View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9651_low_22 (Length: 284)

Name: NF9651_low_22
Description: NF9651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9651_low_22
NF9651_low_22
[»] chr4 (29 HSPs)
chr4 (20-121)||(7521449-7521550)
chr4 (20-121)||(7127642-7127743)
chr4 (20-121)||(7529514-7529615)
chr4 (20-121)||(7495791-7495892)
chr4 (20-113)||(7717087-7717180)
chr4 (20-121)||(7720917-7721018)
chr4 (20-90)||(7483423-7483493)
chr4 (124-179)||(7521359-7521414)
chr4 (219-269)||(8255057-8255107)
chr4 (219-269)||(8268475-8268525)
chr4 (124-176)||(7127778-7127830)
chr4 (124-176)||(7495704-7495756)
chr4 (124-176)||(7529427-7529479)
chr4 (124-176)||(7721053-7721105)
chr4 (219-268)||(30167566-30167615)
chr4 (219-268)||(30964471-30964520)
chr4 (213-260)||(36962626-36962672)
chr4 (219-265)||(4305755-4305801)
chr4 (219-269)||(25753202-25753252)
chr4 (219-269)||(38929857-38929907)
chr4 (213-258)||(19815236-19815281)
chr4 (219-268)||(53823423-53823472)
chr4 (124-180)||(7717223-7717278)
chr4 (218-269)||(28966896-28966947)
chr4 (224-258)||(19673135-19673169)
chr4 (217-258)||(22811172-22811213)
chr4 (124-176)||(7483305-7483357)
chr4 (219-267)||(35341341-35341389)
chr4 (219-259)||(39041285-39041325)
[»] chr3 (14 HSPs)
chr3 (219-274)||(19176532-19176587)
chr3 (219-269)||(17550987-17551037)
chr3 (217-269)||(20611811-20611863)
chr3 (219-266)||(43012405-43012452)
chr3 (219-274)||(9584049-9584104)
chr3 (219-269)||(45163885-45163935)
chr3 (220-269)||(47235729-47235778)
chr3 (219-274)||(40023568-40023623)
chr3 (219-274)||(45398826-45398881)
chr3 (219-269)||(1652887-1652937)
chr3 (219-269)||(2392507-2392557)
chr3 (219-269)||(47945736-47945786)
chr3 (219-268)||(2394255-2394304)
chr3 (219-258)||(30127292-30127332)
[»] chr8 (16 HSPs)
chr8 (219-269)||(9519529-9519579)
chr8 (219-269)||(24995396-24995446)
chr8 (219-269)||(34389006-34389056)
chr8 (217-266)||(37986862-37986911)
chr8 (219-265)||(16457466-16457512)
chr8 (219-268)||(31207364-31207413)
chr8 (219-274)||(15821375-15821430)
chr8 (219-269)||(20138456-20138506)
chr8 (219-269)||(32066296-32066346)
chr8 (219-269)||(41893402-41893451)
chr8 (219-267)||(17657005-17657053)
chr8 (219-274)||(36630867-36630922)
chr8 (219-269)||(12898275-12898325)
chr8 (219-269)||(30236129-30236179)
chr8 (219-269)||(32945704-32945754)
chr8 (220-269)||(15906717-15906766)
[»] chr7 (15 HSPs)
chr7 (219-277)||(3867146-3867204)
chr7 (219-269)||(3419657-3419707)
chr7 (219-269)||(37795019-37795069)
chr7 (219-269)||(38306291-38306341)
chr7 (219-267)||(10244212-10244260)
chr7 (219-269)||(5860289-5860339)
chr7 (219-269)||(47325886-47325936)
chr7 (219-274)||(6584939-6584994)
chr7 (219-274)||(33435139-33435194)
chr7 (219-266)||(41089752-41089799)
chr7 (219-269)||(34389992-34390042)
chr7 (219-269)||(44353565-44353615)
chr7 (219-258)||(6716748-6716787)
chr7 (219-274)||(35745823-35745878)
chr7 (219-267)||(12480916-12480965)
[»] chr2 (17 HSPs)
chr2 (219-269)||(39338866-39338916)
chr2 (219-274)||(7874321-7874376)
chr2 (219-274)||(14405228-14405283)
chr2 (220-269)||(4471954-4472003)
chr2 (219-266)||(387203-387250)
chr2 (217-269)||(34230229-34230281)
chr2 (219-269)||(2062919-2062969)
chr2 (219-269)||(16960012-16960062)
chr2 (219-268)||(1269513-1269562)
chr2 (219-269)||(10524127-10524181)
chr2 (218-267)||(16952386-16952435)
chr2 (218-267)||(17023051-17023100)
chr2 (218-267)||(17060357-17060406)
chr2 (218-267)||(17079198-17079247)
chr2 (219-268)||(22885135-22885184)
chr2 (219-267)||(13337304-13337352)
chr2 (217-269)||(15126411-15126463)
[»] chr1 (14 HSPs)
chr1 (219-269)||(31585761-31585811)
chr1 (219-269)||(5389422-5389472)
chr1 (219-269)||(41920482-41920532)
chr1 (219-269)||(30685905-30685955)
chr1 (219-269)||(46692820-46692870)
chr1 (219-269)||(24658959-24659009)
chr1 (219-268)||(19598666-19598715)
chr1 (217-268)||(20113523-20113574)
chr1 (219-274)||(24684474-24684529)
chr1 (219-274)||(46814463-46814518)
chr1 (219-269)||(5459191-5459241)
chr1 (219-269)||(27102221-27102271)
chr1 (219-268)||(24449932-24449981)
chr1 (219-264)||(27031846-27031891)
[»] chr6 (4 HSPs)
chr6 (219-269)||(3117523-3117573)
chr6 (219-267)||(16510304-16510352)
chr6 (219-267)||(32935342-32935390)
chr6 (219-247)||(12794145-12794173)
[»] chr5 (9 HSPs)
chr5 (219-269)||(18593273-18593323)
chr5 (219-269)||(34378128-34378178)
chr5 (219-274)||(29087511-29087566)
chr5 (219-269)||(698391-698441)
chr5 (217-267)||(8297496-8297546)
chr5 (219-269)||(22675325-22675375)
chr5 (235-268)||(7162319-7162352)
chr5 (219-258)||(7195251-7195290)
chr5 (218-269)||(27713098-27713149)
[»] scaffold0068 (1 HSPs)
scaffold0068 (219-269)||(35773-35822)
[»] scaffold0343 (1 HSPs)
scaffold0343 (235-269)||(5751-5785)
[»] scaffold0200 (1 HSPs)
scaffold0200 (219-269)||(19413-19463)
[»] scaffold0119 (1 HSPs)
scaffold0119 (219-268)||(42140-42189)
[»] scaffold0050 (1 HSPs)
scaffold0050 (219-255)||(36737-36773)


Alignment Details
Target: chr4 (Bit Score: 74; Significance: 5e-34; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 20 - 121
Target Start/End: Complemental strand, 7521550 - 7521449
Alignment:
Q  20 tgaagattagtcatctttcctattccaagtggcatagaagttaagttatcacaataatccagctcaagatgttgaagacttgccaacttccaaagatgtt 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||  |||| || ||||||||||||||| ||    
T  7521550 tgaagattagtcatctttcctattccaagtggcatagaagttaagttatcacaatcatccaactcaagatgtctaagaattaccaacttccaaagatctt 7521451  T
Q  120 tg 121  Q
    ||    
T  7521450 tg 7521449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 20 - 121
Target Start/End: Original strand, 7127642 - 7127743
Alignment:
Q  20 tgaagattagtcatctttcctattccaagtggcatagaagttaagttatcacaataatccagctcaagatgttgaagacttgccaacttccaaagatgtt 119  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| ||||||||||  ||| ||| ||||||||||||||| ||    
T  7127642 tgaagattagtcatctttcctattccacgtggcatagaagttaagttatcacaatcatccaactcaagatgtctaaggcttaccaacttccaaagatctt 7127741  T
Q  120 tg 121  Q
    ||    
T  7127742 tg 7127743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 20 - 121
Target Start/End: Complemental strand, 7529615 - 7529514
Alignment:
Q  20 tgaagattagtcatctttcctattccaagtggcatagaagttaagttatcacaataatccagctcaagatgttgaagacttgccaacttccaaagatgtt 119  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| ||||||||||  ||||||| | ||||||||||||| ||    
T  7529615 tgaagattagtcatctttcctattccacgtggcatagaagttaagttatgacaataatccaactcaagatgtctaagacttactaacttccaaagatctt 7529516  T
Q  120 tg 121  Q
    ||    
T  7529515 tg 7529514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 20 - 121
Target Start/End: Complemental strand, 7495892 - 7495791
Alignment:
Q  20 tgaagattagtcatctttcctattccaagtggcatagaagttaagttatcacaataatccagctcaagatgttgaagacttgccaacttccaaagatgtt 119  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||| ||||  ||||| ||||||||||  ||||||| ||||||||||||||| ||    
T  7495892 tgaagattagtcatctttcctattccacgtggcatagaagttaagttatgacaaagatccaactcaagatgtctaagacttaccaacttccaaagatctt 7495793  T
Q  120 tg 121  Q
    ||    
T  7495792 tg 7495791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 20 - 113
Target Start/End: Original strand, 7717087 - 7717180
Alignment:
Q  20 tgaagattagtcatctttcctattccaagtggcatagaagttaagttatcacaataatccagctcaagatgttgaagacttgccaacttccaaa 113  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||  ||||||| ||||||||||||    
T  7717087 tgaagcttagtcatctttcctattccaagtggcatagaagttaagttattacaatcatccaactcaagatgtctaagacttaccaacttccaaa 7717180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 20 - 121
Target Start/End: Original strand, 7720917 - 7721018
Alignment:
Q  20 tgaagattagtcatctttcctattccaagtggcatagaagttaagttatcacaataatccagctcaagatgttgaagacttgccaacttccaaagatgtt 119  Q
    |||||||||||||||||||||||||||| ||||||||||||||||| ||  |||||||||| |||||||||| |||||||| |||||||| |||||| ||    
T  7720917 tgaagattagtcatctttcctattccaattggcatagaagttaagtcatggcaataatccaactcaagatgtcgaagacttaccaacttctaaagatctt 7721016  T
Q  120 tg 121  Q
    ||    
T  7721017 tg 7721018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 20 - 90
Target Start/End: Complemental strand, 7483493 - 7483423
Alignment:
Q  20 tgaagattagtcatctttcctattccaagtggcatagaagttaagttatcacaataatccagctcaagatg 90  Q
    ||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| |||||||||    
T  7483493 tgaagattagtcatctttcctattccacgtggcatagaagttaagtcatcacaataatccaactcaagatg 7483423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 124 - 179
Target Start/End: Complemental strand, 7521414 - 7521359
Alignment:
Q  124 aaagagtcgccaagttgattaattcagttatagaccttgggagctcttcaacctta 179  Q
    |||||||| ||||||| | |||||||||||||||||||||||||||||||||||||    
T  7521414 aaagagtctccaagttaactaattcagttatagaccttgggagctcttcaacctta 7521359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 219 - 269
Target Start/End: Original strand, 8255057 - 8255107
Alignment:
Q  219 ttttgattcgagatcaggagtcagttctttgactcaagttggtttttgggc 269  Q
    ||||||| ||||||||| |||||||||||||||||||||||||||||||||    
T  8255057 ttttgatccgagatcagaagtcagttctttgactcaagttggtttttgggc 8255107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 219 - 269
Target Start/End: Original strand, 8268475 - 8268525
Alignment:
Q  219 ttttgattcgagatcaggagtcagttctttgactcaagttggtttttgggc 269  Q
    ||||||| ||||||||| |||||||||||||||||||||||||||||||||    
T  8268475 ttttgatccgagatcagaagtcagttctttgactcaagttggtttttgggc 8268525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 124 - 176
Target Start/End: Original strand, 7127778 - 7127830
Alignment:
Q  124 aaagagtcgccaagttgattaattcagttatagaccttgggagctcttcaacc 176  Q
    |||||||| ||||||| | ||||||||||||||||||||||||||||||||||    
T  7127778 aaagagtctccaagttaactaattcagttatagaccttgggagctcttcaacc 7127830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 124 - 176
Target Start/End: Complemental strand, 7495756 - 7495704
Alignment:
Q  124 aaagagtcgccaagttgattaattcagttatagaccttgggagctcttcaacc 176  Q
    |||||||| ||||||| | ||||||||||||||||||||||||||||||||||    
T  7495756 aaagagtctccaagttaactaattcagttatagaccttgggagctcttcaacc 7495704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 124 - 176
Target Start/End: Complemental strand, 7529479 - 7529427
Alignment:
Q  124 aaagagtcgccaagttgattaattcagttatagaccttgggagctcttcaacc 176  Q
    |||||||| ||||||| | ||||||||||||||||||||||||||||||||||    
T  7529479 aaagagtctccaagttaactaattcagttatagaccttgggagctcttcaacc 7529427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 124 - 176
Target Start/End: Original strand, 7721053 - 7721105
Alignment:
Q  124 aaagagtcgccaagttgattaattcagttatagaccttgggagctcttcaacc 176  Q
    |||||||| ||||||| ||||||||||||||||||||||||||||| ||||||    
T  7721053 aaagagtctccaagttaattaattcagttatagaccttgggagctcctcaacc 7721105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 219 - 268
Target Start/End: Complemental strand, 30167615 - 30167566
Alignment:
Q  219 ttttgattcgagatcaggagtcagttctttgactcaagttggtttttggg 268  Q
    ||||||||||||||| |||||| |||||||||||||||||| ||||||||    
T  30167615 ttttgattcgagatcgggagtcggttctttgactcaagttgatttttggg 30167566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 219 - 268
Target Start/End: Original strand, 30964471 - 30964520
Alignment:
Q  219 ttttgattcgagatcaggagtcagttctttgactcaagttggtttttggg 268  Q
    |||||||||| |||| |||||| |||||||||||||||||||||||||||    
T  30964471 ttttgattcgtgatcgggagtccgttctttgactcaagttggtttttggg 30964520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 213 - 260
Target Start/End: Complemental strand, 36962672 - 36962626
Alignment:
Q  213 gattatttttgattcgagatcaggagtcagttctttgactcaagttgg 260  Q
    ||||| |||||||||||||||||||||||| |||||||||||||||||    
T  36962672 gattacttttgattcgagatcaggagtcag-tctttgactcaagttgg 36962626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 219 - 265
Target Start/End: Original strand, 4305755 - 4305801
Alignment:
Q  219 ttttgattcgagatcaggagtcagttctttgactcaagttggttttt 265  Q
    ||||||||||||||| ||||| ||||||||| |||||||||||||||    
T  4305755 ttttgattcgagatcgggagttagttctttgtctcaagttggttttt 4305801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 219 - 269
Target Start/End: Original strand, 25753202 - 25753252
Alignment:
Q  219 ttttgattcgagatcaggagtcagttctttgactcaagttggtttttgggc 269  Q
    ||||||||||||||| ||||||||||||||| |||||||| | ||||||||    
T  25753202 ttttgattcgagatcgggagtcagttctttggctcaagtttgattttgggc 25753252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 219 - 269
Target Start/End: Original strand, 38929857 - 38929907
Alignment:
Q  219 ttttgattcgagatcaggagtcagttctttgactcaagttggtttttgggc 269  Q
    |||||||||||||||| |||||||||||||| |||||||| | ||||||||    
T  38929857 ttttgattcgagatcaagagtcagttctttggctcaagtttgattttgggc 38929907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 213 - 258
Target Start/End: Complemental strand, 19815281 - 19815236
Alignment:
Q  213 gattatttttgattcgagatcaggagtcagttctttgactcaagtt 258  Q
    ||||| |||| |||||||||||||||||||||||||| ||||||||    
T  19815281 gattactttttattcgagatcaggagtcagttctttggctcaagtt 19815236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 219 - 268
Target Start/End: Complemental strand, 53823472 - 53823423
Alignment:
Q  219 ttttgattcgagatcaggagtcagttctttgactcaagttggtttttggg 268  Q
    ||||||||||||||| ||||||||||||||| |||||||| | |||||||    
T  53823472 ttttgattcgagatcgggagtcagttctttggctcaagtttggttttggg 53823423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 124 - 180
Target Start/End: Original strand, 7717223 - 7717278
Alignment:
Q  124 aaagagtcgccaagttgattaattcagttatagaccttgggagctcttcaaccttat 180  Q
    |||||||| ||||||| | ||||| ||||||||||||| ||||||||||||||||||    
T  7717223 aaagagtctccaagttaaataattgagttatagacctt-ggagctcttcaaccttat 7717278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 218 - 269
Target Start/End: Original strand, 28966896 - 28966947
Alignment:
Q  218 tttttgattcgagatcaggagtcagttctttgactcaagttggtttttgggc 269  Q
    |||||||||||||||  ||||||||||||||| |||||||| | ||||||||    
T  28966896 tttttgattcgagattgggagtcagttctttggctcaagtttggttttgggc 28966947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 224 - 258
Target Start/End: Original strand, 19673135 - 19673169
Alignment:
Q  224 attcgagatcaggagtcagttctttgactcaagtt 258  Q
    |||||||||||||||||||||||||| ||||||||    
T  19673135 attcgagatcaggagtcagttctttggctcaagtt 19673169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 258
Target Start/End: Complemental strand, 22811213 - 22811172
Alignment:
Q  217 atttttgattcgagatcaggagtcagttctttgactcaagtt 258  Q
    |||||| |||||||||| ||||||||||||||| ||||||||    
T  22811213 attttttattcgagatcgggagtcagttctttggctcaagtt 22811172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 176
Target Start/End: Complemental strand, 7483357 - 7483305
Alignment:
Q  124 aaagagtcgccaagttgattaattcagttatagaccttgggagctcttcaacc 176  Q
    |||||||| ||||||| | ||| |||||||| |||||||||||||| ||||||    
T  7483357 aaagagtctccaagttaactaaatcagttattgaccttgggagctcctcaacc 7483305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 219 - 267
Target Start/End: Complemental strand, 35341389 - 35341341
Alignment:
Q  219 ttttgattcgagatcaggagtcagttctttgactcaagttggtttttgg 267  Q
    ||||||| ||||||| | |||||| |||||| |||||||||||||||||    
T  35341389 ttttgatccgagatcggaagtcagctctttggctcaagttggtttttgg 35341341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 219 - 259
Target Start/End: Complemental strand, 39041325 - 39041285
Alignment:
Q  219 ttttgattcgagatcaggagtcagttctttgactcaagttg 259  Q
    ||||||||||||||||||||||||||  | |||||||||||    
T  39041325 ttttgattcgagatcaggagtcagtttctagactcaagttg 39041285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 219 - 274
Target Start/End: Original strand, 19176532 - 19176587
Alignment:
Q  219 ttttgattcgagatcaggagtcagttctttgactcaagttggtttttgggcctttg 274  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||    
T  19176532 ttttgattcgagatcgggagtcagttctttgactcaagttggtttttgggcttttg 19176587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 219 - 269
Target Start/End: Original strand, 17550987 - 17551037
Alignment:
Q  219 ttttgattcgagatcaggagtcagttctttgactcaagttggtttttgggc 269  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  17550987 ttttgattcgagatcgggagtcagttctttgactcaagttggtttttgggc 17551037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 217 - 269
Target Start/End: Original strand, 20611811 - 20611863
Alignment:
Q  217 atttttgattcgagatcaggagtcagttctttgactcaagttggtttttgggc 269  Q
    ||||||||||||||||| |||||||||||||||||| ||||||||||||||||    
T  20611811 atttttgattcgagatcgggagtcagttctttgacttaagttggtttttgggc 20611863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 219 - 266
Target Start/End: Original strand, 43012405 - 43012452
Alignment:
Q  219 ttttgattcgagatcaggagtcagttctttgactcaagttggtttttg 266  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||    
T  43012405 ttttgattcgagatcgggagtcagttctttgactcaagttggtttttg 43012452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 219 - 274
Target Start/End: Complemental strand, 9584104 - 9584049
Alignment:
Q  219 ttttgattcgagatcaggagtcagttctttgactcaagttggtttttgggcctttg 274  Q
    ||||||||||||||| ||||||||||||||| |||||| |||||||||||| ||||    
T  9584104 ttttgattcgagatcgggagtcagttctttgtctcaagatggtttttgggcttttg 9584049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 219 - 269
Target Start/End: Original strand, 45163885 - 45163935
Alignment:
Q  219 ttttgattcgagatcaggagtcagttctttgactcaagttggtttttgggc 269  Q
    ||||||||||||||||| |||||||| |||| || ||||||||||||||||    
T  45163885 ttttgattcgagatcagaagtcagttttttgtcttaagttggtttttgggc 45163935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 220 - 269
Target Start/End: Original strand, 47235729 - 47235778
Alignment:
Q  220 tttgattcgagatcaggagtcagttctttgactcaagttggtttttgggc 269  Q
    ||||||||||||||  ||||| ||||||||||| ||||||||||||||||    
T  47235729 tttgattcgagatcgagagtcggttctttgacttaagttggtttttgggc 47235778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 219 - 274
Target Start/End: Complemental strand, 40023623 - 40023568
Alignment:
Q  219 ttttgattcgagatcaggagtcagttctttgactcaagttggtttttgggcctttg 274  Q
    ||||||||||||||| ||||||  ||||||| || |||||||||||||||| ||||    
T  40023623 ttttgattcgagatcgggagtcgattctttggcttaagttggtttttgggcttttg 40023568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 219 - 274
Target Start/End: Original strand, 45398826 - 45398881
Alignment:
Q  219 ttttgattcgagatcaggagtcagttctttgactcaagttggtttttgggcctttg 274  Q
    |||||||||||||||  ||||||| ||||||| | |||||||||||||||| ||||    
T  45398826 ttttgattcgagatcgagagtcagctctttgatttaagttggtttttgggcttttg 45398881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 219 - 269
Target Start/End: Complemental strand, 1652937 - 1652887
Alignment:
Q  219 ttttgattcgagatcaggagtcagttctttgactcaagttggtttttgggc 269  Q
    ||||||||||||||||||||| |||||||||  ||||||| | ||||||||    
T  1652937 ttttgattcgagatcaggagttagttctttggttcaagtttggttttgggc 1652887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 219 - 269
Target Start/End: Complemental strand, 2392557 - 2392507
Alignment:
Q  219 ttttgattcgagatcaggagtcagttctttgactcaagttggtttttgggc 269  Q
    ||||||||||||||  | ||||||||||||| || ||||||||||||||||    
T  2392557 ttttgattcgagattggaagtcagttctttgtcttaagttggtttttgggc 2392507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 219 - 269
Target Start/End: Original strand, 47945736 - 47945786
Alignment:
Q  219 ttttgattcgagatcaggagtcagttctttgactcaagttggtttttgggc 269  Q
    ||||||||||||||| |||||||||| |||| |||||||| | ||||||||    
T  47945736 ttttgattcgagatcgggagtcagttatttggctcaagtttgattttgggc 47945786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 268
Target Start/End: Complemental strand, 2394304 - 2394255
Alignment:
Q  219 ttttgattcgagatcaggagtcagttctttgactcaagttggtttttggg 268  Q
    ||||||||||||||  | ||||||||||||| || |||||||||||||||    
T  2394304 ttttgattcgagattggaagtcagttctttgtcttaagttggtttttggg 2394255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 219 - 258
Target Start/End: Original strand, 30127292 - 30127332
Alignment:
Q  219 ttttgattcgagatcaggagtcagttct-ttgactcaagtt 258  Q
    ||||||||||||||| |||||||||||| ||||||||||||    
T  30127292 ttttgattcgagatcgggagtcagttctcttgactcaagtt 30127332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 7e-18; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 219 - 269
Target Start/End: Original strand, 9519529 - 9519579
Alignment:
Q  219 ttttgattcgagatcaggagtcagttctttgactcaagttggtttttgggc 269  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  9519529 ttttgattcgagatcgggagtcagttctttgactcaagttggtttttgggc 9519579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 219 - 269
Target Start/End: Complemental strand, 24995446 - 24995396
Alignment:
Q  219 ttttgattcgagatcaggagtcagttctttgactcaagttggtttttgggc 269  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  24995446 ttttgattcgagatcgggagtcagttctttgactcaagttggtttttgggc 24995396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 219 - 269
Target Start/End: Complemental strand, 34389056 - 34389006
Alignment:
Q  219 ttttgattcgagatcaggagtcagttctttgactcaagttggtttttgggc 269  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  34389056 ttttgattcgagatcaagagtcagttctttgactcaagttggtttttgggc 34389006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 217 - 266
Target Start/End: Complemental strand, 37986911 - 37986862
Alignment:
Q  217 atttttgattcgagatcaggagtcagttctttgactcaagttggtttttg 266  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  37986911 atttttgattcgagatcgggagtcagttctttgactcaagttggtttttg 37986862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 219 - 265
Target Start/End: Complemental strand, 16457512 - 16457466
Alignment:
Q  219 ttttgattcgagatcaggagtcagttctttgactcaagttggttttt 265  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||    
T  16457512 ttttgattcgagatcgggagtcagttctttgactcaagttggttttt 16457466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 219 - 268
Target Start/End: Complemental strand, 31207413 - 31207364
Alignment:
Q  219 ttttgattcgagatcaggagtcagttctttgactcaagttggtttttggg 268  Q
    ||||||||||||||| |||||||||||||||||||||||||| |||||||    
T  31207413 ttttgattcgagatcgggagtcagttctttgactcaagttggattttggg 31207364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 219 - 274
Target Start/End: Complemental strand, 15821430 - 15821375
Alignment:
Q  219 ttttgattcgagatcaggagtcagttctttgactcaagttggtttttgggcctttg 274  Q
    ||||||||||||||| |||||||| ||||||||| | |||||||||||||| ||||    
T  15821430 ttttgattcgagatcgggagtcagctctttgacttatgttggtttttgggcttttg 15821375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 219 - 269
Target Start/End: Original strand, 20138456 - 20138506
Alignment:
Q  219 ttttgattcgagatcaggagtcagttctttgactcaagttggtttttgggc 269  Q
    |||||||| |||||| |||||||||||||||||| | ||||||||||||||    
T  20138456 ttttgatttgagatcgggagtcagttctttgacttatgttggtttttgggc 20138506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 219 - 269
Target Start/End: Complemental strand, 32066346 - 32066296
Alignment:
Q  219 ttttgattcgagatcaggagtcagttctttgactcaagttggtttttgggc 269  Q
    ||||||||||| ||| |||||||| |||||||||| |||||||||||||||    
T  32066346 ttttgattcgaaatcgggagtcagctctttgactccagttggtttttgggc 32066296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 219 - 269
Target Start/End: Complemental strand, 41893451 - 41893402
Alignment:
Q  219 ttttgattcgagatcaggagtcagttctttgactcaagttggtttttgggc 269  Q
    ||||||||||||||| ||||||||||||||| |||||||| ||||||||||    
T  41893451 ttttgattcgagatcgggagtcagttctttgtctcaagtt-gtttttgggc 41893402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 219 - 267
Target Start/End: Complemental strand, 17657053 - 17657005
Alignment:
Q  219 ttttgattcgagatcaggagtcagttctttgactcaagttggtttttgg 267  Q
    ||||||||||||||| ||||||||||||||| |||||||| | ||||||    
T  17657053 ttttgattcgagatcgggagtcagttctttggctcaagtttggttttgg 17657005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 219 - 274
Target Start/End: Original strand, 36630867 - 36630922
Alignment:
Q  219 ttttgattcgagatcaggagtcagttctttgactcaagttggtttttgggcctttg 274  Q
    |||| |||||||||| || |||||||||||||||| |||| |||||||||| ||||    
T  36630867 ttttaattcgagatcgggtgtcagttctttgactctagtttgtttttgggcttttg 36630922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 219 - 269
Target Start/End: Complemental strand, 12898325 - 12898275
Alignment:
Q  219 ttttgattcgagatcaggagtcagttctttgactcaagttggtttttgggc 269  Q
    ||||||||||||||| |||||||||| | | ||||||||||||||| ||||    
T  12898325 ttttgattcgagatccggagtcagttatctaactcaagttggttttggggc 12898275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 219 - 269
Target Start/End: Complemental strand, 30236179 - 30236129
Alignment:
Q  219 ttttgattcgagatcaggagtcagttctttgactcaagttggtttttgggc 269  Q
    ||||||||||||||| |||||||||||||||  ||||||| | ||||||||    
T  30236179 ttttgattcgagatcgggagtcagttctttggttcaagtttggttttgggc 30236129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 219 - 269
Target Start/End: Complemental strand, 32945754 - 32945704
Alignment:
Q  219 ttttgattcgagatcaggagtcagttctttgactcaagttggtttttgggc 269  Q
    ||||||||||||||| ||||||| |||||||| ||||||| | ||||||||    
T  32945754 ttttgattcgagatcgggagtcaattctttgattcaagtttggttttgggc 32945704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 269
Target Start/End: Original strand, 15906717 - 15906766
Alignment:
Q  220 tttgattcgagatcaggagtcagttctttgactcaagttggtttttgggc 269  Q
    |||||||||||||| |||||||||||||||  ||||||| | ||||||||    
T  15906717 tttgattcgagatcgggagtcagttctttggttcaagtttggttttgggc 15906766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 7e-18; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 219 - 277
Target Start/End: Original strand, 3867146 - 3867204
Alignment:
Q  219 ttttgattcgagatcaggagtcagttctttgactcaagttggtttttgggcctttgctt 277  Q
    ||||||||||||| | ||||||||||||||||||||||||||||||||||| |||||||    
T  3867146 ttttgattcgagaccgggagtcagttctttgactcaagttggtttttgggcttttgctt 3867204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 219 - 269
Target Start/End: Complemental strand, 3419707 - 3419657
Alignment:
Q  219 ttttgattcgagatcaggagtcagttctttgactcaagttggtttttgggc 269  Q
    ||||||||||||||| |||||||| ||||||||||||||||||||||||||    
T  3419707 ttttgattcgagatcgggagtcagctctttgactcaagttggtttttgggc 3419657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 219 - 269
Target Start/End: Original strand, 37795019 - 37795069
Alignment:
Q  219 ttttgattcgagatcaggagtcagttctttgactcaagttggtttttgggc 269  Q
    ||||||||||||||| |||||||||||||||| ||||||||||||||||||    
T  37795019 ttttgattcgagatcgggagtcagttctttgagtcaagttggtttttgggc 37795069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 219 - 269
Target Start/End: Original strand, 38306291 - 38306341
Alignment:
Q  219 ttttgattcgagatcaggagtcagttctttgactcaagttggtttttgggc 269  Q
    ||||||||||||||  |||||||||||||||||||||||||||||||||||    
T  38306291 ttttgattcgagattgggagtcagttctttgactcaagttggtttttgggc 38306341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 219 - 267
Target Start/End: Original strand, 10244212 - 10244260
Alignment:
Q  219 ttttgattcgagatcaggagtcagttctttgactcaagttggtttttgg 267  Q
    ||||||||||||||| |||||||||||||||||||||||| ||||||||    
T  10244212 ttttgattcgagatcgggagtcagttctttgactcaagttagtttttgg 10244260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 219 - 269
Target Start/End: Complemental strand, 5860339 - 5860289
Alignment:
Q  219 ttttgattcgagatcaggagtcagttctttgactcaagttggtttttgggc 269  Q
    ||||||||||||||| ||||||| ||||||||| |||||||||||||||||    
T  5860339 ttttgattcgagatcgggagtcaattctttgacgcaagttggtttttgggc 5860289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 219 - 269
Target Start/End: Complemental strand, 47325936 - 47325886
Alignment:
Q  219 ttttgattcgagatcaggagtcagttctttgactcaagttggtttttgggc 269  Q
    |||||||| |||||| |||||||| ||||||||||||||||||||||||||    
T  47325936 ttttgatttgagatcgggagtcagctctttgactcaagttggtttttgggc 47325886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 219 - 274
Target Start/End: Original strand, 6584939 - 6584994
Alignment:
Q  219 ttttgattcgagatcaggagtcagttctttgactcaagttggtttttgggcctttg 274  Q
    ||||||||||||||| |||||||| |||||| || |||||||||||||||| ||||    
T  6584939 ttttgattcgagatcgggagtcagctctttggcttaagttggtttttgggcttttg 6584994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 219 - 274
Target Start/End: Original strand, 33435139 - 33435194
Alignment:
Q  219 ttttgattcgagatcaggagtcagttctttgactcaagttggtttttgggcctttg 274  Q
    ||||||||||||||| ||||||||||||||| |||||||| |||| ||||| ||||    
T  33435139 ttttgattcgagatcgggagtcagttctttgtctcaagttcgtttgtgggcatttg 33435194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 219 - 266
Target Start/End: Complemental strand, 41089799 - 41089752
Alignment:
Q  219 ttttgattcgagatcaggagtcagttctttgactcaagttggtttttg 266  Q
    ||||||||||||||  |||||||| |||||||||||||||||||||||    
T  41089799 ttttgattcgagattgggagtcagctctttgactcaagttggtttttg 41089752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 219 - 269
Target Start/End: Original strand, 34389992 - 34390042
Alignment:
Q  219 ttttgattcgagatcaggagtcagttctttgactcaagttggtttttgggc 269  Q
    ||||||||||||||| |||||||| |||||| || ||||||||||||||||    
T  34389992 ttttgattcgagatcgggagtcagctctttggcttaagttggtttttgggc 34390042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 219 - 269
Target Start/End: Complemental strand, 44353615 - 44353565
Alignment:
Q  219 ttttgattcgagatcaggagtcagttctttgactcaagttggtttttgggc 269  Q
    |||||||| |||||| |||||||||||||||||| | ||||||||||||||    
T  44353615 ttttgatttgagatcgggagtcagttctttgacttatgttggtttttgggc 44353565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 219 - 258
Target Start/End: Complemental strand, 6716787 - 6716748
Alignment:
Q  219 ttttgattcgagatcaggagtcagttctttgactcaagtt 258  Q
    ||||||||||||||| ||||||||||||||| ||||||||    
T  6716787 ttttgattcgagatcgggagtcagttctttggctcaagtt 6716748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 219 - 274
Target Start/End: Complemental strand, 35745878 - 35745823
Alignment:
Q  219 ttttgattcgagatcaggagtcagttctttgactcaagttggtttttgggcctttg 274  Q
    ||||||||||||||| | |||||  |||||| ||||||||||||||||||| ||||    
T  35745878 ttttgattcgagatcggaagtcatctctttggctcaagttggtttttgggcttttg 35745823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 267
Target Start/End: Original strand, 12480916 - 12480965
Alignment:
Q  219 ttttgattcgagatcaggagtcagttctttgactcaag-ttggtttttgg 267  Q
    ||||||||||||||| |||||||||||||||  ||||| |||||||||||    
T  12480916 ttttgattcgagatcgggagtcagttctttggttcaagtttggtttttgg 12480965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 7e-18; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 219 - 269
Target Start/End: Complemental strand, 39338916 - 39338866
Alignment:
Q  219 ttttgattcgagatcaggagtcagttctttgactcaagttggtttttgggc 269  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  39338916 ttttgattcgagatcgggagtcagttctttgactcaagttggtttttgggc 39338866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 219 - 274
Target Start/End: Original strand, 7874321 - 7874376
Alignment:
Q  219 ttttgattcgagatcaggagtcagttctttgactcaagttggtttttgggcctttg 274  Q
    ||||||||||||||| |||||||| |||||||||||||||||||||||||| ||||    
T  7874321 ttttgattcgagatcgggagtcagctctttgactcaagttggtttttgggcttttg 7874376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 219 - 274
Target Start/End: Original strand, 14405228 - 14405283
Alignment:
Q  219 ttttgattcgagatcaggagtcagttctttgactcaagttggtttttgggcctttg 274  Q
    ||||||||||||||| |||||||| |||||| ||||||||||||||||||| ||||    
T  14405228 ttttgattcgagatcgggagtcagctctttggctcaagttggtttttgggcttttg 14405283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 220 - 269
Target Start/End: Original strand, 4471954 - 4472003
Alignment:
Q  220 tttgattcgagatcaggagtcagttctttgactcaagttggtttttgggc 269  Q
    |||||||||||||| |||||||||||||||| ||||||| ||||||||||    
T  4471954 tttgattcgagatcgggagtcagttctttgattcaagtttgtttttgggc 4472003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 219 - 266
Target Start/End: Original strand, 387203 - 387250
Alignment:
Q  219 ttttgattcgagatcaggagtcagttctttgactcaagttggtttttg 266  Q
    |||||||| |||||| ||||||| ||||||||||||||||||||||||    
T  387203 ttttgatttgagatcgggagtcaattctttgactcaagttggtttttg 387250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 217 - 269
Target Start/End: Original strand, 34230229 - 34230281
Alignment:
Q  217 atttttgattcgagatcaggagtcagttctttgactcaagttggtttttgggc 269  Q
    |||||| ||||||||||||||||||||||||||  ||||||| | ||||||||    
T  34230229 attttttattcgagatcaggagtcagttctttggatcaagtttgattttgggc 34230281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 219 - 269
Target Start/End: Original strand, 2062919 - 2062969
Alignment:
Q  219 ttttgattcgagatcaggagtcagttctttgactcaagttggtttttgggc 269  Q
    ||||||||||||||| |||||||| |||||| |||||||| | ||||||||    
T  2062919 ttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggc 2062969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 219 - 269
Target Start/End: Original strand, 16960012 - 16960062
Alignment:
Q  219 ttttgattcgagatcaggagtcagttctttgactcaagttggtttttgggc 269  Q
    |||||||||||||||  |||||||||||||| |||||||| | ||||||||    
T  16960012 ttttgattcgagatcgagagtcagttctttggctcaagtttggttttgggc 16960062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 268
Target Start/End: Original strand, 1269513 - 1269562
Alignment:
Q  219 ttttgattcgagatcaggagtcagttctttgactcaagttggtttttggg 268  Q
    ||||||||||||||| | ||||||||||||| |||||||| | |||||||    
T  1269513 ttttgattcgagatcggaagtcagttctttggctcaagtttggttttggg 1269562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 269
Target Start/End: Original strand, 10524127 - 10524181
Alignment:
Q  219 ttttgattcgagatcaggagtca----gttctttgactcaagttggtttttgggc 269  Q
    ||||||||||||||| |||||||     |||||||||||||||||||||||||||    
T  10524127 ttttgattcgagatcgggagtcaatatattctttgactcaagttggtttttgggc 10524181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 267
Target Start/End: Complemental strand, 16952435 - 16952386
Alignment:
Q  218 tttttgattcgagatcaggagtcagttctttgactcaagttggtttttgg 267  Q
    |||||||||||||||| |||| |||||||||| |||||||| | ||||||    
T  16952435 tttttgattcgagatcgggagccagttctttggctcaagtttggttttgg 16952386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 267
Target Start/End: Complemental strand, 17023100 - 17023051
Alignment:
Q  218 tttttgattcgagatcaggagtcagttctttgactcaagttggtttttgg 267  Q
    |||||||||||||||| |||| |||||||||| |||||||| | ||||||    
T  17023100 tttttgattcgagatcgggagccagttctttggctcaagtttggttttgg 17023051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 267
Target Start/End: Complemental strand, 17060406 - 17060357
Alignment:
Q  218 tttttgattcgagatcaggagtcagttctttgactcaagttggtttttgg 267  Q
    |||||||||||||||| |||| |||||||||| |||||||| | ||||||    
T  17060406 tttttgattcgagatcgggagccagttctttggctcaagtttggttttgg 17060357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 267
Target Start/End: Original strand, 17079198 - 17079247
Alignment:
Q  218 tttttgattcgagatcaggagtcagttctttgactcaagttggtttttgg 267  Q
    |||||||||||||||| |||| |||||||||| |||||||| | ||||||    
T  17079198 tttttgattcgagatcgggagccagttctttggctcaagtttggttttgg 17079247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 268
Target Start/End: Complemental strand, 22885184 - 22885135
Alignment:
Q  219 ttttgattcgagatcaggagtcagttctttgactcaagttggtttttggg 268  Q
    ||||||||||||||| |||||||||||||||  ||||||| | |||||||    
T  22885184 ttttgattcgagatcgggagtcagttctttggttcaagtttggttttggg 22885135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 219 - 267
Target Start/End: Original strand, 13337304 - 13337352
Alignment:
Q  219 ttttgattcgagatcaggagtcagttctttgactcaagttggtttttgg 267  Q
    ||||||||||| ||| | |||||||||||||||||||||| | ||||||    
T  13337304 ttttgattcgaaatcggaagtcagttctttgactcaagttaggttttgg 13337352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 217 - 269
Target Start/End: Complemental strand, 15126463 - 15126411
Alignment:
Q  217 atttttgattcgagatcaggagtcagttctttgactcaagttggtttttgggc 269  Q
    ||||||||||||||||| |||||| |||||||| |||| ||| | ||||||||    
T  15126463 atttttgattcgagatcgggagtcggttctttggctcatgtttggttttgggc 15126411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 7e-18; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 219 - 269
Target Start/End: Complemental strand, 31585811 - 31585761
Alignment:
Q  219 ttttgattcgagatcaggagtcagttctttgactcaagttggtttttgggc 269  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  31585811 ttttgattcgagatcgggagtcagttctttgactcaagttggtttttgggc 31585761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 219 - 269
Target Start/End: Complemental strand, 5389472 - 5389422
Alignment:
Q  219 ttttgattcgagatcaggagtcagttctttgactcaagttggtttttgggc 269  Q
    ||||||||||||||| |||||||||||||||||||||||| ||||||||||    
T  5389472 ttttgattcgagatcgggagtcagttctttgactcaagtttgtttttgggc 5389422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 219 - 269
Target Start/End: Original strand, 41920482 - 41920532
Alignment:
Q  219 ttttgattcgagatcaggagtcagttctttgactcaagttggtttttgggc 269  Q
    ||||||||||||||| |||||||||||||||||||||||||| ||||||||    
T  41920482 ttttgattcgagatcgggagtcagttctttgactcaagttggattttgggc 41920532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 219 - 269
Target Start/End: Complemental strand, 30685955 - 30685905
Alignment:
Q  219 ttttgattcgagatcaggagtcagttctttgactcaagttggtttttgggc 269  Q
    |||||||| |||||| |||||||||||||||||||||||||| ||||||||    
T  30685955 ttttgatttgagatcgggagtcagttctttgactcaagttggcttttgggc 30685905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 219 - 269
Target Start/End: Complemental strand, 46692870 - 46692820
Alignment:
Q  219 ttttgattcgagatcaggagtcagttctttgactcaagttggtttttgggc 269  Q
    ||||||||||||||| ||||| ||||||||| |||||||||||||||||||    
T  46692870 ttttgattcgagatcgggagttagttctttggctcaagttggtttttgggc 46692820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 219 - 269
Target Start/End: Original strand, 24658959 - 24659009
Alignment:
Q  219 ttttgattcgagatcaggagtcagttctttgactcaagttggtttttgggc 269  Q
    ||||||||||||||| |||||||| |||||| || ||||||||||||||||    
T  24658959 ttttgattcgagatcgggagtcagctctttggctgaagttggtttttgggc 24659009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 219 - 268
Target Start/End: Original strand, 19598666 - 19598715
Alignment:
Q  219 ttttgattcgagatcaggagtcagttctttgactcaagttggtttttggg 268  Q
    |||||||||||||||  ||||||||||||||||||||||| | |||||||    
T  19598666 ttttgattcgagatcgagagtcagttctttgactcaagtttgattttggg 19598715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 217 - 268
Target Start/End: Complemental strand, 20113574 - 20113523
Alignment:
Q  217 atttttgattcgagatcaggagtcagttctttgactcaagttggtttttggg 268  Q
    ||||||||||| ||||| ||| |||||||||| ||| |||||||||||||||    
T  20113574 atttttgattcaagatcgggaatcagttctttaacttaagttggtttttggg 20113523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 219 - 274
Target Start/End: Complemental strand, 24684529 - 24684474
Alignment:
Q  219 ttttgattcgagatcaggagtcagttctttgactcaagttggtttttgggcctttg 274  Q
    |||| |||||||||| |  |||||||||||||||| ||||||||||||||| ||||    
T  24684529 ttttaattcgagatcggatgtcagttctttgactctagttggtttttgggcttttg 24684474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 219 - 274
Target Start/End: Complemental strand, 46814518 - 46814463
Alignment:
Q  219 ttttgattcgagatcaggagtcagttctttgactcaagttggtttttgggcctttg 274  Q
    ||||||||||||||| |||||||| | |||| ||||||||||||||| ||| ||||    
T  46814518 ttttgattcgagatcgggagtcagctttttggctcaagttggttttttggcttttg 46814463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 219 - 269
Target Start/End: Original strand, 5459191 - 5459241
Alignment:
Q  219 ttttgattcgagatcaggagtcagttctttgactcaagttggtttttgggc 269  Q
    ||||||||||||||| ||||||| || ||||| |||||||| |||||||||    
T  5459191 ttttgattcgagatcgggagtcaattatttgattcaagttgatttttgggc 5459241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 219 - 269
Target Start/End: Original strand, 27102221 - 27102271
Alignment:
Q  219 ttttgattcgagatcaggagtcagttctttgactcaagttggtttttgggc 269  Q
    ||||||||||||||| |||||||||||||||  ||||||| | ||||||||    
T  27102221 ttttgattcgagatcgggagtcagttctttggatcaagtttggttttgggc 27102271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 268
Target Start/End: Complemental strand, 24449981 - 24449932
Alignment:
Q  219 ttttgattcgagatcaggagtcagttctttgactcaagttggtttttggg 268  Q
    |||||||| |||||| | ||||||||||||| || |||||||||||||||    
T  24449981 ttttgatttgagatcggaagtcagttctttgtcttaagttggtttttggg 24449932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 264
Target Start/End: Complemental strand, 27031891 - 27031846
Alignment:
Q  219 ttttgattcgagatcaggagtcagttctttgactcaagttggtttt 264  Q
    |||||||||||||||  ||||||| |||||| ||||||||||||||    
T  27031891 ttttgattcgagatcgagagtcagctctttggctcaagttggtttt 27031846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 219 - 269
Target Start/End: Original strand, 3117523 - 3117573
Alignment:
Q  219 ttttgattcgagatcaggagtcagttctttgactcaagttggtttttgggc 269  Q
    ||||||||| ||||| |||||||||||||||||||||||||||||||||||    
T  3117523 ttttgattcaagatcgggagtcagttctttgactcaagttggtttttgggc 3117573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 219 - 267
Target Start/End: Complemental strand, 16510352 - 16510304
Alignment:
Q  219 ttttgattcgagatcaggagtcagttctttgactcaagttggtttttgg 267  Q
    ||||||||||||||   ||||||||||||| ||||||||||||||||||    
T  16510352 ttttgattcgagattgagagtcagttcttttactcaagttggtttttgg 16510304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 219 - 267
Target Start/End: Complemental strand, 32935390 - 32935342
Alignment:
Q  219 ttttgattcgagatcaggagtcagttctttgactcaagttggtttttgg 267  Q
    ||||||||||||||| ||||||||||||| |||||||||| | ||||||    
T  32935390 ttttgattcgagatcgggagtcagttcttggactcaagtttgattttgg 32935342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 219 - 247
Target Start/End: Original strand, 12794145 - 12794173
Alignment:
Q  219 ttttgattcgagatcaggagtcagttctt 247  Q
    |||||||||||||||||||||||||||||    
T  12794145 ttttgattcgagatcaggagtcagttctt 12794173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 219 - 269
Target Start/End: Original strand, 18593273 - 18593323
Alignment:
Q  219 ttttgattcgagatcaggagtcagttctttgactcaagttggtttttgggc 269  Q
    ||||||||||||||| ||||| |||||||||||||||||||||||||||||    
T  18593273 ttttgattcgagatcgggagttagttctttgactcaagttggtttttgggc 18593323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 219 - 269
Target Start/End: Original strand, 34378128 - 34378178
Alignment:
Q  219 ttttgattcgagatcaggagtcagttctttgactcaagttggtttttgggc 269  Q
    ||||||||||||||| ||||||||||||||||| |||||||||||||||||    
T  34378128 ttttgattcgagatcgggagtcagttctttgacacaagttggtttttgggc 34378178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 219 - 274
Target Start/End: Original strand, 29087511 - 29087566
Alignment:
Q  219 ttttgattcgagatcaggagtcagttctttgactcaagttggtttttgggcctttg 274  Q
    |||||||||||||||||||||||||||||||| |||| ||||||| ||||| ||||    
T  29087511 ttttgattcgagatcaggagtcagttctttgaatcaaattggtttctgggcttttg 29087566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 219 - 269
Target Start/End: Original strand, 698391 - 698441
Alignment:
Q  219 ttttgattcgagatcaggagtcagttctttgactcaagttggtttttgggc 269  Q
    ||||||||||||||| |||||||  ||||||||||||||||||||||||||    
T  698391 ttttgattcgagatcgggagtcaactctttgactcaagttggtttttgggc 698441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 217 - 267
Target Start/End: Original strand, 8297496 - 8297546
Alignment:
Q  217 atttttgattcgagatcaggagtcagttctttgactcaagttggtttttgg 267  Q
    ||||||||||||||||| ||||||||||||||| |||||||| | ||||||    
T  8297496 atttttgattcgagatcgggagtcagttctttggctcaagtttggttttgg 8297546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 219 - 269
Target Start/End: Complemental strand, 22675375 - 22675325
Alignment:
Q  219 ttttgattcgagatcaggagtcagttctttgactcaagttggtttttgggc 269  Q
    ||||||||||||||| ||||||||||||||| |||||||| | ||||||||    
T  22675375 ttttgattcgagatcgggagtcagttctttggctcaagtttggttttgggc 22675325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 235 - 268
Target Start/End: Complemental strand, 7162352 - 7162319
Alignment:
Q  235 ggagtcagttctttgactcaagttggtttttggg 268  Q
    ||||||||||||||||||||||||||||||||||    
T  7162352 ggagtcagttctttgactcaagttggtttttggg 7162319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 219 - 258
Target Start/End: Complemental strand, 7195290 - 7195251
Alignment:
Q  219 ttttgattcgagatcaggagtcagttctttgactcaagtt 258  Q
    ||||||||||||||| ||||||||||||||| ||||||||    
T  7195290 ttttgattcgagatcgggagtcagttctttggctcaagtt 7195251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 218 - 269
Target Start/End: Original strand, 27713098 - 27713149
Alignment:
Q  218 tttttgattcgagatcaggagtcagttctttgactcaagttggtttttgggc 269  Q
    |||||||||||||||| ||| ||||||||||| |||||||| | ||||||||    
T  27713098 tttttgattcgagatcgggaatcagttctttggctcaagtttggttttgggc 27713149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 219 - 269
Target Start/End: Complemental strand, 35822 - 35773
Alignment:
Q  219 ttttgattcgagatcaggagtcagttctttgactcaagttggtttttgggc 269  Q
    ||||||||||||||| ||||||| |||||||||| ||||||||||||||||    
T  35822 ttttgattcgagatcgggagtca-ttctttgacttaagttggtttttgggc 35773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0343 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0343
Description:

Target: scaffold0343; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 235 - 269
Target Start/End: Original strand, 5751 - 5785
Alignment:
Q  235 ggagtcagttctttgactcaagttggtttttgggc 269  Q
    |||||||||||||||||||| ||||||||||||||    
T  5751 ggagtcagttctttgactcaggttggtttttgggc 5785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0200 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0200
Description:

Target: scaffold0200; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 219 - 269
Target Start/End: Original strand, 19413 - 19463
Alignment:
Q  219 ttttgattcgagatcaggagtcagttctttgactcaagttggtttttgggc 269  Q
    ||||||||||||||| | ||||||||||||| |||||||| | ||||||||    
T  19413 ttttgattcgagatcggaagtcagttctttggctcaagtttggttttgggc 19463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 268
Target Start/End: Complemental strand, 42189 - 42140
Alignment:
Q  219 ttttgattcgagatcaggagtcagttctttgactcaagttggtttttggg 268  Q
    ||||||||||||||| | ||||||||||||| |||||||| | |||||||    
T  42189 ttttgattcgagatcggaagtcagttctttggctcaagtttggttttggg 42140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 219 - 255
Target Start/End: Original strand, 36737 - 36773
Alignment:
Q  219 ttttgattcgagatcaggagtcagttctttgactcaa 255  Q
    ||||||||||||||| ||||||||||||||| |||||    
T  36737 ttttgattcgagatcgggagtcagttctttgtctcaa 36773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University