View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9651_low_15 (Length: 414)
Name: NF9651_low_15
Description: NF9651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9651_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 1 - 398
Target Start/End: Original strand, 6454805 - 6455194
Alignment:
| Q |
1 |
taagcaatattatcctagataagcacttttatacgataagtgtttattctgtaagtgtttacttaagttctttattcaaatagaatcaatatatacatga |
100 |
Q |
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| T |
6454805 |
taagcaatattatcctagataagcacttttatacgataagtgtttattctataagcgtttacttaagttctttattcaaatagaatcaatatatacatga |
6454904 |
T |
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| Q |
101 |
ttattttgatatgaaatattatcatttcttcttcattatggtaagaacatgaacatgtccataacaaaatataaggaaaaaacaagattaatgtannnnn |
200 |
Q |
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| T |
6454905 |
ttattttgatatgaaatattatcatttcttcttcattatggaaagaacatgaacatgtccataacaaaatataacgaaaaaacaagattaatgtattttt |
6455004 |
T |
|
| Q |
201 |
nngcttatcttttattacaaggaagtataatataagtatatgattatggatcatgttaattaattgtgtaattaaacttgcaggagcaacaccaaaatct |
300 |
Q |
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| T |
6455005 |
ttgcttatcttttattacaaggaagtataatataag--------tatggatcatgttagttaattgtgtaattaaacttgcaggagcaacaccaaaatct |
6455096 |
T |
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| Q |
301 |
gtgttagagttaatgaatgtgaaggatctaaccctagcacacgtcaagagtcacttacaggtggggtaaactattcaccatagtcttacagtttaatg |
398 |
Q |
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| T |
6455097 |
gtgttagagttaatgaatgtgaaggatctaaccctagcacacgtcaagagtcacttacaggtggggtaaactattcaccatagtcttacagtttaatg |
6455194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 282 - 362
Target Start/End: Complemental strand, 26579752 - 26579672
Alignment:
| Q |
282 |
aggagcaacaccaaaatctgtgttagagttaatgaatgtgaaggatctaaccctagcacacgtcaagagtcacttacaggt |
362 |
Q |
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|||||| || || ||||| || || ||| ||||| ||||||| |||||||| ||||| || ||||||||||| |||||||| |
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| T |
26579752 |
aggagctactcctaaatcagttttggagctaatggatgtgaaagatctaacactagctcatgtcaagagtcatttacaggt |
26579672 |
T |
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