View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9651_low_17 (Length: 364)
Name: NF9651_low_17
Description: NF9651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9651_low_17 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 10 - 364
Target Start/End: Complemental strand, 9658971 - 9658617
Alignment:
| Q |
10 |
gagcagagaatcaatgaaagaaatgctgaaagaagaaatgatcaagcactgcaggctcacgtcgcaatgaagaaaaagggtgagaaatggaaaggcaaga |
109 |
Q |
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| T |
9658971 |
gagcagagaatcaatgaaagaaatgctgaaagaagaaatgatcaagcactgcaggctcacgtcgcaatgaagaaaaagggtgagaaatggaaaggcaaga |
9658872 |
T |
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| Q |
110 |
aacacaaaggaaaaatgtctcggaacaagactgaaggagcagtaaatttcaagaatcaagatcatgctgaatcattatcacaagccaacaagaattacca |
209 |
Q |
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| T |
9658871 |
aacacaaaggaaaaatgtctcggaacaagactgaaggagcagtaaatttcaagaatcaagatcatgctgaatcattatcacaagccaacaagaattacca |
9658772 |
T |
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| Q |
210 |
tttaaagaagaagaactgggataagagtaagatacattgctttaattgcaataagttttgtcattttgctagtgaatgctatcaaaagaagaatgttcaa |
309 |
Q |
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| T |
9658771 |
ttcaaagaagaagaactgggataagagtaagatacattgctttaattgcaataagttttgtcattttgctagcgaattctatcaaaagaagaatgttcaa |
9658672 |
T |
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| Q |
310 |
aagtgatcaaataatgaagcaaatatggctcaagaaaatgattcagactcgtata |
364 |
Q |
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| T |
9658671 |
aagtgatcaaataatgaagcaaatatggctcaagaaaatgattcagactcgtata |
9658617 |
T |
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