View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9651_low_20 (Length: 320)
Name: NF9651_low_20
Description: NF9651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9651_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 295; Significance: 1e-166; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 1 - 295
Target Start/End: Complemental strand, 38008472 - 38008178
Alignment:
| Q |
1 |
ttgggcctgagcaaattgtagagaacatgcatgcacgtacagacattttatgcaagcagagggtagagcgggaaatctgaatttgtcaaacagtctcagt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38008472 |
ttgggcctgagcaaattgtagagaacatgcatgcacgtacagacattttatgcaagcagagggtagagcgggaaatctgaatttgtcaaacagtctcagt |
38008373 |
T |
|
| Q |
101 |
ttgtctgagttgagtgcatctgtcacagtcacatgatcttaagatatagattgcaggccacccgcgtgtcatggtcggaacattttctccgacaaagaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38008372 |
ttgtctgagttgagtgcatctgtcacagtcacatgatcttaagatatagattgcaggccacccgcgtgtcatggtcggaacattttctccgacaaagaaa |
38008273 |
T |
|
| Q |
201 |
atgtttttgcagctgccagaattgggttcagagataattgactgtacagtgtacacaagttgtcaccgcaaacaattggtggtaatgaaggggtc |
295 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38008272 |
atgtttttgcagctgccagaattgggttcagagataattgactgtacagtgtacacaagttgtcaccgcaaacaattggtggtaatgaaggggtc |
38008178 |
T |
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