View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9651_low_19 (Length: 330)
Name: NF9651_low_19
Description: NF9651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9651_low_19 |
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Alignment Details
Target: chr6 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 321
Target Start/End: Original strand, 5677679 - 5678003
Alignment:
| Q |
1 |
tgatagccgcagcggtacgcgaaacaacaaagacttctataattgatgtcacacttgatagcaacaaaacgcataagattgcaagtatattgtttttgtg |
100 |
Q |
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| T |
5677679 |
tgatagccgcagcggtacgcgaaactacaaagacttctataattgatgtcacacttgatagcaacagaacgcataagattgcaaatatattgttgttgtg |
5677778 |
T |
|
| Q |
101 |
gtcattgttgttggaacgatgttgtagtgtaacaagtagtatcatttgaaaaactaaaacaagaacacagagtgagagcaacactatagtgtcatgttgt |
200 |
Q |
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| T |
5677779 |
gtcattgttgttggaacgatgttgtagtgtaacaagtagtatcatttgaaaaactaaaacaaaaacacagagtgagagcaacactatagtgtcatgttgt |
5677878 |
T |
|
| Q |
201 |
gcaatgaatttaccggcgaatgatgacatctttagggctacgcagataatcaaaagcatggataattgccc----tgcggacacaagtacttgcagaaag |
296 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
5677879 |
gcaatgaatttaccagcgaatgatgacatctttagggctacgcagataattaaaagcatggataattgccctgcatgcggacacaagtacttgcagaaag |
5677978 |
T |
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| Q |
297 |
ctctcatctacgttgttcatgatga |
321 |
Q |
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|||||||||||||||||||| |||| |
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| T |
5677979 |
ctctcatctacgttgttcatcatga |
5678003 |
T |
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