View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9651_low_14 (Length: 414)
Name: NF9651_low_14
Description: NF9651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9651_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 189; Significance: 1e-102; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 19 - 223
Target Start/End: Complemental strand, 2926634 - 2926430
Alignment:
| Q |
19 |
cttcaaggatgtctactaggctaaagttattcttgaaataatcaactttttcgtgaaatataatgaaacctcactttgctaaagaaatttggtttataat |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2926634 |
cttcaaggatgtctactaggctaaagttattcttgaaataatcaactttttcgtgaaatataatgaaacctcactttgctaaagaaatttggtttataat |
2926535 |
T |
|
| Q |
119 |
catggcatcagttaaggatagccacaaaatttaatctcaatagaagtttttgaacaaattagtgttgtaacatgaaaatgagcatgatttcttacaaact |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| |||||||||||||||||||| | |
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| T |
2926534 |
catggcatcagttaaggatagccacaaaatttaatctcaatagaagtatttgaacaaattagtgttgtatcatgaaagtgagcatgatttcttacaaaat |
2926435 |
T |
|
| Q |
219 |
attga |
223 |
Q |
| |
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||||| |
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|
| T |
2926434 |
attga |
2926430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 220 - 398
Target Start/End: Complemental strand, 2920764 - 2920585
Alignment:
| Q |
220 |
ttgaaaacatacaacataaatatatttattacaactgaaagttagataagttcagataaaatagatacaatacactataataaaacagatattatacaag |
319 |
Q |
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||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
2920764 |
ttgaaaacatacaacatgaatatatttattacaactgaaatttagataagttcagataaaatagatacaatacactataataaaacaggtattatacaag |
2920665 |
T |
|
| Q |
320 |
ggataatttgacc-ttcagactaacaaacagataaaaaggacatgcagacacactaccaacatgaaattttgtttgtaat |
398 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2920664 |
ggataatttgaccgttcagactaacaaacagataaaaaggacatgcagacacactaccaacatgaaattttgtttgtaat |
2920585 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 261 - 398
Target Start/End: Complemental strand, 2926108 - 2925970
Alignment:
| Q |
261 |
ttagataagttcagataaaatagatacaatacactataataaaacagatattatacaagggataatttgacc-ttcagactaacaaacagataaaaagga |
359 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
2926108 |
ttagataagttcagataaaatagatacaatacactataataaaacaggtattatacaagggataatttgaccgttcagactaacaaacagataaaaagga |
2926009 |
T |
|
| Q |
360 |
catgcagacacactaccaacatgaaattttgtttgtaat |
398 |
Q |
| |
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||||||||||||||||||||| ||||||||||||||||| |
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| T |
2926008 |
catgcagacacactaccaacaagaaattttgtttgtaat |
2925970 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 17 - 221
Target Start/End: Complemental strand, 2921227 - 2921028
Alignment:
| Q |
17 |
ttcttcaaggatgtctactaggctaaagttattcttgaaataatcaactttttcgtgaaatataatgaaacctcactttgctaaagaaatttggtttata |
116 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||| |||||||||||||| |
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| T |
2921227 |
ttcttcaagaatgtctactaggctaaagttattcttgaaataat--actttttcgttaaatataatgaaacctcactttgctaaa-aaatttggtttata |
2921131 |
T |
|
| Q |
117 |
atcatggcatcagttaaggatagccacaaaatttaatctcaatagaagtttttgaacaaattagtgttgtaacatgaaaatgagcatgatttcttacaaa |
216 |
Q |
| |
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||||||| ||| ||||| || | ||| |||| |||| |||||||||||| |||||||||||||| || || ||||||| ||||| |||||||||||||| |
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|
| T |
2921130 |
atcatggtatcggttaacgacaaccaaaaaaattaacctcaatagaagtatttgaacaaattagcgt--tatcatgaaagtgagcttgatttcttacaaa |
2921033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 41 - 146
Target Start/End: Complemental strand, 2921916 - 2921811
Alignment:
| Q |
41 |
aaagttattcttgaaataatcaactttttcgtgaaatataatgaaacctcactttgctaaagaaatttggtttataatcatggcatcagttaaggatagc |
140 |
Q |
| |
|
||||| ||||||| |||| ||||||||||| |||||| |||||||| ||||||||| ||||||| |||| |||||| |||||| |||| ||||||| | | |
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| T |
2921916 |
aaagtgattcttgtaatactcaactttttcatgaaatgtaatgaaatctcactttggtaaagaattttgatttatattcatggtatcatttaaggacaac |
2921817 |
T |
|
| Q |
141 |
cacaaa |
146 |
Q |
| |
|
|||||| |
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|
| T |
2921816 |
cacaaa |
2921811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 55 - 123
Target Start/End: Complemental strand, 2927399 - 2927331
Alignment:
| Q |
55 |
aataatcaactttttcgtgaaatataatgaaacctcactttgctaaagaaatttggtttataatcatgg |
123 |
Q |
| |
|
|||||||||||||||| |||||| |||||||| ||||||||| ||||||| ||||||||||| |||||| |
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|
| T |
2927399 |
aataatcaactttttcatgaaatgtaatgaaatctcactttggtaaagaattttggtttatattcatgg |
2927331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 239 - 294
Target Start/End: Complemental strand, 2926888 - 2926833
Alignment:
| Q |
239 |
atatatttattacaactgaaagttagataagttcagataaaatagatacaatacac |
294 |
Q |
| |
|
|||||| |||||||||||||| ||||||||| || |||||||| ||||||||||| |
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|
| T |
2926888 |
atatatatattacaactgaaatatagataagtacatataaaataaatacaatacac |
2926833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 241 - 294
Target Start/End: Original strand, 31346590 - 31346643
Alignment:
| Q |
241 |
atatttattacaactgaaagttagataagttcagataaaatagatacaatacac |
294 |
Q |
| |
|
|||| |||||||||||||| |||||||||||| ||||||||||||||||||||| |
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|
| T |
31346590 |
atatatattacaactgaaatttagataagttcggataaaatagatacaatacac |
31346643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 359 - 398
Target Start/End: Original strand, 31346685 - 31346724
Alignment:
| Q |
359 |
acatgcagacacactaccaacatgaaattttgtttgtaat |
398 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31346685 |
acatgcagacacactaccaacatgaaattttgtttgtaat |
31346724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 241 - 291
Target Start/End: Original strand, 31357232 - 31357282
Alignment:
| Q |
241 |
atatttattacaactgaaagttagataagttcagataaaatagatacaata |
291 |
Q |
| |
|
|||| |||||||||||||| |||||||||||| |||||||||||||||||| |
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|
| T |
31357232 |
atatatattacaactgaaatttagataagttcggataaaatagatacaata |
31357282 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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