View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9651_low_18 (Length: 337)
Name: NF9651_low_18
Description: NF9651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9651_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 300; Significance: 1e-169; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 20 - 327
Target Start/End: Original strand, 5884021 - 5884328
Alignment:
| Q |
20 |
ctcgtctcgtcgttgttgtttcatcgttaacaatagcacaagaatgttttaccaaaaacgacatagttttagcgaaccgacctcatttcttaactggaaa |
119 |
Q |
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| T |
5884021 |
ctcgtctcgtcgttgttgtttcatcgttaacaatagcacaagaatgttttaccaaaaacgacatagttttagcgaaccgacctcatttcttaactggaaa |
5884120 |
T |
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| Q |
120 |
atatattggctacaacaatactacggtagcacaatcaccttatggtgaccattggcgcaatcttcgacgaatattatcaattgaaatactctcatctcat |
219 |
Q |
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| T |
5884121 |
atatattggctacaacaatactacggtagcacaatcaccttatggtgaccattggcgcaatcttcgacgaatattatcaattgaaatactctcatctcat |
5884220 |
T |
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| Q |
220 |
cgtttaaattccttcttggaaataagaagagatgagattacgagactaatacaaaagctagcacaaaaatcatacaatggtttcaccgaagtggaactta |
319 |
Q |
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| T |
5884221 |
cgtttaaattccttcttggaaatacgaagagatgagattatgagactaatacaaaagctagcacaaaaatcatacaatggtttcaccgaagtggaactta |
5884320 |
T |
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| Q |
320 |
gacctatg |
327 |
Q |
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|||||||| |
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| T |
5884321 |
gacctatg |
5884328 |
T |
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