View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9651_high_9 (Length: 274)
Name: NF9651_high_9
Description: NF9651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9651_high_9 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 19 - 265
Target Start/End: Complemental strand, 6489299 - 6489046
Alignment:
| Q |
19 |
cgttcaactctacataggcggagaatgccttgttttccaaatcctacacgcctcgttcgtcctgaaatcacttgttgcgtttctgggcaacgaaaat--- |
115 |
Q |
| |
|
||||||||||||||||| || ||||||||||||||||||||||||||| ||||||||||||| |||||| ||||||||||||||||||||||||||| |
|
|
| T |
6489299 |
cgttcaactctacatagccgaagaatgccttgttttccaaatcctacatgcctcgttcgtcccgaaatcgcttgttgcgtttctgggcaacgaaaataac |
6489200 |
T |
|
| Q |
116 |
----ttgttggtgttgagatcaaagaggatgtggacaagcttcttagagacttttctttgcctgttgtgaactttgtagatcttcgcgacctcgccactg |
211 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| ||||||||||| |
|
|
| T |
6489199 |
aagtttgttggtgttgggatcaaagaggatgtggacaagcttcttagagacttttcttttcctgttgtgaactttgtagatcgtcgcggcctcgccactg |
6489100 |
T |
|
| Q |
212 |
agaagttgggagaaaaagcgatgaaatctgctgggcttaaaacattgcctttgc |
265 |
Q |
| |
|
||||||||||||||||||||||||||| || |||||||||||||||| |||||| |
|
|
| T |
6489099 |
agaagttgggagaaaaagcgatgaaatatgttgggcttaaaacattggctttgc |
6489046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 165; Significance: 3e-88; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 21 - 264
Target Start/End: Original strand, 51946993 - 51947243
Alignment:
| Q |
21 |
ttcaactctacataggcggagaatgccttgttttccaaatcctacacgcctcgttcgtcctgaaatcacttgttgcgtttctgggcaacgaaaat----- |
115 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| |
|
|
| T |
51946993 |
ttcaactatacataggcggagaatgccttgttttccaaatcctacacgcctcgttcgtcccgaaatcgcttgttgcgtttctgggcaacgaaaataacaa |
51947092 |
T |
|
| Q |
116 |
--ttgttggtgttgagatcaaagaggatgtggacaagcttcttagagacttttctttgcctgttgtgaactttgtagatcttcgcgacctcgccactgag |
213 |
Q |
| |
|
|||||||||||| ||||| |||||| |||||||||||||||||||||||||||||| ||||||||| ||||| |||||||| |||||||| ||||| |
|
|
| T |
51947093 |
gtttgttggtgttgggatcagagaggacatggacaagcttcttagagacttttctttgcttgttgtgaattttgtggatcttcgttacctcgccgctgag |
51947192 |
T |
|
| Q |
214 |
aagttgggagaaaaagcgatgaaatctgctgggcttaaaacattgcctttg |
264 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
51947193 |
aagttgggagagaaagcgatgaaatctgctgggcttaaaacattggctttg |
51947243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 114 - 203
Target Start/End: Original strand, 24183424 - 24183513
Alignment:
| Q |
114 |
atttgttggtgttgagatcaaagaggatgtggacaagcttcttagagacttttctttgcctgttgtgaactttgtagatcttcgcgacct |
203 |
Q |
| |
|
|||||||||||||| || |||||||||||| |||||||||||||||| |||||| ||||| |||||||| || |||||| |||| |
|
|
| T |
24183424 |
atttgttggtgttggtgtcgaagaggatgtgggtaagcttcttagagactactctttggttgttgctaactttgttgaacttcgcaacct |
24183513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University