcttctttgatctgcgcatgaagtgagtgatttcc |
100 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| || || | |||||||||||||| || | ||||||||| ||||| | |||| | ||| |||||||| |
|
|
| T |
19019772 |
aaaatcccaattgacattatcaaaggctttctcaaggtctagcttgaaagccacataaccttttttcttcttagatcttctcatgtaatgaatgatttcc |
19019871 |
T |
|
| Q |
101 |
tgcaaaacaattgtgttgtcagtagtgcacctagcaggcggaaaactgctttgatagggaccaataatattagtaagaatatgtctgagacgatgcacca |
200 |
Q |
| |
|
||||||||||| | ||| |||| ||| | |||| ||||| |||| |||||||| || || |||||||||||| |||| ||| ||||||| || || |||| |
|
|
| T |
19019872 |
tgcaaaacaatggagttatcagaagttcccctaccaggcagaaagctgctttggtaagggccaataatattattaaggataggtctgagccgctgaacca |
19019971 |
T |
|
| Q |
201 |
aaacttttgtgataattttgtaga |
224 |
Q |
| |
|
| ||||| || || |||||||||| |
|
|
| T |
19019972 |
agactttagtaatgattttgtaga |
19019995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 44 - 355
Target Start/End: Complemental strand, 23424420 - 23424107
Alignment:
| Q |
44 |
ttgaaagccacatagccatctttcttctttgatctgcgcatgaagtgagtgatttcctgcaaaacaattgtgttgtcagtagtgcacctagcaggcggaa |
143 |
Q |
| |
|
|||||||| ||||| || | ||| |||||||| | | |||||||||| | ||||||||||||||||||| ||| |||| ||| | |||| |||| ||| |
|
|
| T |
23424420 |
ttgaaagcaacataacctttcttcctctttgatttcctcatgaagtgaataatttcctgcaaaacaattgagttatcagaagttcccctactaggcagaa |
23424321 |
T |
|
| Q |
144 |
aactgctttgatagggaccaataatattagtaagaatatgtctgagacgatgcaccaaaacttttgtgataattttgtagattatgttggagagactgat |
243 |
Q |
| |
|
| |||||||| | || ||||||| |||| | || ||| |||||||||||||||| | |||||| |||||||| ||||||||||||||| | ||||| || |
|
|
| T |
23424320 |
atctgctttggcaagggccaataagattactgaggataggtctgagacgatgcacaagaactttagtgataatcttgtagattatgttgcatagacttat |
23424221 |
T |
|
| Q |
244 |
gggtctaaaatatttatatgtgctaggaagatcaattttttgaatgagtgcaat--gattgtttgagatgtccggctaaaaataacctgtttggaaggct |
341 |
Q |
| |
|
||||||||||| ||| || ||| | || || |||||| ||||||||||||| || ||||||| || ||||| | ||| | |||||||||||||||| |
|
|
| T |
23424220 |
gggtctaaaatctttgtaagtggtgggggtttcgatttttggaatgagtgcaatgagagtgtttgaaatctccggatcaaagttacctgtttggaaggct |
23424121 |
T |
|
| Q |
342 |
gaatgaaccatatg |
355 |
Q |
| |
|
||| |||||||| |
|
|
| T |
23424120 |
ttatggaccatatg |
23424107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 95 - 463
Target Start/End: Original strand, 38647461 - 38647831
Alignment:
| Q |
95 |
atttcctgcaaaacaattgtgttgtcagtagtgcacctagcaggcggaaaactgctttgatagggaccaataatattagtaagaatatgtctgagacgat |
194 |
Q |
| |
|
||||||||||||||||||| || |||| || | ||| ||||| ||||| ||||||||||| | |||||||||||| | |||||| |||||||||| | |
|
|
| T |
38647461 |
atttcctgcaaaacaattgaattatcagatgttcctctaccaggcagaaaaatgctttgatagaggccaataatattattgagaataggtctgagacggt |
38647560 |
T |
|
| Q |
195 |
gcaccaaaacttttgtgataattttgtagattatgttggagagactgatgggtctaaaatatttatatgtgctaggaag-atcaattttttgaatgagtg |
293 |
Q |
| |
|
|||| | |||||| || ||||| ||||||||||||||| ||||||| |||||||| || | ||| || ||| | ||| | ||||||||| ||||||||| |
|
|
| T |
38647561 |
gcacaagaactttagtaataatcttgtagattatgttgcagagacttatgggtctgaagtctttgtaagtg-ttggatgaatcaattttcggaatgagtg |
38647659 |
T |
|
| Q |
294 |
caat--gattgtttgagatgtccggctaaaaataacctgtttggaaggctgaatgaaccatatgaaaaatatcatcactaacaatgtgtcaatattactt |
391 |
Q |
| |
|
|||| || ||||||| || ||||| | ||||| |||||| || || |||||||| |||||||| |||| ||||| | || ||||| ||||||| || |
|
|
| T |
38647660 |
caataagagtgtttgaaatctccggatcaaaatgacctgtgtgaaaagctgaatggaccatatggtaaatgtcatctccgactatgtgccaatattgttt |
38647759 |
T |
|
| Q |
392 |
gaagaaaatgcaatgaaagccatcgggtcatagggctttctaaggtttcatagagttgagggcatcaaacac |
463 |
Q |
| |
|
|||||| || ||||| || ||||| || | | ||||| ||||||||||| ||||| || ||| ||||||| |
|
|
| T |
38647760 |
gaagaagatacaatggaaaccatctgggccgggtgctttgtaaggtttcatggagttaagtgcagcaaacac |
38647831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 53608485 - 53608708
Alignment:
| Q |
1 |
aaaatccaaattgacattatcaaaggctttctctagatcaattttgaaagccacatagccatctttcttctttgatctgcgcatgaagtgagtgatttcc |
100 |
Q |
| |
|
||||||| |||||||||||||||| |||||||| ||||| | ||||||||||||||||| | ||||||||||||||| ||| | ||| | |||||| |
|
|
| T |
53608485 |
aaaatcccaattgacattatcaaaagctttctcaagatcgagcttgaaagccacatagccttttttcttctttgatcttttcatataatgaataatttcc |
53608584 |
T |
|
| Q |
101 |
tgcaaaacaattgtgttgtcagtagtgcacctagcaggcggaaaactgctttgatagggaccaataatattagtaagaatatgtctgagacgatgcacca |
200 |
Q |
| |
|
||||||||||| | ||| |||| ||| | |||| ||||| |||| |||||||| | || |||||||||||| |||| ||| | || ||||| || |||| |
|
|
| T |
53608585 |
tgcaaaacaatggagttatcagaagttcccctaccaggcagaaagctgctttggcaagggccaataatattattaaggataggcctaagacgctgaacca |
53608684 |
T |
|
| Q |
201 |
aaacttttgtgataattttgtaga |
224 |
Q |
| |
|
||||||| || |||||||| |||| |
|
|
| T |
53608685 |
aaactttagtaataattttataga |
53608708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 2 - 169
Target Start/End: Original strand, 11889925 - 11890092
Alignment:
| Q |
2 |
aaatccaaattgacattatcaaaggctttctctagatcaattttgaaagccacatagccatctttcttctttgatctgcgcatgaagtgagtgatttcct |
101 |
Q |
| |
|
|||||| | |||||||||||||| ||||||||||| |||| ||||||||| |||||||| | |||||||| ||||| ||| ||||| ||||||| |
|
|
| T |
11889925 |
aaatcccagttgacattatcaaaagctttctctaggtcaagtttgaaagctacatagcctttcttcttcttagatctctacataaagtgtacaatttcct |
11890024 |
T |
|
| Q |
102 |
gcaaaacaattgtgttgtcagtagtgcacctagcaggcggaaaactgctttgatagggaccaataata |
169 |
Q |
| |
|
|||||||||| |||||||||| |||| |||| | ||| | || |||||||| |||||||| |||||| |
|
|
| T |
11890025 |
gcaaaacaatagtgttgtcagccgtgcccctacctggcaggaagctgctttggtagggacctataata |
11890092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 82 - 181
Target Start/End: Complemental strand, 11897032 - 11896933
Alignment:
| Q |
82 |
catgaagtgagtgatttcctgcaaaacaattgtgttgtcagtagtgcacctagcaggcggaaaactgctttgatagggaccaataatattagtaagaata |
181 |
Q |
| |
|
|||||| ||| | ||||||||||||||||| | ||| || | ||||| |||| ||||| |||| ||||||||||||||||||||||| |||||||||||| |
|
|
| T |
11897032 |
catgaaatgaataatttcctgcaaaacaatagagttatctgcagtgcccctaccaggcagaaagctgctttgatagggaccaataatgttagtaagaata |
11896933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 95 - 398
Target Start/End: Original strand, 15473725 - 15474029
Alignment:
| Q |
95 |
atttcctgcaaaacaattgtgttgtcagtagtgcacctagcaggcggaaaactgctttgatagggaccaataatattagtaagaatatgtctgagacgat |
194 |
Q |
| |
|
||||||||||||||||||| ||| |||| ||| | |||| ||||| ||||||| ||||||||||| |||||||||||| |||||| | | || || | || |
|
|
| T |
15473725 |
atttcctgcaaaacaattgagttatcagaagtac-cctaccaggcagaaaactactttgataggggccaataatattattaagaaaaggcctaaggctat |
15473823 |
T |
|
| Q |
195 |
gcaccaaaacttttgtgataattttgtagattatgttggagagactgatgggtctaaaatatttatatgtgctaggaagatcaattttttgaatgagtgc |
294 |
Q |
| |
|
|||| ||||| || ||||| |||||||| | ||| ||| | || | |||||||| |||| ||| || ||| | ||| ||||||||| | || ||||| |
|
|
| T |
15473824 |
gcactaaaaccttagtgatgattttgtaaactatattgcaaaggataatgggtctgaaatctttgtaagtgtttggagagtcaatttttgggattagtgc |
15473923 |
T |
|
| Q |
295 |
aat--gattgtttgagatgtccggctaaaaataacctgtttggaaggctgaatgaaccatatgaaaaatatcatcactaacaatgtgtcaatattacttg |
392 |
Q |
| |
|
||| || |||| ||||| ||||| | ||||| ||||||| ||||||| || || || | || ||||| || |||| ||||||||| || |||| ||| |
|
|
| T |
15473924 |
aatgagagtgttcgagatctccggatcaaaatgacctgttaggaaggcggattggactaagtggaaaatgtcgtcaccaacaatgtgccagtattgtttg |
15474023 |
T |
|
| Q |
393 |
aagaaa |
398 |
Q |
| |
|
|||||| |
|
|
| T |
15474024 |
aagaaa |
15474029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 9 - 222
Target Start/End: Original strand, 3659808 - 3660021
Alignment:
| Q |
9 |
aattgacattatcaaaggctttctctagatcaattttgaaagccacatagccatctttcttctttgatctgcgcatgaagtgagtgatttcctgcaaaac |
108 |
Q |
| |
|
|||| ||||||||||||||||| || ||||| | ||||||||||||||| || | ||||| || | | | | ||||||||| |||||||||||||| |
|
|
| T |
3659808 |
aattaacattatcaaaggctttttcaagatccagtttgaaagccacataccctttcttctttttggttttcctcatgaagtgtactatttcctgcaaaac |
3659907 |
T |
|
| Q |
109 |
aattgtgttgtcagtagtgcacctagcaggcggaaaactgctttgatagggaccaataatattagtaagaatatgtctgagacgatgcaccaaaactttt |
208 |
Q |
| |
|
||| | |||||||| |||| |||| |||| ||||||| ||||||||||| ||||| ||| | ||||||| ||||||| || || ||||| ||||| |
|
|
| T |
3659908 |
aatcgaattgtcagtggtgcccctaccaggtagaaaactactttgataggggccaatgataacattaagaattggtctgaggcggtgaaccaagacttta |
3660007 |
T |
|
| Q |
209 |
gtgataattttgta |
222 |
Q |
| |
|
||||| | |||||| |
|
|
| T |
3660008 |
gtgatgagtttgta |
3660021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 95 - 215
Target Start/End: Original strand, 49150049 - 49150169
Alignment:
| Q |
95 |
atttcctgcaaaacaattgtgttgtcagtagtgcacctagcaggcggaaaactgctttgatagggaccaataatattagtaagaatatgtctgagacgat |
194 |
Q |
| |
|
||||||||||||||||||| ||||||| |||||| |||| ||||| |||||||||| | ||||||||| || ||| || |||| | | |||||||| | |
|
|
| T |
49150049 |
atttcctgcaaaacaattgagttgtcattagtgcccctaccaggcagaaaactgctctaatagggaccgattataatattaaggagcggcctgagacggt |
49150148 |
T |
|
| Q |
195 |
gcaccaaaacttttgtgataa |
215 |
Q |
| |
|
| ||||| ||||| ||||||| |
|
|
| T |
49150149 |
gaaccaagactttggtgataa |
49150169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 97 - 169
Target Start/End: Original strand, 55025080 - 55025152
Alignment:
| Q |
97 |
ttcctgcaaaacaattgtgttgtcagtagtgcacctagcaggcggaaaactgctttgatagggaccaataata |
169 |
Q |
| |
|
||||||||||||||||| |||||||| |||| |||| |||| ||||||| ||||||||||| ||||||||| |
|
|
| T |
55025080 |
ttcctgcaaaacaattgaattgtcagtggtgcccctaccaggtagaaaactactttgataggggccaataata |
55025152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 11 - 181
Target Start/End: Original strand, 26432890 - 26433060
Alignment:
| Q |
11 |
ttgacattatcaaaggctttctctagatcaattttgaaagccacatagccatctttcttctttgatctgcgcatgaagtgagtgatttcctgcaaaacaa |
110 |
Q |
| |
|
||||| || ||||| |||||||||||||||| |||||||| || | || | |||| |||| ||||| |||||| ||| |||||||||||||||| |
|
|
| T |
26432890 |
ttgacgttgtcaaaagctttctctagatcaagcttgaaagctacgaaaccctttttcctcttcgatctcttcatgaaatgaaaaatttcctgcaaaacaa |
26432989 |
T |
|
| Q |
111 |
ttgtgttgtcagtagtgcacctagcaggcggaaaactgctttgatagggaccaataatattagtaagaata |
181 |
Q |
| |
|
| | ||| || | || | |||| ||||| | ||||||||||||||||| |||||||| |||| ||||||| |
|
|
| T |
26432990 |
tagagttatctgcggtacccctaccaggcaggaaactgctttgataggggccaataatgttagaaagaata |
26433060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 326 - 442
Target Start/End: Original strand, 3660127 - 3660243
Alignment:
| Q |
326 |
acctgtttggaaggctgaatgaaccatatgaaaaatatcatcactaacaatgtgtcaatattacttgaagaaaatgcaatgaaagccatcgggtcatagg |
425 |
Q |
| |
|
||| |||||||| || || || |||||||||||||| ||||| | || |||||| ||||||| ||| || || ||||| || |||||||| |||| || |
|
|
| T |
3660127 |
accagtttggaaagcagattggaccatatgaaaaatgtcatctccaataatgtgccaatattgcttaaaaaatatgcattggaagccatctggtccaggg |
3660226 |
T |
|
| Q |
426 |
gctttctaaggtttcat |
442 |
Q |
| |
|
||||| || |||||||| |
|
|
| T |
3660227 |
gctttgtagggtttcat |
3660243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0214 (Bit Score: 72; Significance: 2e-32; HSPs: 1)
Name: scaffold0214
Description:
Target: scaffold0214; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 8929 - 8678
Alignment:
| Q |
1 |
aaaatccaaattgacattatcaaaggctttctctagatcaattttgaaagccacatagccatctttcttctttgatctgcgcatgaagtgagtgatttcc |
100 |
Q |
| |
|
||||||| | || ||||||||||| |||||||||| ||| || || |||||||| || || | |||||||| ||||| |||||| ||||| | |||||| |
|
|
| T |
8929 |
aaaatcccagttaacattatcaaaagctttctctaaatcgatcttaaaagccacgtatcctttcttcttcttggatcttcgcatgtagtgaataatttcc |
8830 |
T |
|
| Q |
101 |
tgcaaaacaattgtgttgtcagtagtgcacctagcaggcggaaaactgctttgatagggaccaataatattagtaagaatatgtctgagacgatgcacca |
200 |
Q |
| |
|
||||||||||| | |||||||| |||| |||| ||||| | ||||||||||| || ||||||||||||| | |||| ||| ||||||| || || || | |
|
|
| T |
8829 |
tgcaaaacaatggcattgtcagtggtgcccctaccaggcaggaaactgctttggtaaggaccaataatatcattaaggataggtctgaggcggtggacaa |
8730 |
T |
|
| Q |
201 |
aaacttttgtgataattttgtagattatgttggagagactgatgggtctaaa |
252 |
Q |
| |
|
||| || ||||||||||||||||| ||||| | || || ||||||||||| |
|
|
| T |
8729 |
gaaccttagtgataattttgtagatgatgttacaaaggctaatgggtctaaa |
8678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 53; Significance: 5e-21; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 20 - 180
Target Start/End: Complemental strand, 14759868 - 14759708
Alignment:
| Q |
20 |
tcaaaggctttctctagatcaattttgaaagccacatagccatctttcttctttgatctgcgcatgaagtgagtgatttcctgcaaaacaattgtgttgt |
119 |
Q |
| |
|
||||| ||||| || || |||||||||||||| ||| | || | ||||| || ||||| | |||||| ||| | ||||||||||||||||| | ||| | |
|
|
| T |
14759868 |
tcaaaagctttttccaggtcaattttgaaagctacaaaccccttcttctttttggatctcctcatgaaatgaattatttcctgcaaaacaatggagttat |
14759769 |
T |
|
| Q |
120 |
cagtagtgcacctagcaggcggaaaactgctttgatagggaccaataatattagtaagaat |
180 |
Q |
| |
|
||| ||||| ||| ||||| ||||||||||||| ||||| |||||||||||||||||||| |
|
|
| T |
14759768 |
cagaagtgcccctcccaggcagaaaactgctttggtaggggccaataatattagtaagaat |
14759708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 14 - 242
Target Start/End: Complemental strand, 26587176 - 26586948
Alignment:
| Q |
14 |
acattatcaaaggctttctctagatcaattttgaaagccacatagccatctttcttctttgatctgcgcatgaagtgagtgatttcctgcaaaacaattg |
113 |
Q |
| |
|
||||| ||||| |||||||| ||||||| |||||||| |||||||| | ||| |||| ||| | | ||| ||||||| |||||||||||||||| | |
|
|
| T |
26587176 |
acattgtcaaatgctttctcaagatcaagcttgaaagcaacatagcctttcttcctcttagatttcctcataaagtgagcaatttcctgcaaaacaaaag |
26587077 |
T |
|
| Q |
114 |
tgttgtcagtagtgcacctagcaggcggaaaactgctttgatagggaccaataatattagtaagaatatgtctgagacgatgcaccaaaacttttgtgat |
213 |
Q |
| |
|
||||||| ||||| |||| | ||| |||||||| |||| ||||||||||||||||| |||| || ||||||| ||||| || | ||||| ||||| |
|
|
| T |
26587076 |
agttgtcataagtgcccctacctggcagaaaactgatttggtagggaccaataatattgttaaggatcggtctgaggcgatggacaaggactttggtgat |
26586977 |
T |
|
| Q |
214 |
aattttgtagattatgttggagagactga |
242 |
Q |
| |
|
||||| ||| |||||||| |||| |||| |
|
|
| T |
26586976 |
gattttataggttatgttgcagaggctga |
26586948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 11 - 351
Target Start/End: Complemental strand, 38348422 - 38348080
Alignment:
| Q |
11 |
ttgacattatcaaaggctttctctagatcaattttgaaagccacatagccatctttcttctttgatctgcgcatgaagtgagtgatttcctgcaaaacaa |
110 |
Q |
| |
|
|||||||||||||| ||||| |||||||| ||||||||||| ||| | || | |||||| |||||| | | |||| || ||||||||||||| || |
|
|
| T |
38348422 |
ttgacattatcaaaagctttttctagatccattttgaaagcaacacaaccttttttcttttttgattttctcatgtgatggacaatttcctgcaaaataa |
38348323 |
T |
|
| Q |
111 |
ttgtgttgtcagtagtgcacctagcaggcggaaaactgctttgatagggaccaataatattagtaagaatatgtctgagacgatgcaccaaaacttttgt |
210 |
Q |
| |
|
| | || |||| ||| | |||| ||||| | || |||||||||||||| |||||||||||| ||||||| |||| | | || |||||||||| || |
|
|
| T |
38348322 |
tagaattatcagaagttcccctaccaggcaggaagctgctttgataggggccaataatattattaagaatcggtctcaatctgtgaaccaaaacttaggt |
38348223 |
T |
|
| Q |
211 |
gataattttgtagattatgttggagagactgatgggtctaaaatatttatatgtgctaggaagatcaattttttgaatgagtgcaat--gattgtttgag |
308 |
Q |
| |
|
|||||||||||| | |||||| | ||||| || ||||| |||| ||| ||| | ||||| ||||| ||| ||||||||||||| || | ||||| |
|
|
| T |
38348222 |
gataattttgtaaacaatgttgcacagacttataggtctgaaatctttgtatcggttaggagtgtcaatctttggaatgagtgcaatgagagtatttgaa |
38348123 |
T |
|
| Q |
309 |
atgtccggctaaaaataacctgtttggaaggctgaatgaacca |
351 |
Q |
| |
|
|| || || | ||||| ||| ||||||||||||||||||||| |
|
|
| T |
38348122 |
atctctggatcaaaatgaccattttggaaggctgaatgaacca |
38348080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 20 - 180
Target Start/End: Complemental strand, 26973399 - 26973239
Alignment:
| Q |
20 |
tcaaaggctttctctagatcaattttgaaagccacatagccatctttcttctttgatctgcgcatgaagtgagtgatttcctgcaaaacaattgtgttgt |
119 |
Q |
| |
|
||||| ||||| || || |||| ||||||||| ||| | || | ||||| || ||||| | |||||| ||| | ||||||||||||||||| | ||| | |
|
|
| T |
26973399 |
tcaaaagctttttccaggtcaagtttgaaagctacaaaccccttcttctttttggatctcctcatgaaatgaattatttcctgcaaaacaatggagttat |
26973300 |
T |
|
| Q |
120 |
cagtagtgcacctagcaggcggaaaactgctttgatagggaccaataatattagtaagaat |
180 |
Q |
| |
|
||| |||| ||| ||||| ||||||||||||| ||||| |||||||||||||||||||| |
|
|
| T |
26973299 |
cagaggtgcccctcccaggcagaaaactgctttggtaggggccaataatattagtaagaat |
26973239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 82 - 181
Target Start/End: Original strand, 23132848 - 23132947
Alignment:
| Q |
82 |
catgaagtgagtgatttcctgcaaaacaattgtgttgtcagtagtgcacctagcaggcggaaaactgctttgatagggaccaataatattagtaagaata |
181 |
Q |
| |
|
|||||| ||| | ||||||||||||||||| | ||| || | ||||| |||| || || |||| ||||||||||||||||||||||| |||||||||||| |
|
|
| T |
23132848 |
catgaaatgaataatttcctgcaaaacaatagagttatctgcagtgcccctaccaagcagaaagctgctttgatagggaccaataatgttagtaagaata |
23132947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 52; Significance: 2e-20; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 95 - 254
Target Start/End: Complemental strand, 7817003 - 7816844
Alignment:
| Q |
95 |
atttcctgcaaaacaattgtgttgtcagtagtgcacctagcaggcggaaaactgctttgatagggaccaataatattagtaagaatatgtctgagacgat |
194 |
Q |
| |
|
||||||||||||||||| | ||| || | ||| | |||| ||||| ||||||||||||| || || |||||||| |||||||||||| | || || || | |
|
|
| T |
7817003 |
atttcctgcaaaacaatagagttatctgaagtacccctaccaggcagaaaactgctttggtaagggccaataatgttagtaagaataggccttagtcggt |
7816904 |
T |
|
| Q |
195 |
gcaccaaaacttttgtgataattttgtagattatgttggagagactgatgggtctaaaat |
254 |
Q |
| |
|
| |||||||| || ||||| ||||||||||| || ||| ||||| |||||||||| |||| |
|
|
| T |
7816903 |
ggaccaaaaccttagtgattattttgtagataatattgcagagattgatgggtctgaaat |
7816844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 64 - 246
Target Start/End: Complemental strand, 23944917 - 23944735
Alignment:
| Q |
64 |
tttcttctttgatctgcgcatgaagtgagtgatttcctgcaaaacaattgtgttgtcagtagtgcacctagcaggcggaaaactgctttgatagggacca |
163 |
Q |
| |
|
||||||||| ||||| | |||| | ||| | ||||||||||||||||| | || |||| ||| | |||| ||||| |||| |||||||| || || || |
|
|
| T |
23944917 |
tttcttcttagatcttctcatgtaatgaataatttcctgcaaaacaatggaattatcagaagttcccctaccaggcagaaagctgctttggtaagggcct |
23944818 |
T |
|
| Q |
164 |
ataatattagtaagaatatgtctgagacgatgcaccaaaacttttgtgataattttgtagattatgttggagagactgatggg |
246 |
Q |
| |
|
||||||||| |||||||| |||||||||| || ||||||||||| || || ||||||||||| || ||| | | ||||||||| |
|
|
| T |
23944817 |
ataatattattaagaataggtctgagacgctggaccaaaactttagtaatgattttgtagatgatattgcataaactgatggg |
23944735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 280 - 467
Target Start/End: Complemental strand, 7813510 - 7813321
Alignment:
| Q |
280 |
tttttgaatgagtgcaatgattgt--ttgagatgtccggctaaaaataacctgtttggaaggctgaatgaaccatatgaaaaatatcatcactaacaatg |
377 |
Q |
| |
|
|||| ||||||||||||||| || ||||||| | ||| | ||||||||| ||||||||||||| || ||||||||||||||||||| | |||||| |
|
|
| T |
7813510 |
ttttggaatgagtgcaatgagagtgcttgagatcttcggatcaaaataaccagtttggaaggctgtttggaccatatgaaaaatatcattgccaacaata |
7813411 |
T |
|
| Q |
378 |
tgtcaatattacttgaagaaaatgcaatgaaagccatcgggtcatagggctttctaaggtttcatagagttgagggcatcaaacacttca |
467 |
Q |
| |
|
|| || || | |||||||| || ||||| || || || |||| | ||||||| |||||||||||||| ||||||| | |||| |||||| |
|
|
| T |
7813410 |
tgccagtactgtttgaagaagatacaatggaaaccgtcaggtcctggggctttgtaaggtttcatagacttgagggtagcaaaaacttca |
7813321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 95 - 451
Target Start/End: Original strand, 6641295 - 6641653
Alignment:
| Q |
95 |
atttcctgcaaaacaattgtgttgtcagtagtgcacctagcaggcggaaaactgctttgatagggaccaataatattagtaagaatatgtctgagacgat |
194 |
Q |
| |
|
||||||||||||| ||||| ||| ||| ||||| |||| ||| ||||||| ||||||||||| |||||||||||| |||||| | || || |||| |
|
|
| T |
6641295 |
atttcctgcaaaataattgagttatcataagtgcccctacgaggtagaaaactactttgataggggccaataatattattaagaaggggccttaggcgat |
6641394 |
T |
|
| Q |
195 |
gcaccaaaacttttgtgataattttgtagattatgttggagagactgatgggtctaaaatatttatatgtgctaggaagatcaattttttgaatgagtgc |
294 |
Q |
| |
|
| || ||||| || | ||| |||||||| | ||| ||| | |||||||||||||| |||| ||| || ||| | ||| ||||||||| | || | ||| |
|
|
| T |
6641395 |
gtactaaaaccttagcgatgattttgtaaactatattgcaaagactgatgggtctgaaatctttgtaagtgtttggagaatcaattttcgggatcaatgc |
6641494 |
T |
|
| Q |
295 |
aat--gattgtttgagatgtccggctaaaaataacctgtttggaaggctgaatgaaccatatgaaaaatatcatcactaacaatgtgtcaatattacttg |
392 |
Q |
| |
|
||| || |||||||||| ||||| | ||||| || |||| ||||||| || | || | ||| ||||| ||||||| |||| |||| || |||| || |
|
|
| T |
6641495 |
aatgagagtgtttgagatctccggatcaaaatgacttgttaggaaggcggagcggactaaatggaaaatgtcatcaccaacattgtgccagtattgtatg |
6641594 |
T |
|
| Q |
393 |
aagaaaatgcaatgaaagccatcgggtcatagggctttctaaggtttcatagagttgag |
451 |
Q |
| |
|
|||||| |||| ||||| ||||| || | ||||||| ||| ||||||||||| |||| |
|
|
| T |
6641595 |
aagaaattgcagtgaaaaccatcagggccaggggctttgtaaagtttcatagagctgag |
6641653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 326 - 415
Target Start/End: Complemental strand, 23944653 - 23944564
Alignment:
| Q |
326 |
acctgtttggaaggctgaatgaaccatatgaaaaatatcatcactaacaatgtgtcaatattacttgaagaaaatgcaatgaaagccatc |
415 |
Q |
| |
|
|||||| ||||||||||| ||||||| | | ||||||||||| | |||||||||||| |||| ||||||||| || || ||||| ||||| |
|
|
| T |
23944653 |
acctgtatggaaggctgagtgaaccaaacggaaaatatcatctccaacaatgtgtcagtattgcttgaagaagatacattgaaaaccatc |
23944564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 169
Target Start/End: Original strand, 23620814 - 23620974
Alignment:
| Q |
9 |
aattgacattatcaaaggctttctctagatcaattttgaaagccacatagccatctttcttctttgatctgcgcatgaagtgagtgatttcctgcaaaac |
108 |
Q |
| |
|
|||||||||||||||| || ||||| || |||| ||||||||||||||| || | |||| | || | || |||||||| || |||||||||||||| |
|
|
| T |
23620814 |
aattgacattatcaaaagcattctcaaggtcaagtttgaaagccacatatccttttttccttttgaacctccgcatgaaatggacaatttcctgcaaaac |
23620913 |
T |
|
| Q |
109 |
aattgtgttgtcagtagtgcacctagcaggcggaaaactgctttgatagggaccaataata |
169 |
Q |
| |
|
||| | ||||||| ||||| ||| | || |||||| |||||| ||||||||||||||| |
|
|
| T |
23620914 |
aatagagttgtcaaaagtgcctctaccttgcagaaaaccgctttggtagggaccaataata |
23620974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0036 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: scaffold0036
Description:
Target: scaffold0036; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 82 - 406
Target Start/End: Complemental strand, 75791 - 75467
Alignment:
| Q |
82 |
catgaagtgagtgatttcctgcaaaacaattgtgttgtcagtagtgcacctagcaggcggaaaactgctttgatagggaccaataatattagtaagaata |
181 |
Q |
| |
|
|||||||||| | ||||||||||||||||| ||| || | ||||| |||| ||||| | |||| ||||||||||| |||||||| ||||| |||||| |
|
|
| T |
75791 |
catgaagtgaattatttcctgcaaaacaataaagttatctgaagtgcccctaccaggcaaacaactactttgataggggccaataatgttagtgagaata |
75692 |
T |
|
| Q |
182 |
tgtctgagacgatgcaccaaaacttttgtgataattttgtagattatgttggagagactgatgggtctaaaatatttatatgtgctaggaagatcaattt |
281 |
Q |
| |
|
| || | || || ||||||| ||||||||||||||||| || ||| || | || |||||||||| |||| ||| || || |||| | ||||||| |
|
|
| T |
75691 |
ggccttaaccggtgaaccaaaa-atttgtgataattttgtaaataatgatgcaaaggttgatgggtctgaaatctttgtaagtagtagg-ggttcaattt |
75594 |
T |
|
| Q |
282 |
tttgaatgagtgcaat--gattgtttgagatgtccggctaaaaataacctgtttggaaggctgaatgaaccatatgaaaaatatcatcactaacaatgtg |
379 |
Q |
| |
|
| || ||| ||||| || |||||||||| ||| | | ||| ||||| | ||| | |||| || ||||| || ||||||||||||| ||||||||| |
|
|
| T |
75593 |
tcgaaaagagcgcaatgagagtgtttgagatctccagatcaaagtaaccattatgggaagctgcttggaccatttggaaaatatcatcaccaacaatgtg |
75494 |
T |
|
| Q |
380 |
tcaatattacttgaagaaaatgcaatg |
406 |
Q |
| |
|
|| |||| ||||||||||||||||| |
|
|
| T |
75493 |
ccagtattgtttgaagaaaatgcaatg |
75467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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