View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9651_low_11 (Length: 432)

Name: NF9651_low_11
Description: NF9651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9651_low_11
NF9651_low_11
[»] chr6 (7 HSPs)
chr6 (15-414)||(34231561-34231954)
chr6 (177-216)||(14620952-14620991)
chr6 (167-212)||(8304386-8304431)
chr6 (182-218)||(8304745-8304781)
chr6 (17-61)||(13479792-13479836)
chr6 (157-213)||(19757943-19757999)
chr6 (180-216)||(26184708-26184744)
[»] chr5 (18 HSPs)
chr5 (17-216)||(34943768-34943972)
chr5 (24-124)||(6267938-6268038)
chr5 (15-70)||(18538273-18538328)
chr5 (15-105)||(21979611-21979701)
chr5 (141-218)||(34944220-34944298)
chr5 (17-123)||(43177926-43178032)
chr5 (15-124)||(20285035-20285144)
chr5 (167-218)||(17046918-17046969)
chr5 (170-217)||(6628356-6628403)
chr5 (15-70)||(33993360-33993415)
chr5 (167-216)||(18848102-18848151)
chr5 (167-216)||(35926297-35926346)
chr5 (34-70)||(1035263-1035299)
chr5 (321-361)||(5413726-5413766)
chr5 (177-217)||(13708031-13708071)
chr5 (34-70)||(27867803-27867839)
chr5 (34-70)||(28387348-28387384)
chr5 (34-70)||(38860160-38860196)
[»] chr2 (15 HSPs)
chr2 (160-217)||(3206746-3206803)
chr2 (167-218)||(7736719-7736770)
chr2 (15-70)||(45475520-45475575)
chr2 (167-216)||(20066819-20066868)
chr2 (34-70)||(3803527-3803563)
chr2 (15-70)||(34921697-34921752)
chr2 (159-217)||(16327349-16327407)
chr2 (327-378)||(45554688-45554741)
chr2 (34-70)||(435422-435458)
chr2 (34-70)||(7263096-7263132)
chr2 (34-70)||(20951030-20951066)
chr2 (141-217)||(22443567-22443643)
chr2 (34-70)||(39794042-39794078)
chr2 (34-70)||(41008885-41008921)
chr2 (34-70)||(41183181-41183217)
[»] chr4 (14 HSPs)
chr4 (15-70)||(18581270-18581325)
chr4 (159-202)||(39666565-39666608)
chr4 (167-217)||(30043544-30043594)
chr4 (167-216)||(11190994-11191043)
chr4 (325-378)||(8109085-8109140)
chr4 (141-213)||(26791586-26791658)
chr4 (34-70)||(44049178-44049214)
chr4 (169-216)||(17139560-17139607)
chr4 (170-216)||(8362091-8362137)
chr4 (141-218)||(72568-72645)
chr4 (34-71)||(19073613-19073650)
chr4 (34-70)||(9890073-9890109)
chr4 (34-70)||(15999757-15999793)
chr4 (325-378)||(50164524-50164579)
[»] chr1 (13 HSPs)
chr1 (15-70)||(7981077-7981132)
chr1 (141-218)||(16247762-16247839)
chr1 (140-216)||(50513903-50513979)
chr1 (15-70)||(4516085-4516140)
chr1 (15-70)||(46973283-46973338)
chr1 (167-213)||(10974811-10974857)
chr1 (141-195)||(11828261-11828315)
chr1 (176-218)||(51320691-51320733)
chr1 (167-216)||(16269127-16269176)
chr1 (34-70)||(5077994-5078030)
chr1 (34-70)||(9711608-9711644)
chr1 (34-70)||(23913910-23913946)
chr1 (34-70)||(44621075-44621111)
[»] chr7 (11 HSPs)
chr7 (160-213)||(31873338-31873391)
chr7 (325-378)||(11824200-11824253)
chr7 (160-213)||(35200844-35200897)
chr7 (327-378)||(31759892-31759943)
chr7 (167-217)||(3379294-3379344)
chr7 (323-378)||(25686829-25686886)
chr7 (167-216)||(17747072-17747121)
chr7 (177-217)||(121855-121895)
chr7 (34-70)||(29593312-29593348)
chr7 (325-378)||(46517420-46517475)
chr7 (34-70)||(47741817-47741853)
[»] scaffold0143 (1 HSPs)
scaffold0143 (141-216)||(3903-3978)
[»] chr8 (11 HSPs)
chr8 (15-70)||(18205866-18205921)
chr8 (141-216)||(33482698-33482773)
chr8 (34-70)||(2146914-2146950)
chr8 (16-120)||(30970199-30970302)
chr8 (34-70)||(45454460-45454496)
chr8 (184-216)||(4866369-4866401)
chr8 (177-213)||(5304244-5304280)
chr8 (325-378)||(16983523-16983578)
chr8 (34-70)||(31957887-31957923)
chr8 (34-70)||(35389588-35389624)
chr8 (34-70)||(35966707-35966743)
[»] chr3 (9 HSPs)
chr3 (167-217)||(36346303-36346353)
chr3 (34-90)||(2745189-2745245)
chr3 (34-70)||(23443090-23443126)
chr3 (327-378)||(52123954-52124007)
chr3 (157-218)||(36346490-36346551)
chr3 (15-95)||(46993168-46993249)
chr3 (34-70)||(14398614-14398650)
chr3 (177-217)||(43568859-43568899)
chr3 (34-70)||(48250827-48250863)
[»] scaffold0361 (1 HSPs)
scaffold0361 (25-70)||(4349-4394)
[»] scaffold0794 (1 HSPs)
scaffold0794 (34-70)||(5351-5387)
[»] scaffold0494 (1 HSPs)
scaffold0494 (34-70)||(936-972)
[»] scaffold0116 (1 HSPs)
scaffold0116 (34-70)||(11354-11390)


Alignment Details
Target: chr6 (Bit Score: 277; Significance: 1e-155; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 15 - 414
Target Start/End: Original strand, 34231561 - 34231954
Alignment:
Q  15 gttgatgatgaaataattagtagggggagcaggtggttgtttcatctaatgaaacagcgccacgacacttaactgctgaggaattcaaaaaaccagcggc 114  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||    
T  34231561 gttgatgatgaaataatgagtagggggagcaggtggttgtttcatctaatgaaacagcgccacggcacttaactgctgagggattcaaaaaaccagcggc 34231660  T
Q  115 agttaactgctgatgaaattcgaaaccagttaactaccgaaaagtattttgatcttttatatgtgtttttcagccttataatatgtgtgaacaacaattt 214  Q
    || ||||||| ||| |||||||||||||||||||||||||  |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||    
T  34231661 agctaactgccgataaaattcgaaaccagttaactaccgaggagtattttgatcttt--tatgtgtttttcagccttataatatgtgtgaacaacaattt 34231758  T
Q  215 tcaaccactcttaaaccttgtactnnnnnnnnnnnntgtgagttcatatcttatataagttcttatattatcttcattgaataattcacatgtatacatt 314  Q
    ||||||||||||||||||||||||            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34231759 tcaaccactcttaaaccttgtactaaaaagaaaaaatgtgagttcatatcttatataagttcttatattatcttcattgaataattcacatgtatacatt 34231858  T
Q  315 gtttcatcaaagtaatgatagcaacactctcttttga--actctctctaatgctcattttcttattaagggaaatgttaacgagtgtcacggggcactct 412  Q
    ||||||||      |||||||||||||| ||||||||  ||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||    
T  34231859 gtttcatc------atgatagcaacactatcttttgaacactctctctaatgctcattttcttattaagggaaatgttaacgagagccacggggcactct 34231952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 177 - 216
Target Start/End: Original strand, 14620952 - 14620991
Alignment:
Q  177 gtgtttttcagccttataatatgtgtgaacaacaattttc 216  Q
    |||||||||||||||||| ||||||||||||||| |||||    
T  14620952 gtgtttttcagccttatactatgtgtgaacaacatttttc 14620991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 167 - 212
Target Start/End: Complemental strand, 8304431 - 8304386
Alignment:
Q  167 tcttttatatgtgtttttcagccttataatatgtgtgaacaacaat 212  Q
    |||||||||||||| || ||||||||| |||||||| |||||||||    
T  8304431 tcttttatatgtgtgttacagccttatgatatgtgtaaacaacaat 8304386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 182 - 218
Target Start/End: Original strand, 8304745 - 8304781
Alignment:
Q  182 tttcagccttataatatgtgtgaacaacaattttcaa 218  Q
    |||||||||||| ||||||||||||||||| ||||||    
T  8304745 tttcagccttatgatatgtgtgaacaacaaatttcaa 8304781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 17 - 61
Target Start/End: Complemental strand, 13479836 - 13479792
Alignment:
Q  17 tgatgatgaaataattagtagggggagcaggtggttgtttcatct 61  Q
    ||||||||||||| |  ||||||||||||||||| ||||||||||    
T  13479836 tgatgatgaaatagtgtgtagggggagcaggtggctgtttcatct 13479792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 157 - 213
Target Start/End: Original strand, 19757943 - 19757999
Alignment:
Q  157 agtattttgatcttttatatgtgtttttcagccttataatatgtgtgaacaacaatt 213  Q
    ||||||||  |||||||||||| |||||||||| ||| |||||||| |||| |||||    
T  19757943 agtattttcgtcttttatatgtatttttcagccctatcatatgtgtcaacagcaatt 19757999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 180 - 216
Target Start/End: Original strand, 26184708 - 26184744
Alignment:
Q  180 tttttcagccttataatatgtgtgaacaacaattttc 216  Q
    |||||||||| ||||| ||||||||||||||||||||    
T  26184708 tttttcagccctataacatgtgtgaacaacaattttc 26184744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 71; Significance: 5e-32; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 17 - 216
Target Start/End: Complemental strand, 34943972 - 34943768
Alignment:
Q  17 tgatgatgaaataattagtagggggagcaggtggttgtttcatctaatgaaacagcgccacgacacttaactgctgaggaattcaaaaaaccagcggcag 116  Q
    ||||||||||| | | ||||||||||| |||||| | |||||||||||||||||||||| ||||||||||||   ||||||||||||||||| |||||||    
T  34943972 tgatgatgaaacagtgagtagggggagtaggtggctatttcatctaatgaaacagcgcctcgacacttaactatcgaggaattcaaaaaaccggcggcag 34943873  T
Q  117 ttaactgctgatgaaattcgaaac------cagttaactaccgaaaagtattttgatcttttatatgtgtttttcagccttataatatgtgtgaacaaca 210  Q
    |||||||| ||||||    |||||      ||| | ||| | ||| ||||||| | |||||||||||||| |||||||||| | || |||||||||||||    
T  34943872 ttaactgcagatgaatagtgaaactgacggcagct-actgctgaagagtatttcggtcttttatatgtgtgtttcagccttcttatgtgtgtgaacaaca 34943774  T
Q  211 attttc 216  Q
    ||||||    
T  34943773 attttc 34943768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 24 - 124
Target Start/End: Original strand, 6267938 - 6268038
Alignment:
Q  24 gaaataattagtagggggagcaggtggttgtttcatctaatgaaacagcgccacgacacttaactgctgaggaattcaaaaaaccagcggcagttaactg 123  Q
    |||||| | ||||||||||||| ||||||||||||||||| ||||||||||| |||||||||| ||| ||||||||||||||| | || |||||||||||    
T  6267938 gaaatagtgagtagggggagcatgtggttgtttcatctaaagaaacagcgcctcgacacttaattgccgaggaattcaaaaaatcggctgcagttaactg 6268037  T
Q  124 c 124  Q
    |    
T  6268038 c 6268038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 15 - 70
Target Start/End: Original strand, 18538273 - 18538328
Alignment:
Q  15 gttgatgatgaaataattagtagggggagcaggtggttgtttcatctaatgaaaca 70  Q
    ||||||||||||||| |  ||||||||||||||||| |||||||||||||||||||    
T  18538273 gttgatgatgaaatagtgtgtagggggagcaggtggctgtttcatctaatgaaaca 18538328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 15 - 105
Target Start/End: Complemental strand, 21979701 - 21979611
Alignment:
Q  15 gttgatgatgaaataattagtagggggagcaggtggttgtttcatctaatgaaacagcgccacgacacttaactgctgaggaattcaaaaa 105  Q
    |||||||| |||||| |  |||||||||||| |||| |||||||||| ||||||||||||| || || ||||||| |||| |||| |||||    
T  21979701 gttgatgaggaaatagtgtgtagggggagcatgtggctgtttcatctgatgaaacagcgcctcggcagttaactgttgagtaattgaaaaa 21979611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 141 - 218
Target Start/End: Original strand, 34944220 - 34944298
Alignment:
Q  141 cagttaactaccgaaaag-tattttgatcttttatatgtgtttttcagccttataatatgtgtgaacaacaattttcaa 218  Q
    |||||||||||||||  | ||||||  |||||||||||||| |||||||||||| | |||||| |||||||||||||||    
T  34944220 cagttaactaccgaagggatattttcgtcttttatatgtgtgtttcagccttatcaaatgtgttaacaacaattttcaa 34944298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 17 - 123
Target Start/End: Complemental strand, 43178032 - 43177926
Alignment:
Q  17 tgatgatgaaataattagtagggggagcaggtggttgtttcatctaatgaaacagcgccacgacacttaactgctgaggaattcaaaaaaccagcggcag 116  Q
    ||||||||||||| | | ||||||||||||| || |||||||||| |||||| |||||| | | | |||||||| ||| ||||||||||  | ||| |||    
T  43178032 tgatgatgaaatagtgactagggggagcaggcggctgtttcatctgatgaaagagcgcctcaataattaactgccgagaaattcaaaaattcggcgacag 43177933  T
Q  117 ttaactg 123  Q
    |||||||    
T  43177932 ttaactg 43177926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 15 - 124
Target Start/End: Complemental strand, 20285144 - 20285035
Alignment:
Q  15 gttgatgatgaaataattagtagggggagcaggtggttgtttcatctaatgaaacagcgccacgacacttaactgctgaggaattcaaaaaaccagcggc 114  Q
    ||||||||||||||| | |||||| ||||||  ||| | |||||||| ||| || ||  |  || ||||||||||| ||||||||||||||| | |||||    
T  20285144 gttgatgatgaaatagtgagtaggaggagcaactggctatttcatctgatggaatagtccatcggcacttaactgccgaggaattcaaaaaatcggcggc 20285045  T
Q  115 agttaactgc 124  Q
    ||||||||||    
T  20285044 agttaactgc 20285035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 167 - 218
Target Start/End: Complemental strand, 17046969 - 17046918
Alignment:
Q  167 tcttttatatgtgtttttcagccttataatatgtgtgaacaacaattttcaa 218  Q
    ||||||||| |||||||||||| || | ||||||||||||||||||||||||    
T  17046969 tcttttataggtgtttttcagctttttcatatgtgtgaacaacaattttcaa 17046918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 170 - 217
Target Start/End: Original strand, 6628356 - 6628403
Alignment:
Q  170 tttatatgtgtttttcagccttataatatgtgtgaacaacaattttca 217  Q
    ||||||||||| ||||||||||   |||||||||||||||||||||||    
T  6628356 tttatatgtgtgtttcagcctttgcatatgtgtgaacaacaattttca 6628403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 15 - 70
Target Start/End: Complemental strand, 33993415 - 33993360
Alignment:
Q  15 gttgatgatgaaataattagtagggggagcaggtggttgtttcatctaatgaaaca 70  Q
    ||||||||||||||| |  ||||||||||||||||| ||||||| || ||||||||    
T  33993415 gttgatgatgaaatagtgtgtagggggagcaggtggctgtttcaactgatgaaaca 33993360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 167 - 216
Target Start/End: Original strand, 18848102 - 18848151
Alignment:
Q  167 tcttttatatgtgtttttcagccttataatatgtgtgaacaacaattttc 216  Q
    ||||||| ||||||||||||||| ||| |||||||| ||||| |||||||    
T  18848102 tcttttacatgtgtttttcagccctatcatatgtgtcaacaataattttc 18848151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 167 - 216
Target Start/End: Complemental strand, 35926346 - 35926297
Alignment:
Q  167 tcttttatatgtgtttttcagccttataatatgtgtgaacaacaattttc 216  Q
    ||||||| || |||||||||||||||| | |||||||||||||| |||||    
T  35926346 tcttttacatatgtttttcagccttatcaaatgtgtgaacaacagttttc 35926297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 34 - 70
Target Start/End: Complemental strand, 1035299 - 1035263
Alignment:
Q  34 gtagggggagcaggtggttgtttcatctaatgaaaca 70  Q
    ||||||||||||||||| |||||||||| ||||||||    
T  1035299 gtagggggagcaggtggctgtttcatctgatgaaaca 1035263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 321 - 361
Target Start/End: Original strand, 5413726 - 5413766
Alignment:
Q  321 tcaaagtaatgatagcaacactctcttttgaactctctcta 361  Q
    |||||||||||  |||||||||||||||||||| |||||||    
T  5413726 tcaaagtaatgcaagcaacactctcttttgaacactctcta 5413766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 177 - 217
Target Start/End: Original strand, 13708031 - 13708071
Alignment:
Q  177 gtgtttttcagccttataatatgtgtgaacaacaattttca 217  Q
    |||||| |||||| ||||| |||||||||||||||||||||    
T  13708031 gtgtttctcagccctataacatgtgtgaacaacaattttca 13708071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 34 - 70
Target Start/End: Original strand, 27867803 - 27867839
Alignment:
Q  34 gtagggggagcaggtggttgtttcatctaatgaaaca 70  Q
    |||||||||||||||||||||||||||  ||||||||    
T  27867803 gtagggggagcaggtggttgtttcatcggatgaaaca 27867839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 34 - 70
Target Start/End: Complemental strand, 28387384 - 28387348
Alignment:
Q  34 gtagggggagcaggtggttgtttcatctaatgaaaca 70  Q
    ||||||||||||||||| |||||||||| ||||||||    
T  28387384 gtagggggagcaggtggctgtttcatctgatgaaaca 28387348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 34 - 70
Target Start/End: Original strand, 38860160 - 38860196
Alignment:
Q  34 gtagggggagcaggtggttgtttcatctaatgaaaca 70  Q
    ||||||||||||||||| |||||||||| ||||||||    
T  38860160 gtagggggagcaggtggctgtttcatctgatgaaaca 38860196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 160 - 217
Target Start/End: Complemental strand, 3206803 - 3206746
Alignment:
Q  160 attttgatcttttatatgtgtttttcagccttataatatgtgtgaacaacaattttca 217  Q
    ||||| ||||||||||||||| |||||||||||| ||||||||||||| |||||||||    
T  3206803 attttaatcttttatatgtgtgtttcagccttatgatatgtgtgaacatcaattttca 3206746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 167 - 218
Target Start/End: Complemental strand, 7736770 - 7736719
Alignment:
Q  167 tcttttatatgtgtttttcagccttataatatgtgtgaacaacaattttcaa 218  Q
    ||||||| ||||||||||||||| ||| |||||||| |||||||||||||||    
T  7736770 tcttttacatgtgtttttcagccctatcatatgtgtaaacaacaattttcaa 7736719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 15 - 70
Target Start/End: Complemental strand, 45475575 - 45475520
Alignment:
Q  15 gttgatgatgaaataattagtagggggagcaggtggttgtttcatctaatgaaaca 70  Q
    ||||||||||||||| |  ||||||||||||||||| |||||||||| ||||||||    
T  45475575 gttgatgatgaaatagtatgtagggggagcaggtggctgtttcatctgatgaaaca 45475520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 167 - 216
Target Start/End: Complemental strand, 20066868 - 20066819
Alignment:
Q  167 tcttttatatgtgtttttcagccttataatatgtgtgaacaacaattttc 216  Q
    ||||| |||||||| |||||||||| | ||||||||||||||||||||||    
T  20066868 tctttgatatgtgtgtttcagccttcttatatgtgtgaacaacaattttc 20066819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 34 - 70
Target Start/End: Original strand, 3803527 - 3803563
Alignment:
Q  34 gtagggggagcaggtggttgtttcatctaatgaaaca 70  Q
    ||||||||||||||||| |||||||||||||||||||    
T  3803527 gtagggggagcaggtggctgtttcatctaatgaaaca 3803563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 15 - 70
Target Start/End: Original strand, 34921697 - 34921752
Alignment:
Q  15 gttgatgatgaaataattagtagggggagcaggtggttgtttcatctaatgaaaca 70  Q
    ||||||||||||||| |  |||||||||||| |||| | |||||||||||||||||    
T  34921697 gttgatgatgaaatagtatgtagggggagcatgtggctatttcatctaatgaaaca 34921752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 159 - 217
Target Start/End: Complemental strand, 16327407 - 16327349
Alignment:
Q  159 tattttgatcttttatatgtgtttttcagccttataatatgtgtgaacaacaattttca 217  Q
    |||||| |||||||| |||||||| ||||||||   |||||||| ||||||||||||||    
T  16327407 tatttttatcttttacatgtgtttatcagcctttgcatatgtgtcaacaacaattttca 16327349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 327 - 378
Target Start/End: Complemental strand, 45554741 - 45554688
Alignment:
Q  327 taatgatagcaacactctcttttgaac--tctctctaatgctcattttcttatt 378  Q
    |||||||| ||||||||||||||||||  |||||||||| |||| |||||||||    
T  45554741 taatgataacaacactctcttttgaacattctctctaatactcactttcttatt 45554688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 34 - 70
Target Start/End: Complemental strand, 435458 - 435422
Alignment:
Q  34 gtagggggagcaggtggttgtttcatctaatgaaaca 70  Q
    ||||||||||||||||| |||||||||| ||||||||    
T  435458 gtagggggagcaggtggctgtttcatctgatgaaaca 435422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 34 - 70
Target Start/End: Complemental strand, 7263132 - 7263096
Alignment:
Q  34 gtagggggagcaggtggttgtttcatctaatgaaaca 70  Q
    ||||||||||||||||| |||||||||| ||||||||    
T  7263132 gtagggggagcaggtggctgtttcatctgatgaaaca 7263096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 34 - 70
Target Start/End: Original strand, 20951030 - 20951066
Alignment:
Q  34 gtagggggagcaggtggttgtttcatctaatgaaaca 70  Q
    ||||||||||||||||| |||||||||| ||||||||    
T  20951030 gtagggggagcaggtggctgtttcatctgatgaaaca 20951066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 141 - 217
Target Start/End: Original strand, 22443567 - 22443643
Alignment:
Q  141 cagttaactaccgaaaagtattttgatcttttatatgtgtttttcagccttataatatgtgtgaacaacaattttca 217  Q
    ||||||||| |||||| |||||  | ||||||| ||||||||||||||||| | |||| |||  ||| |||||||||    
T  22443567 cagttaactgccgaaaggtattacggtcttttacatgtgtttttcagccttctgatatatgtatacatcaattttca 22443643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 34 - 70
Target Start/End: Complemental strand, 39794078 - 39794042
Alignment:
Q  34 gtagggggagcaggtggttgtttcatctaatgaaaca 70  Q
    ||||||||||||||||| |||||||||| ||||||||    
T  39794078 gtagggggagcaggtggctgtttcatctgatgaaaca 39794042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 34 - 70
Target Start/End: Original strand, 41008885 - 41008921
Alignment:
Q  34 gtagggggagcaggtggttgtttcatctaatgaaaca 70  Q
    |||||||||||| |||| |||||||||||||||||||    
T  41008885 gtagggggagcatgtggctgtttcatctaatgaaaca 41008921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 34 - 70
Target Start/End: Original strand, 41183181 - 41183217
Alignment:
Q  34 gtagggggagcaggtggttgtttcatctaatgaaaca 70  Q
    ||||||||||||||||| |||||||||| ||||||||    
T  41183181 gtagggggagcaggtggctgtttcatctgatgaaaca 41183217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 15 - 70
Target Start/End: Original strand, 18581270 - 18581325
Alignment:
Q  15 gttgatgatgaaataattagtagggggagcaggtggttgtttcatctaatgaaaca 70  Q
    ||||||||||||||| |  |||||||||||||||||||||||||||| ||||||||    
T  18581270 gttgatgatgaaatagtgtgtagggggagcaggtggttgtttcatctgatgaaaca 18581325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 159 - 202
Target Start/End: Original strand, 39666565 - 39666608
Alignment:
Q  159 tattttgatcttttatatgtgtttttcagccttataatatgtgt 202  Q
    |||||| ||| |||||||||||||||||||||||||||||||||    
T  39666565 tattttcatcctttatatgtgtttttcagccttataatatgtgt 39666608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 167 - 217
Target Start/End: Original strand, 30043544 - 30043594
Alignment:
Q  167 tcttttatatgtgtttttcagccttataatatgtgtgaacaacaattttca 217  Q
    |||||||||||||| ||||||| ||||||  ||||||||||||||||||||    
T  30043544 tcttttatatgtgtgtttcagcgttataacttgtgtgaacaacaattttca 30043594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 167 - 216
Target Start/End: Complemental strand, 11191043 - 11190994
Alignment:
Q  167 tcttttatatgtgtttttcagccttataatatgtgtgaacaacaattttc 216  Q
    ||||||||| ||||||||||||||||||| ||||||  ||||||||||||    
T  11191043 tcttttatacgtgtttttcagccttataacatgtgtatacaacaattttc 11190994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 325 - 378
Target Start/End: Complemental strand, 8109140 - 8109085
Alignment:
Q  325 agtaatgatagcaacactctcttttga--actctctctaatgctcattttcttatt 378  Q
    ||||||| |||||||||||||||||||  |||||||||||| |||| |||||||||    
T  8109140 agtaatgctagcaacactctcttttgaacactctctctaatactcactttcttatt 8109085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 141 - 213
Target Start/End: Complemental strand, 26791658 - 26791586
Alignment:
Q  141 cagttaactaccgaaaagtattttgatcttttatatgtgtttttcagccttataatatgtgtgaacaacaatt 213  Q
    |||||||||||||||  |||||||  ||||||| |||||||| |||||||| | |||||||| |||| |||||    
T  26791658 cagttaactaccgaagggtattttcgtcttttacatgtgtttctcagccttctcatatgtgtaaacagcaatt 26791586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 34 - 70
Target Start/End: Complemental strand, 44049214 - 44049178
Alignment:
Q  34 gtagggggagcaggtggttgtttcatctaatgaaaca 70  Q
    |||||||||||||||||||||||||||| ||||||||    
T  44049214 gtagggggagcaggtggttgtttcatctgatgaaaca 44049178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 169 - 216
Target Start/End: Complemental strand, 17139607 - 17139560
Alignment:
Q  169 ttttatatgtgtttttcagccttataatatgtgtgaacaacaattttc 216  Q
    ||||| |||||||| ||| |||||| ||||||||||||||||||||||    
T  17139607 ttttacatgtgtttctcaaccttatgatatgtgtgaacaacaattttc 17139560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 170 - 216
Target Start/End: Original strand, 8362091 - 8362137
Alignment:
Q  170 tttatatgtgtttttcagccttataatatgtgtgaacaacaattttc 216  Q
    |||||| |||| |||||||||||||| | ||||||||||||||||||    
T  8362091 tttataggtgtgtttcagccttataacaagtgtgaacaacaattttc 8362137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 141 - 218
Target Start/End: Original strand, 72568 - 72645
Alignment:
Q  141 cagttaactaccgaaaagtattttgatcttttatatgtgtttttcagccttataatatgtgtgaacaacaattttcaa 218  Q
    |||||||||||||||  |||||||| | |||||   |||||| ||||||| | || |||||| |||||||||||||||    
T  72568 cagttaactaccgaatggtattttggtattttactcgtgtttctcagcctaaaaagatgtgtcaacaacaattttcaa 72645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 34 - 71
Target Start/End: Original strand, 19073613 - 19073650
Alignment:
Q  34 gtagggggagcaggtggttgtttcatctaatgaaacag 71  Q
    ||||||||||||||||| |||||||||| |||||||||    
T  19073613 gtagggggagcaggtggctgtttcatctgatgaaacag 19073650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 34 - 70
Target Start/End: Complemental strand, 9890109 - 9890073
Alignment:
Q  34 gtagggggagcaggtggttgtttcatctaatgaaaca 70  Q
    ||||||||||||||||| |||||||||| ||||||||    
T  9890109 gtagggggagcaggtggctgtttcatctgatgaaaca 9890073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 34 - 70
Target Start/End: Original strand, 15999757 - 15999793
Alignment:
Q  34 gtagggggagcaggtggttgtttcatctaatgaaaca 70  Q
    ||||||||||||||||| |||||||||| ||||||||    
T  15999757 gtagggggagcaggtggctgtttcatctgatgaaaca 15999793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 325 - 378
Target Start/End: Complemental strand, 50164579 - 50164524
Alignment:
Q  325 agtaatgatagcaacactctcttttgaac--tctctctaatgctcattttcttatt 378  Q
    ||||||| ||| |||||| ||||||||||  ||||||||||||||| |||||||||    
T  50164579 agtaatgctagtaacactatcttttgaacactctctctaatgctcactttcttatt 50164524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 15 - 70
Target Start/End: Original strand, 7981077 - 7981132
Alignment:
Q  15 gttgatgatgaaataattagtagggggagcaggtggttgtttcatctaatgaaaca 70  Q
    ||||||||||||||| |  |||||||||||||||||||||||||||| ||||||||    
T  7981077 gttgatgatgaaatagtgtgtagggggagcaggtggttgtttcatcttatgaaaca 7981132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 141 - 218
Target Start/End: Original strand, 16247762 - 16247839
Alignment:
Q  141 cagttaactaccgaaaagtattttgatcttttatatgtgtttttcagccttataatatgtgtgaacaacaattttcaa 218  Q
    ||||||||||||||  ||||||  | ||||||| |||||| |||||||||| | || |||||||||||||||||||||    
T  16247762 cagttaactaccgatgagtattgcggtcttttacatgtgtgtttcagcctttttatttgtgtgaacaacaattttcaa 16247839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 140 - 216
Target Start/End: Complemental strand, 50513979 - 50513903
Alignment:
Q  140 ccagttaactaccgaaaagtattttgatcttttatatgtgtttttcagccttataatatgtgtgaacaacaattttc 216  Q
    ||||||||||||||||  |||||||  |||||||||||||||| ||||||  || ||||||||  ||||||||||||    
T  50513979 ccagttaactaccgaatggtattttcgtcttttatatgtgtttgtcagccccattatatgtgtatacaacaattttc 50513903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 15 - 70
Target Start/End: Complemental strand, 4516140 - 4516085
Alignment:
Q  15 gttgatgatgaaataattagtagggggagcaggtggttgtttcatctaatgaaaca 70  Q
    ||||||||||||||| |  ||||||||||||||||| ||||||||||||| |||||    
T  4516140 gttgatgatgaaatagtgtgtagggggagcaggtggctgtttcatctaataaaaca 4516085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 15 - 70
Target Start/End: Complemental strand, 46973338 - 46973283
Alignment:
Q  15 gttgatgatgaaataattagtagggggagcaggtggttgtttcatctaatgaaaca 70  Q
    ||||||||||||||| |  ||||||||||||||||| |||||||||| ||||||||    
T  46973338 gttgatgatgaaatagtgtgtagggggagcaggtggctgtttcatctgatgaaaca 46973283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 167 - 213
Target Start/End: Original strand, 10974811 - 10974857
Alignment:
Q  167 tcttttatatgtgtttttcagccttataatatgtgtgaacaacaatt 213  Q
    ||||||||||||||||||||||| ||| |||||||| ||||||||||    
T  10974811 tcttttatatgtgtttttcagccctatcatatgtgtcaacaacaatt 10974857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 141 - 195
Target Start/End: Original strand, 11828261 - 11828315
Alignment:
Q  141 cagttaactaccgaaaagtattttgatcttttatatgtgtttttcagccttataa 195  Q
    |||||||||| ||||  |||||||  |||||||||||||||||||||||||||||    
T  11828261 cagttaactatcgaagggtatttttgtcttttatatgtgtttttcagccttataa 11828315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 176 - 218
Target Start/End: Complemental strand, 51320733 - 51320691
Alignment:
Q  176 tgtgtttttcagccttataatatgtgtgaacaacaattttcaa 218  Q
    ||||| |||||||||||||| | ||||||||||||||||||||    
T  51320733 tgtgtgtttcagccttataaaaggtgtgaacaacaattttcaa 51320691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 167 - 216
Target Start/End: Complemental strand, 16269176 - 16269127
Alignment:
Q  167 tcttttatatgtgtttttcagccttataatatgtgtgaacaacaattttc 216  Q
    |||||||||||||||||||| |||| |||| |||||  ||||||||||||    
T  16269176 tcttttatatgtgtttttcaaccttctaatttgtgtatacaacaattttc 16269127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 34 - 70
Target Start/End: Complemental strand, 5078030 - 5077994
Alignment:
Q  34 gtagggggagcaggtggttgtttcatctaatgaaaca 70  Q
    ||||||||||||||||| |||||||||| ||||||||    
T  5078030 gtagggggagcaggtggctgtttcatctgatgaaaca 5077994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 34 - 70
Target Start/End: Original strand, 9711608 - 9711644
Alignment:
Q  34 gtagggggagcaggtggttgtttcatctaatgaaaca 70  Q
    ||||||||||||||||| |||||||||| ||||||||    
T  9711608 gtagggggagcaggtggctgtttcatctgatgaaaca 9711644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 34 - 70
Target Start/End: Complemental strand, 23913946 - 23913910
Alignment:
Q  34 gtagggggagcaggtggttgtttcatctaatgaaaca 70  Q
    ||||||||||||||||| |||||||||| ||||||||    
T  23913946 gtagggggagcaggtggctgtttcatctgatgaaaca 23913910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 34 - 70
Target Start/End: Original strand, 44621075 - 44621111
Alignment:
Q  34 gtagggggagcaggtggttgtttcatctaatgaaaca 70  Q
    ||||||||||||||||| |||||||||| ||||||||    
T  44621075 gtagggggagcaggtggctgtttcatctgatgaaaca 44621111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 160 - 213
Target Start/End: Complemental strand, 31873391 - 31873338
Alignment:
Q  160 attttgatcttttatatgtgtttttcagccttataatatgtgtgaacaacaatt 213  Q
    ||||| |||||||| ||||||||||||||||||| |||||||| ||||||||||    
T  31873391 attttcatcttttacatgtgtttttcagccttatcatatgtgtcaacaacaatt 31873338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 325 - 378
Target Start/End: Complemental strand, 11824253 - 11824200
Alignment:
Q  325 agtaatgatagcaacactctcttttgaactctctctaatgctcattttcttatt 378  Q
    ||||||| || |||||||||||||||||| ||||||||| |||| |||||||||    
T  11824253 agtaatgctaacaacactctcttttgaacactctctaatactcactttcttatt 11824200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 160 - 213
Target Start/End: Original strand, 35200844 - 35200897
Alignment:
Q  160 attttgatcttttatatgtgtttttcagccttataatatgtgtgaacaacaatt 213  Q
    ||||| |||||||| ||||||||||||||| ||| |||||||| ||||||||||    
T  35200844 attttcatcttttacatgtgtttttcagccctatcatatgtgtaaacaacaatt 35200897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 327 - 378
Target Start/End: Complemental strand, 31759943 - 31759892
Alignment:
Q  327 taatgatagcaacactctcttttgaactctctctaatgctcattttcttatt 378  Q
    ||||| ||||||||| ||||||| ||| ||||||||| ||||||||||||||    
T  31759943 taatgctagcaacaccctcttttaaacactctctaatactcattttcttatt 31759892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 167 - 217
Target Start/End: Complemental strand, 3379344 - 3379294
Alignment:
Q  167 tcttttatatgtgtttttcagccttataatatgtgtgaacaacaattttca 217  Q
    |||||||||||||| |||||||||| | || ||||||||| ||||||||||    
T  3379344 tcttttatatgtgtgtttcagcctttttatgtgtgtgaactacaattttca 3379294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 323 - 378
Target Start/End: Original strand, 25686829 - 25686886
Alignment:
Q  323 aaagtaatgatagcaacactctcttttgaac--tctctctaatgctcattttcttatt 378  Q
    ||||||||| |||||||||||||||||||||  ||| |||||| |||||| |||||||    
T  25686829 aaagtaatgttagcaacactctcttttgaacattctttctaatactcattatcttatt 25686886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 167 - 216
Target Start/End: Complemental strand, 17747121 - 17747072
Alignment:
Q  167 tcttttatatgtgtttttcagccttataatatgtgtgaacaacaattttc 216  Q
    ||||||| |||||| |||||||||| | || |||||||||||||||||||    
T  17747121 tcttttacatgtgtgtttcagccttcttatgtgtgtgaacaacaattttc 17747072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 177 - 217
Target Start/End: Original strand, 121855 - 121895
Alignment:
Q  177 gtgtttttcagccttataatatgtgtgaacaacaattttca 217  Q
    ||||||||||||| |||| ||||||| ||||||||||||||    
T  121855 gtgtttttcagccctatactatgtgtcaacaacaattttca 121895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 34 - 70
Target Start/End: Original strand, 29593312 - 29593348
Alignment:
Q  34 gtagggggagcaggtggttgtttcatctaatgaaaca 70  Q
    ||||||||||||||||| |||||||||| ||||||||    
T  29593312 gtagggggagcaggtggctgtttcatctgatgaaaca 29593348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 325 - 378
Target Start/End: Complemental strand, 46517475 - 46517420
Alignment:
Q  325 agtaatgatagcaacactctcttttgaac--tctctctaatgctcattttcttatt 378  Q
    ||||||| |||||||||||||||||||||   ||||||||| |||||| |||||||    
T  46517475 agtaatgctagcaacactctcttttgaacagcctctctaatactcattctcttatt 46517420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 34 - 70
Target Start/End: Complemental strand, 47741853 - 47741817
Alignment:
Q  34 gtagggggagcaggtggttgtttcatctaatgaaaca 70  Q
    ||||||||||||||||| |||||||||| ||||||||    
T  47741853 gtagggggagcaggtggctgtttcatctgatgaaaca 47741817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0143 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0143
Description:

Target: scaffold0143; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 141 - 216
Target Start/End: Original strand, 3903 - 3978
Alignment:
Q  141 cagttaactaccgaaaagtattttgatcttttatatgtgtttttcagccttataatatgtgtgaacaacaattttc 216  Q
    |||||||||||||||| |||||||  ||||||| |||||||| ||||||  | |||||||||  ||||||||||||    
T  3903 cagttaactaccgaaaggtattttcgtcttttacatgtgtttctcagccaaacaatatgtgtatacaacaattttc 3978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 15 - 70
Target Start/End: Complemental strand, 18205921 - 18205866
Alignment:
Q  15 gttgatgatgaaataattagtagggggagcaggtggttgtttcatctaatgaaaca 70  Q
    ||||||||||||||| |  ||||||||||||||||| |||||||||| ||||||||    
T  18205921 gttgatgatgaaatagtgtgtagggggagcaggtggctgtttcatctgatgaaaca 18205866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 141 - 216
Target Start/End: Complemental strand, 33482773 - 33482698
Alignment:
Q  141 cagttaactaccgaaaagtattttgatcttttatatgtgtttttcagccttataatatgtgtgaacaacaattttc 216  Q
    |||||||||||||||| |||||||  ||||||| |||||||| ||||||  | |||||||||  ||||||||||||    
T  33482773 cagttaactaccgaaaggtattttcgtcttttacatgtgtttctcagccaaacaatatgtgtatacaacaattttc 33482698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 34 - 70
Target Start/End: Original strand, 2146914 - 2146950
Alignment:
Q  34 gtagggggagcaggtggttgtttcatctaatgaaaca 70  Q
    ||||||||||||||||| |||||||||||||||||||    
T  2146914 gtagggggagcaggtggctgtttcatctaatgaaaca 2146950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 120
Target Start/End: Complemental strand, 30970302 - 30970199
Alignment:
Q  16 ttgatgatgaaataattagtagggggagcaggtggttgtttcatctaatgaaacagcgccacgacacttaactgctgaggaattcaaaaaaccagcggca 115  Q
    |||||||||||||||| |||||||| ||||  ||  | |||||||| ||| |||||  |  |||||||||||||| ||| ||||||||||||| | ||||    
T  30970302 ttgatgatgaaataatcagtagggg-agcatctgtctatttcatctgatggaacagttcatcgacacttaactgccgagaaattcaaaaaaccggtggca 30970204  T
Q  116 gttaa 120  Q
    |||||    
T  30970203 gttaa 30970199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 34 - 70
Target Start/End: Complemental strand, 45454496 - 45454460
Alignment:
Q  34 gtagggggagcaggtggttgtttcatctaatgaaaca 70  Q
    |||||||||||||||||||||||||||| ||||||||    
T  45454496 gtagggggagcaggtggttgtttcatctgatgaaaca 45454460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 184 - 216
Target Start/End: Complemental strand, 4866401 - 4866369
Alignment:
Q  184 tcagccttataatatgtgtgaacaacaattttc 216  Q
    |||||||||| ||||||||||||||||||||||    
T  4866401 tcagccttatgatatgtgtgaacaacaattttc 4866369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 177 - 213
Target Start/End: Original strand, 5304244 - 5304280
Alignment:
Q  177 gtgtttttcagccttataatatgtgtgaacaacaatt 213  Q
    ||||||||||||||||| | |||||||||||||||||    
T  5304244 gtgtttttcagccttatcaaatgtgtgaacaacaatt 5304280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 325 - 378
Target Start/End: Complemental strand, 16983578 - 16983523
Alignment:
Q  325 agtaatgatagcaacactctcttttga--actctctctaatgctcattttcttatt 378  Q
    ||||||| |||||||||||||||||||  |||||||||||| |||| | |||||||    
T  16983578 agtaatgctagcaacactctcttttgaacactctctctaatactcactctcttatt 16983523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 34 - 70
Target Start/End: Complemental strand, 31957923 - 31957887
Alignment:
Q  34 gtagggggagcaggtggttgtttcatctaatgaaaca 70  Q
    ||||||||||||||||| |||||||||| ||||||||    
T  31957923 gtagggggagcaggtggctgtttcatctgatgaaaca 31957887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 34 - 70
Target Start/End: Complemental strand, 35389624 - 35389588
Alignment:
Q  34 gtagggggagcaggtggttgtttcatctaatgaaaca 70  Q
    ||||||||||||| |||||||||||||| ||||||||    
T  35389624 gtagggggagcagatggttgtttcatctgatgaaaca 35389588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 34 - 70
Target Start/End: Original strand, 35966707 - 35966743
Alignment:
Q  34 gtagggggagcaggtggttgtttcatctaatgaaaca 70  Q
    ||||||||||||||||| |||||||||| ||||||||    
T  35966707 gtagggggagcaggtggctgtttcatctgatgaaaca 35966743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 167 - 217
Target Start/End: Complemental strand, 36346353 - 36346303
Alignment:
Q  167 tcttttatatgtgtttttcagccttataatatgtgtgaacaacaattttca 217  Q
    ||||||||||||||||||||||| ||| |||||||| |||| |||||||||    
T  36346353 tcttttatatgtgtttttcagccctattatatgtgtcaacagcaattttca 36346303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 34 - 90
Target Start/End: Original strand, 2745189 - 2745245
Alignment:
Q  34 gtagggggagcaggtggttgtttcatctaatgaaacagcgccacgacacttaactgc 90  Q
    ||||||||||||||||| |||||||||| |||||||||  || ||||| ||||||||    
T  2745189 gtagggggagcaggtggctgtttcatctgatgaaacagaccctcgacagttaactgc 2745245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 34 - 70
Target Start/End: Original strand, 23443090 - 23443126
Alignment:
Q  34 gtagggggagcaggtggttgtttcatctaatgaaaca 70  Q
    |||||||||||||||||||||||||||| ||||||||    
T  23443090 gtagggggagcaggtggttgtttcatctgatgaaaca 23443126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 327 - 378
Target Start/End: Original strand, 52123954 - 52124007
Alignment:
Q  327 taatgatagcaacactctcttttga--actctctctaatgctcattttcttatt 378  Q
    ||||| |||||||||||||||||||  |||||||||||| |||| |||||||||    
T  52123954 taatgctagcaacactctcttttgaacactctctctaatactcactttcttatt 52124007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 157 - 218
Target Start/End: Original strand, 36346490 - 36346551
Alignment:
Q  157 agtattttgatcttttatatgtgtttttcagccttataatatgtgtgaacaacaattttcaa 218  Q
    ||||||||  ||||||| |||||||||||| || |||||||||||| ||||| |||| ||||    
T  36346490 agtattttcgtcttttacatgtgtttttcaaccctataatatgtgtcaacaataattctcaa 36346551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 95
Target Start/End: Original strand, 46993168 - 46993249
Alignment:
Q  15 gttgatgatgaaa-taattagtagggggagcaggtggttgtttcatctaatgaaacagcgccacgacacttaactgctgagg 95  Q
    ||||||||||||| ||||  ||| ||||||||||||| |||||||||| ||||||||   || ||||| |||||||| ||||    
T  46993168 gttgatgatgaaaataatatgtaaggggagcaggtggctgtttcatctgatgaaacatttcctcgacagttaactgccgagg 46993249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 34 - 70
Target Start/End: Complemental strand, 14398650 - 14398614
Alignment:
Q  34 gtagggggagcaggtggttgtttcatctaatgaaaca 70  Q
    ||||||||||||||||| |||||||||| ||||||||    
T  14398650 gtagggggagcaggtggctgtttcatctgatgaaaca 14398614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 177 - 217
Target Start/End: Complemental strand, 43568899 - 43568859
Alignment:
Q  177 gtgtttttcagccttataatatgtgtgaacaacaattttca 217  Q
    |||||| |||||||||||| |||||| ||||||||||||||    
T  43568899 gtgtttctcagccttataaaatgtgtcaacaacaattttca 43568859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 34 - 70
Target Start/End: Original strand, 48250827 - 48250863
Alignment:
Q  34 gtagggggagcaggtggttgtttcatctaatgaaaca 70  Q
    ||||||||||||||||| |||||||||| ||||||||    
T  48250827 gtagggggagcaggtggctgtttcatctgatgaaaca 48250863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0361 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 25 - 70
Target Start/End: Original strand, 4349 - 4394
Alignment:
Q  25 aaataattagtagggggagcaggtggttgtttcatctaatgaaaca 70  Q
    ||||| || |||||||||||||||||||||||||||| ||||||||    
T  4349 aaatagtttgtagggggagcaggtggttgtttcatctgatgaaaca 4394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0794 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0794
Description:

Target: scaffold0794; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 34 - 70
Target Start/End: Complemental strand, 5387 - 5351
Alignment:
Q  34 gtagggggagcaggtggttgtttcatctaatgaaaca 70  Q
    ||||||||||||||||| |||||||||| ||||||||    
T  5387 gtagggggagcaggtggctgtttcatctgatgaaaca 5351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0494 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0494
Description:

Target: scaffold0494; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 34 - 70
Target Start/End: Complemental strand, 972 - 936
Alignment:
Q  34 gtagggggagcaggtggttgtttcatctaatgaaaca 70  Q
    ||||||||||||||||| |||||||||| ||||||||    
T  972 gtagggggagcaggtggctgtttcatctgatgaaaca 936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0116 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0116
Description:

Target: scaffold0116; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 34 - 70
Target Start/End: Complemental strand, 11390 - 11354
Alignment:
Q  34 gtagggggagcaggtggttgtttcatctaatgaaaca 70  Q
    ||||||||||||||||| |||||||||| ||||||||    
T  11390 gtagggggagcaggtggctgtttcatctgatgaaaca 11354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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