View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9651_low_29 (Length: 222)

Name: NF9651_low_29
Description: NF9651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9651_low_29
NF9651_low_29
[»] chr6 (6 HSPs)
chr6 (1-222)||(11296815-11297036)
chr6 (1-194)||(32725503-32725698)
chr6 (1-113)||(24893961-24894073)
chr6 (1-218)||(24990681-24990900)
chr6 (1-94)||(35233402-35233495)
chr6 (139-222)||(27852966-27853049)
[»] chr5 (4 HSPs)
chr5 (3-218)||(7817050-7817267)
chr5 (1-111)||(23620745-23620855)
chr5 (6-82)||(23944936-23945012)
chr5 (1-113)||(31814559-31814671)
[»] chr3 (10 HSPs)
chr3 (1-171)||(17718420-17718592)
chr3 (1-171)||(19019649-19019821)
chr3 (1-113)||(53608422-53608534)
chr3 (3-113)||(38647304-38647414)
chr3 (1-219)||(26432709-26432929)
chr3 (5-112)||(11897068-11897175)
chr3 (1-109)||(11889865-11889973)
chr3 (1-113)||(23424414-23424526)
chr3 (1-49)||(14623256-14623304)
chr3 (136-198)||(15473481-15473543)
[»] chr7 (2 HSPs)
chr7 (1-218)||(23207884-23208103)
chr7 (1-221)||(27781645-27781867)
[»] chr1 (6 HSPs)
chr1 (1-108)||(31325079-31325186)
chr1 (5-112)||(20284769-20284876)
chr1 (1-113)||(50451811-50451923)
chr1 (1-219)||(50236579-50236799)
chr1 (9-113)||(5193218-5193322)
chr1 (3-113)||(43298276-43298386)
[»] chr2 (8 HSPs)
chr2 (1-221)||(35135231-35135453)
chr2 (1-221)||(40328091-40328313)
chr2 (1-112)||(14653800-14653911)
chr2 (1-82)||(177412-177493)
chr2 (1-113)||(19265329-19265441)
chr2 (1-194)||(573105-573300)
chr2 (137-197)||(16322500-16322560)
chr2 (6-113)||(35063081-35063189)
[»] scaffold0036 (1 HSPs)
scaffold0036 (20-222)||(75840-76043)
[»] chr4 (3 HSPs)
chr4 (6-113)||(33803896-33804003)
chr4 (1-113)||(3881631-3881743)
chr4 (1-113)||(54477529-54477641)
[»] chr8 (4 HSPs)
chr8 (5-112)||(23132705-23132812)
chr8 (1-109)||(26973369-26973477)
chr8 (1-109)||(14759838-14759946)
chr8 (148-218)||(26587289-26587359)


Alignment Details
Target: chr6 (Bit Score: 202; Significance: 1e-110; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 11297036 - 11296815
Alignment:
Q  1 ctttcaagcttgacttggagaaagcttttgacaacgtcaattgggattttcttagttctttcctccatgattttggtttccccgacatcaccattatgct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11297036 ctttcaagcttgacttggagaaagcttttgacaacgtcaattgggattttcttagttctttcctccatgattttggtttccccgacatcaccattatgct 11296937  T
Q  101 catcatgcattgtctccatatccagctactatattttatggaacggaaacaaaatgccttccttcaagcctacccatgaccttagacaaggtgacccatt 200  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||    
T  11296936 catcatgcattgactccatatccagctactatattttatggaacggaaacaaaatgccttccttcaagcctacccatggccttagacaaggtgactcatt 11296837  T
Q  201 gtccccttatctcttcatcctt 222  Q
    ||||| ||||||| ||||||||    
T  11296836 gtccctttatctcgtcatcctt 11296815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 32725698 - 32725503
Alignment:
Q  1 ctttcaagcttgacttggagaaagcttttgacaacgtcaattgggattttcttagttctttcctccatgattttggtttccccgacatcaccattatgct 100  Q
    ||||||| |||||| |||||||||||||||| || ||||  ||||||||||||| ||||| ||||| ||| ||||| || || ||||||||||| | |||    
T  32725698 ctttcaaacttgacctggagaaagcttttgataatgtcagatgggattttcttaattcttgcctccttgagtttggatttccggacatcaccatcaagct 32725599  T
Q  101 catcatgcattgtctc-cat-atccagctactatattttatggaacggaaacaaaatgccttccttcaagcctacccatgaccttagacaaggtga 194  Q
     |||||||||||| || ||| |||||  | || ||||||||||||||| || |||||||| ||||| |||||| ||||||| || |||||||||||    
T  32725598 tatcatgcattgtgtcacatcatccacattctctattttatggaacggtaataaaatgccctcctttaagccttcccatgatctcagacaaggtga 32725503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 24894073 - 24893961
Alignment:
Q  1 ctttcaagcttgacttggagaaagcttttgacaacgtcaattgggattttcttagttctttcctccatgattttggtttccccgacatcaccattatgct 100  Q
    |||||||||| ||||||||||||||||| || || ||||  |||||||| |||| ||||| ||| || || |||||||| || ||||||||||| | |||    
T  24894073 ctttcaagctagacttggagaaagctttcgataatgtcagatgggatttccttaattcttgccttcaggaatttggttttccagacatcaccatcaagct 24893974  T
Q  101 catcatgcattgt 113  Q
    |||||||||||||    
T  24893973 catcatgcattgt 24893961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 24990900 - 24990681
Alignment:
Q  1 ctttcaagcttgacttggagaaagcttttgacaacgtcaattgggattttcttagttctttcctccatgattttggtttccccgacatcaccattatgct 100  Q
    |||||||||| |||||| ||||||| ||||| || ||||  |||||||| ||||  |||| ||| || ||||||||||| || ||||||||||| |  ||    
T  24990900 ctttcaagctagacttgaagaaagcgtttgataatgtcagatgggatttccttaagtcttaccttcacgattttggttttccagacatcaccatcaaact 24990801  T
Q  101 catcatgca--ttgtctccatatccagctactatattttatggaacggaaacaaaatgccttccttcaagcctacccatgaccttagacaaggtgaccca 198  Q
    |||||||||   |||| ||   ||||  |  | ||||||||||||||| |||||||||||  | |||||||| |||||||  || ||||||||||||||     
T  24990800 catcatgcactgtgtcacctcctccactttttctattttatggaacggtaacaaaatgccccctttcaagcccacccatggtctcagacaaggtgacccg 24990701  T
Q  199 ttgtccccttatctcttcat 218  Q
     | || |||||||| |||||    
T  24990700 ctctctccttatcttttcat 24990681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 35233402 - 35233495
Alignment:
Q  1 ctttcaagcttgacttggagaaagcttttgacaacgtcaattgggattttcttagttctttcctccatgattttggtttccccgacatcaccat 94  Q
    ||||||| |||||  | ||||||||||||||||| ||||| ||||| |||||||||  || ||| ||||| || ||||||||  ||||||||||    
T  35233402 ctttcaaacttgatctagagaaagcttttgacaatgtcaactgggagtttcttagtaattgccttcatgacttcggtttccctaacatcaccat 35233495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 139 - 222
Target Start/End: Complemental strand, 27853049 - 27852966
Alignment:
Q  139 tggaacggaaacaaaatgccttccttcaagcctacccatgaccttagacaaggtgacccattgtccccttatctcttcatcctt 222  Q
    ||||||||||||||||||||||| ||||||||| | ||||  || |||||||| ||||| || || |||||  | |||||||||    
T  27853049 tggaacggaaacaaaatgccttctttcaagccttctcatggtctaagacaaggggaccctttatctccttacttattcatcctt 27852966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 78; Significance: 2e-36; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 3 - 218
Target Start/End: Original strand, 7817050 - 7817267
Alignment:
Q  3 ttcaagcttgacttggagaaagcttttgacaacgtcaattgggattttcttagttctttcctccatgattttggtttccccgacatcaccattatgctca 102  Q
    ||||| |||||| |||| |||||||| |||||||||||||||||||| |||||||| | ||||||||||||||||||||| |||||||| || | |||||    
T  7817050 ttcaaacttgacctggaaaaagctttcgacaacgtcaattgggatttccttagttcgtgcctccatgattttggtttccctgacatcacaatcaagctca 7817149  T
Q  103 tcatgcattgtct-ccat-atccagctactatattttatggaacggaaacaaaatgccttccttcaagcctacccatgaccttagacaaggtgacccatt 200  Q
    ||||||||||| |  |||  |||| ||||| |||||||||||| || |||||| | ||||| ||||||||||| ||||  || ||||| |||||||| ||    
T  7817150 tcatgcattgtgtatcatcctccaactactctattttatggaatgggaacaaacttccttctttcaagcctactcatggtctcagacagggtgacccttt 7817249  T
Q  201 gtccccttatctcttcat 218  Q
     || ||||| || |||||    
T  7817250 atctccttaccttttcat 7817267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 23620855 - 23620745
Alignment:
Q  1 ctttcaagcttgacttggagaaagcttttgacaacgtcaattgggattttcttagttctttcctccatgattttggtttccccgacatcaccattatgct 100  Q
    ||||||| |||||| | ||||| |||||||| || ||||||||| |||||||||| || |  |||||||||||||| ||||| |||  ||| || | |||    
T  23620855 ctttcaaacttgaccttgagaatgcttttgataatgtcaattggaattttcttagatcatgtctccatgattttggcttcccagacgccacaataaagct 23620756  T
Q  101 catcatgcatt 111  Q
    |||||||||||    
T  23620755 catcatgcatt 23620745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 82
Target Start/End: Original strand, 23944936 - 23945012
Alignment:
Q  6 aagcttgacttggagaaagcttttgacaacgtcaattgggattttcttagttctttcctccatgattttggtttccc 82  Q
    ||||||||| | |||||| | ||||| ||||| |||||||||||||||| || || | | || ||||||||||||||    
T  23944936 aagcttgaccttgagaaatcctttgataacgttaattgggattttcttaatttttgcttgcaggattttggtttccc 23945012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 31814559 - 31814671
Alignment:
Q  1 ctttcaagcttgacttggagaaagcttttgacaacgtcaattgggattttcttagttctttcctccatgattttggtttccccgacatcaccattatgct 100  Q
    |||||||  |||| |||||||||||||| ||||| || ||||||||||| ||   || ||  ||||| || ||||| |||||  ||||||| || | |||    
T  31814559 ctttcaaaattgatttggagaaagctttcgacaatgttaattgggatttcctccatttttgtctccaagactttggcttcccatacatcactatcaagct 31814658  T
Q  101 catcatgcattgt 113  Q
    |||||||||||||    
T  31814659 catcatgcattgt 31814671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 62; Significance: 6e-27; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 171
Target Start/End: Complemental strand, 17718592 - 17718420
Alignment:
Q  1 ctttcaagcttgacttggagaaagcttttgacaacgtcaattgggattttcttagttctttcctccatgattttggtttccccgacatcaccattatgct 100  Q
    |||||||||| ||| | |||||||| ||||| || |||||||||||||||||||  ||||  || || |||||||||||||| ||| ||||||| | |||    
T  17718592 ctttcaagctagaccttgagaaagcctttgataatgtcaattgggattttcttaactcttgtctgcaggattttggtttcccggacgtcaccatcaagct 17718493  T
Q  101 catcatgcat--tgtctccatatccagctactatattttatggaacggaaacaaaatgccttccttcaagcct 171  Q
    ||||||||||  ||| |||  ||||| || || |||||| ||||| ||||||||||||||| |||||||||||    
T  17718492 catcatgcattgtgtttcctcatccaccttctctattttgtggaatggaaacaaaatgcctcccttcaagcct 17718420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 171
Target Start/End: Complemental strand, 19019821 - 19019649
Alignment:
Q  1 ctttcaagcttgacttggagaaagcttttgacaacgtcaattgggattttcttagttctttcctccatgattttggtttccccgacatcaccattatgct 100  Q
    |||||||||| ||| | |||||||| ||||| || |||||||||||||||||||  ||||  || || |||||||||||||| ||| ||||||| | |||    
T  19019821 ctttcaagctagaccttgagaaagcctttgataatgtcaattgggattttcttaactcttgtctgcaggattttggtttcccggacgtcaccatcaagct 19019722  T
Q  101 catcatgcat--tgtctccatatccagctactatattttatggaacggaaacaaaatgccttccttcaagcct 171  Q
    ||||||||||  ||| |||  ||||| || || |||||| ||||| ||||||||||||||| |||||||||||    
T  19019721 catcatgcattgtgtttcctcatccaccttctctattttgtggaatggaaacaaaatgcctcccttcaagcct 19019649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 53608534 - 53608422
Alignment:
Q  1 ctttcaagcttgacttggagaaagcttttgacaacgtcaattgggattttcttagttctttcctccatgattttggtttccccgacatcaccattatgct 100  Q
    |||||||||| ||  | |||||||||||||| || ||||||||||||||||||| || || ||| || |||||||||||||| ||||||||||| | |||    
T  53608534 ctttcaagctcgatcttgagaaagcttttgataatgtcaattgggattttcttaatttttgcctacaggattttggtttcccagacatcaccatcaagct 53608435  T
Q  101 catcatgcattgt 113  Q
    |||||||||||||    
T  53608434 catcatgcattgt 53608422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 3 - 113
Target Start/End: Complemental strand, 38647414 - 38647304
Alignment:
Q  3 ttcaagcttgacttggagaaagcttttgacaacgtcaattgggattttcttagttctttcctccatgattttggtttccccgacatcaccattatgctca 102  Q
    ||||| |||||| |||| ||||||||||| || ||||| ||||| || |||| ||||| ||| |||||||||||||| || ||||||||||| | |||||    
T  38647414 ttcaaacttgacctggaaaaagcttttgataatgtcaactgggacttccttaattcttgcctgcatgattttggttttccagacatcaccatcaagctca 38647315  T
Q  103 tcatgcattgt 113  Q
    |||||||||||    
T  38647314 tcatgcattgt 38647304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 26432929 - 26432709
Alignment:
Q  1 ctttcaagcttgacttggagaaagcttttgacaacgtcaattgggattttcttagttctttcctccatgattttggtttccccgacatcaccattatgct 100  Q
    |||||||||||||  | ||||||||||||||||||||||| ||||| ||||| ||    | ||||||||||||||| || || ||||||||||| |  ||    
T  26432929 ctttcaagcttgatctagagaaagcttttgacaacgtcaactgggaatttctaagcaactgcctccatgattttgggtttccagacatcaccatcaaact 26432830  T
Q  101 catcatgcat--tgtctccatatccagctactatattttatggaacggaaacaaaatgccttccttcaagcctacccatgaccttagacaaggtgaccca 198  Q
    ||||||||||  ||||||   ||| | ||||| |||  | ||||| || |||||  |||| || ||||| ||| | ||||  ||  |||||||||| |||    
T  26432829 catcatgcattgtgtctcttcatcaaactactctatactttggaatgggaacaagttgccgtctttcaaaccttctcatggtctccgacaaggtgatcca 26432730  T
Q  199 ttgtccccttatctcttcatc 219  Q
    |||||||||||||||||||||    
T  26432729 ttgtccccttatctcttcatc 26432709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 5 - 112
Target Start/End: Original strand, 11897068 - 11897175
Alignment:
Q  5 caagcttgacttggagaaagcttttgacaacgtcaattgggattttcttagttctttcctccatgattttggtttccccgacatcaccattatgctcatc 104  Q
    |||||||||||||||||||||||||||||||||||| | |||||| || ||    | ||||||||||||||| || ||  |||||||||| | |||||||    
T  11897068 caagcttgacttggagaaagcttttgacaacgtcaactaggatttcctaagcaactgcctccatgattttggatttccgaacatcaccatcaagctcatc 11897167  T
Q  105 atgcattg 112  Q
    ||||||||    
T  11897168 atgcattg 11897175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 11889973 - 11889865
Alignment:
Q  1 ctttcaagcttgacttggagaaagcttttgacaacgtcaattgggattttcttagttctttcctccatgattttggtttccccgacatcaccattatgct 100  Q
    ||||||| |||||| | |||||||||||||| || ||||| ||||||||  | ||| ||| ||||||||| ||||||||||| || || ||||| | |||    
T  11889973 ctttcaaacttgacctagagaaagcttttgataatgtcaactgggatttcttaagtgcttgcctccatgactttggtttcccagatattaccataaagct 11889874  T
Q  101 catcatgca 109  Q
    |||||||||    
T  11889873 catcatgca 11889865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 23424414 - 23424526
Alignment:
Q  1 ctttcaagcttgacttggagaaagcttttgacaacgtcaattgggattttcttagttctttcctccatgattttggtttccccgacatcaccattatgct 100  Q
    |||||||||| |||||||||||||| || || || ||||  |||||||| |||| ||||| ||| || || |||||||| || ||||||||||| | |||    
T  23424414 ctttcaagctagacttggagaaagcattcgataatgtcagatgggatttccttaattcttgccttcaggaatttggttttccagacatcaccatcaagct 23424513  T
Q  101 catcatgcattgt 113  Q
    |||||| ||||||    
T  23424514 catcatacattgt 23424526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 14623304 - 14623256
Alignment:
Q  1 ctttcaagcttgacttggagaaagcttttgacaacgtcaattgggattt 49  Q
    ||||||| ||||| || ||||||||||||||||| ||||||||||||||    
T  14623304 ctttcaaacttgatttagagaaagcttttgacaaagtcaattgggattt 14623256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 198
Target Start/End: Complemental strand, 15473543 - 15473481
Alignment:
Q  136 ttatggaacggaaacaaaatgccttccttcaagcctacccatgaccttagacaaggtgaccca 198  Q
    |||||||| ||||||||||||||| | |||||||| || |||| |||  ||||||||||||||    
T  15473543 ttatggaatggaaacaaaatgcctcctttcaagcccactcatggcctccgacaaggtgaccca 15473481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 61; Significance: 2e-26; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 23208103 - 23207884
Alignment:
Q  1 ctttcaagcttgacttggagaaagcttttgacaacgtcaattgggattttcttagttctttcctccatgattttggtttccccgacatcaccattatgct 100  Q
    |||||||||| ||||||||||||||||| || || ||||  |||||||| |||| ||||| |||||| ||||||||||| || || || ||||| |  ||    
T  23208103 ctttcaagctagacttggagaaagctttcgataatgtcagatgggatttccttaattcttgcctccaggattttggttttccagatattaccatcaaact 23208004  T
Q  101 catcatgcatt--gtctccatatccagctactatattttatggaacggaaacaaaatgccttccttcaagcctacccatgaccttagacaaggtgaccca 198  Q
    |||||||||||  ||| ||   ||||  | ||  |||||||||||||| |||||||||||  | |||||||| || ||||  ||||||||||||||||||    
T  23208003 catcatgcattgcgtcacctcctccacattctcaattttatggaacggtaacaaaatgccccctttcaagcccacacatggtcttagacaaggtgaccca 23207904  T
Q  199 ttgtccccttatctcttcat 218  Q
     | || ||||||||||||||    
T  23207903 ctctctccttatctcttcat 23207884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 27781867 - 27781645
Alignment:
Q  1 ctttcaagcttgacttggagaaagcttttgacaacgtcaattgggattttcttagttctttcctccatgattttggtttccccgacatcaccattatgct 100  Q
    ||||||| |||||| | |||||||||||||| || ||||||||||||||  | ||| ||| ||| ||||| ||||||||||| || || ||||| | |||    
T  27781867 ctttcaaacttgacctagagaaagcttttgataatgtcaattgggatttcttaagtgcttgccttcatgactttggtttcccagatattaccataaagct 27781768  T
Q  101 catcatgca--ttgtctccatatccagctactatattttatggaacggaaacaaaatgccttccttcaagcctacccatgaccttagacaaggtgaccca 198  Q
    |||||||||   |||| ||  |||||  | ||  ||| |||||||||| |||||||||||| | || ||||| || |||| ||| ||||||||||||||     
T  27781767 catcatgcactgtgtcacctcatccactttctccattctatggaacgggaacaaaatgcctccatttaagccaactcatggcctcagacaaggtgaccct 27781668  T
Q  199 ttgtccccttatctcttcatcct 221  Q
     | || ||||| |||||||||||    
T  27781667 ctttcaccttacctcttcatcct 27781645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 2e-23; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 31325186 - 31325079
Alignment:
Q  1 ctttcaagcttgacttggagaaagcttttgacaacgtcaattgggattttcttagttctttcctccatgattttggtttccccgacatcaccattatgct 100  Q
    ||||||| |||||| |||||||||||||||| || |||||||||||||| |||| ||||| |||||||||||| ||||| || |||||||| || | |||    
T  31325186 ctttcaaacttgacctggagaaagcttttgataatgtcaattgggatttccttaattcttgcctccatgatttcggttttccagacatcacaatcaagct 31325087  T
Q  101 catcatgc 108  Q
    ||||||||    
T  31325086 catcatgc 31325079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 5 - 112
Target Start/End: Original strand, 20284769 - 20284876
Alignment:
Q  5 caagcttgacttggagaaagcttttgacaacgtcaattgggattttcttagttctttcctccatgattttggtttccccgacatcaccattatgctcatc 104  Q
    |||||||||||||||||||||||| ||||||||||| ||||||||||| ||    | ||||||||||||||| || ||  |||||||||| | |||||||    
T  20284769 caagcttgacttggagaaagctttcgacaacgtcaactgggattttctaagcaactgcctccatgattttggatttccgaacatcaccatcaagctcatc 20284868  T
Q  105 atgcattg 112  Q
    ||||||||    
T  20284869 atgcattg 20284876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 50451811 - 50451923
Alignment:
Q  1 ctttcaagcttgacttggagaaagcttttgacaacgtcaattgggattttcttagttctttcctccatgattttggtttccccgacatcaccattatgct 100  Q
    |||||||||| || ||||| ||||| ||||| || ||||| ||||||||||||| ||||| ||| ||||| |||||||| || ||||||||||| |  ||    
T  50451811 ctttcaagctcgatttggaaaaagcatttgataatgtcaaatgggattttcttaattcttgccttcatgagtttggttttccggacatcaccatcaaact 50451910  T
Q  101 catcatgcattgt 113  Q
     ||||||||||||    
T  50451911 tatcatgcattgt 50451923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 50236799 - 50236579
Alignment:
Q  1 ctttcaagcttgacttggagaaagcttttgacaacgtcaattgggattttcttagttctttcctccatgattttggtttccccgacatcaccattatgct 100  Q
    |||| |||||||| ||||| || |||||||| || || |||| ||| || || | |||||  |||||||||||||| || || ||||||||||  |  ||    
T  50236799 cttttaagcttgatttggaaaaggcttttgataatgttaattaggacttcctcaattcttgtctccatgattttggatttccggacatcaccaccaaact 50236700  T
Q  101 catcatgcat--tgtctccatatccagctactatattttatggaacggaaacaaaatgccttccttcaagcctacccatgaccttagacaaggtgaccca 198  Q
    ||||||||||  |||||||  | ||| ||||| ||| ||||||||||| ||||| |||||  | ||||||||||| |||| ||| ||| ||||||| ||     
T  50236699 catcatgcattgtgtctcctcacccacctactctatcttatggaacgggaacaagatgccccctttcaagcctactcatggcctcagataaggtgatccg 50236600  T
Q  199 ttgtccccttatctcttcatc 219  Q
     | |||||||| || ||||||    
T  50236599 ctttccccttaccttttcatc 50236579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 9 - 113
Target Start/End: Complemental strand, 5193322 - 5193218
Alignment:
Q  9 cttgacttggagaaagcttttgacaacgtcaattgggattttcttagttctttcctccatgattttggtttccccgacatcaccattatgctcatcatgc 108  Q
    |||||| |||||||||||||||| || ||||  || |||||||||| ||||| ||||| ||||||||| ||  |  |||||||||| | ||| |||||||    
T  5193322 cttgacctggagaaagcttttgataatgtcagatgagattttcttaattcttgcctccttgattttggatttacgaacatcaccatcaagcttatcatgc 5193223  T
Q  109 attgt 113  Q
    |||||    
T  5193222 attgt 5193218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 3 - 113
Target Start/End: Original strand, 43298276 - 43298386
Alignment:
Q  3 ttcaagcttgacttggagaaagcttttgacaacgtcaattgggattttcttagttctttcctccatgattttggtttccccgacatcaccattatgctca 102  Q
    ||||| |||||| || ||||||||||| | || ||||| ||||||||||| | ||||| ||||  ||||||||| ||| |  |||||||||| | ||| |    
T  43298276 ttcaaacttgacctgaagaaagcttttaataatgtcaaatgggattttctaaattcttgcctcattgattttggattctcgaacatcaccatgaagctta 43298375  T
Q  103 tcatgcattgt 113  Q
    |||||||||||    
T  43298376 tcatgcattgt 43298386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 6e-21; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 35135453 - 35135231
Alignment:
Q  1 ctttcaagcttgacttggagaaagcttttgacaacgtcaattgggattttcttagttctttcctccatgattttggtttccccgacatcaccattatgct 100  Q
    ||||||||||||| || ||||||||||||||||||||||| ||||| || ||| |   || |||||| ||||| || ||||| ||||| ||||| |  ||    
T  35135453 ctttcaagcttgatttagagaaagcttttgacaacgtcaactgggacttccttcgcatttgcctccaggatttcggcttcccagacattaccatcaaact 35135354  T
Q  101 catcatgcattgtct--ccatatccagctactatattttatggaacggaaacaaaatgccttccttcaagcctacccatgaccttagacaaggtgaccca 198  Q
    ||||||||||||| |  ||  | | |||||||  ||||||||||| ||||||||  |  || | ||||||||||| ||||  ||| | |||||||||||     
T  35135353 catcatgcattgtgttacctcaccaagctactcaattttatggaatggaaacaagctctctcctttcaagcctactcatggacttcgtcaaggtgacccg 35135254  T
Q  199 ttgtccccttatctcttcatcct 221  Q
    ||||| |||||||| ||||||||    
T  35135253 ttgtctccttatcttttcatcct 35135231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 40328091 - 40328313
Alignment:
Q  1 ctttcaagcttgacttggagaaagcttttgacaacgtcaattgggattttcttagttctttcctccatgattttggtttccccgacatcaccattatgct 100  Q
    ||||||||||||| || ||||||||||||||||||||||| ||||| || ||| |   || |||||| ||||| || ||||| ||||| ||||| |  ||    
T  40328091 ctttcaagcttgatttagagaaagcttttgacaacgtcaactgggaattccttcgcatttgcctccaggatttcggcttcccagacattaccatcaaact 40328190  T
Q  101 catcatgcattgtct--ccatatccagctactatattttatggaacggaaacaaaatgccttccttcaagcctacccatgaccttagacaaggtgaccca 198  Q
    ||||||||||||| |  ||  | | |||||||  ||||||||||| ||||||||  |  || | ||||||||||| ||||  ||| | |||||||||||     
T  40328191 catcatgcattgtgttacctcaccgagctactcaattttatggaatggaaacaagctttctcctttcaagcctactcatggacttcgtcaaggtgacccg 40328290  T
Q  199 ttgtccccttatctcttcatcct 221  Q
    ||||| |||||||| ||||||||    
T  40328291 ttgtctccttatcttttcatcct 40328313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 14653911 - 14653800
Alignment:
Q  1 ctttcaagcttgacttggagaaagcttttgacaacgtcaattgggattttcttagttctttcctccatgattttggtttccccgacatcaccattatgct 100  Q
    ||||||||||||| ||||||||||| || ||||||||||| ||||| || || |     | ||||||||||||||| || ||  |||||||||| | |||    
T  14653911 ctttcaagcttgatttggagaaagcattcgacaacgtcaactgggaattcctaaacaactgcctccatgattttggatttcctaacatcaccatcaagct 14653812  T
Q  101 catcatgcattg 112  Q
    ||||||||||||    
T  14653811 catcatgcattg 14653800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 177412 - 177493
Alignment:
Q  1 ctttcaagcttgacttggagaaagcttttgacaacgtcaattgggattttcttagttctttcctccatgattttggtttccc 82  Q
    ||||||| |||||  | ||||||||||||||||| || |||||||| |||||||| || |  ||||| ||||||||||||||    
T  177412 ctttcaaacttgatcttgagaaagcttttgacaatgtgaattgggagtttcttagatcgtgtctccaagattttggtttccc 177493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 19265329 - 19265441
Alignment:
Q  1 ctttcaagcttgacttggagaaagcttttgacaacgtcaattgggattttcttagttctttcctccatgattttggtttccccgacatcaccattatgct 100  Q
    ||||||||||||| || ||||||||||||||||||||||| | ||| || ||| |   || |||||| ||||| || |||||  |||| ||||| |  ||    
T  19265329 ctttcaagcttgatttagagaaagcttttgacaacgtcaacttggacttccttcgcatttgcctccaggatttcggcttcccaaacattaccatcaaact 19265428  T
Q  101 catcatgcattgt 113  Q
    |||||||||||||    
T  19265429 catcatgcattgt 19265441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 194
Target Start/End: Original strand, 573105 - 573300
Alignment:
Q  1 ctttcaagcttgacttggagaaagcttttgacaacgtcaattgggattttcttagttctttcctccatgattttggtttccccgacatcaccattatgct 100  Q
    |||||||||| |||||||| ||||||||||  || ||||  |||||||| |||| ||| | ||| ||||| ||||| || || ||||||||||| |  ||    
T  573105 ctttcaagctcgacttggaaaaagcttttggtaatgtcagatgggatttccttaattcctgccttcatgagtttggatttccagacatcaccatcaaact 573204  T
Q  101 catcatgcattgtctc-catatccagc-tactatattttatggaacggaaacaaaatgccttccttcaagcctacccatgaccttagacaaggtga 194  Q
     |||||||||| | || |||  ||| | | || |||||||||||| || |||||||||| | | || || ||| |||||| ||| |||||||||||    
T  573205 tatcatgcattatgtcacatcaccaacgttctctattttatggaatggtaacaaaatgcatccttttaaaccttcccatggcctcagacaaggtga 573300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 197
Target Start/End: Original strand, 16322500 - 16322560
Alignment:
Q  137 tatggaacggaaacaaaatgccttccttcaagcctacccatgaccttagacaaggtgaccc 197  Q
    ||||||| |||||||| |||||| | |||||||| || |||| |||| |||||||||||||    
T  16322500 tatggaatggaaacaagatgcctcctttcaagcccactcatggccttcgacaaggtgaccc 16322560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 113
Target Start/End: Complemental strand, 35063189 - 35063081
Alignment:
Q  6 aagcttgacttggagaaagcttttgacaacgtcaattgggattttcttagttctttcctccatgattttggtttcccc-gacatcaccattatgctcatc 104  Q
    ||||||||  |||||||||||||||| || ||||| |||||||| || || |||  | | || ||||||||||||||| || |||| |||||  || |||    
T  35063189 aagcttgatctggagaaagcttttgataatgtcaactgggatttcctcaggtctaccgttcaagattttggtttcccctgatatcatcattaaacttatc 35063090  T
Q  105 atgcattgt 113  Q
    |||||||||    
T  35063089 atgcattgt 35063081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 20 - 222
Target Start/End: Original strand, 75840 - 76043
Alignment:
Q  20 gaaagcttttgacaacgtcaattgggattttcttagttctttcctccatgattttggtttccccgacatcaccattatgctcatcatgcattgtctccat 119  Q
    |||| |||||||||||||||| | ||||||||||||    | |||||||||||| || ||||  |||||||| || | ||||||  |||||||| |   |    
T  75840 gaaatcttttgacaacgtcaacttggattttcttagcatctgcctccatgatttcggcttcctagacatcactatcaagctcattttgcattgtatttct 75939  T
Q  120 --atccagctactatattttatggaacggaaacaaaatgccttccttcaagcctacccatgaccttagacaaggtgacccattgtccccttatctcttca 217  Q
      ||| |||||||  ||||||||||| |||| |||  ||||||||||||||||||| ||||  || |||||||||||||  |||||||||||||| ||||    
T  75940 tcatctagctactcaattttatggaatggaa-caagctgccttccttcaagcctactcatggtctcagacaaggtgaccagttgtccccttatcttttca 76038  T
Q  218 tcctt 222  Q
    |||||    
T  76039 tcctt 76043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 1e-18; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 6 - 113
Target Start/End: Original strand, 33803896 - 33804003
Alignment:
Q  6 aagcttgacttggagaaagcttttgacaacgtcaattgggattttcttagttctttcctccatgattttggtttccccgacatcaccattatgctcatca 105  Q
    ||||||||| | |||||||| ||||| || || |||||||||||||||| || || | | || |||||||||||||| ||||||||||| | ||||||||    
T  33803896 aagcttgaccttgagaaagcctttgataatgttaattgggattttcttaatttttgcttgcaggattttggtttcccagacatcaccatcaagctcatca 33803995  T
Q  106 tgcattgt 113  Q
    ||||||||    
T  33803996 tgcattgt 33804003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 3881631 - 3881743
Alignment:
Q  1 ctttcaagcttgacttggagaaagcttttgacaacgtcaattgggattttcttagttctttcctccatgattttggtttccccgacatcaccattatgct 100  Q
    |||||||||| || ||||| ||||| ||||| || ||||| ||||||||||||| ||||| ||| ||||| |||| ||| || | ||||||||| |  ||    
T  3881631 ctttcaagctcgatttggaaaaagcatttgataatgtcaaatgggattttcttaattcttgccttcatgagtttgattttccggccatcaccatcaaact 3881730  T
Q  101 catcatgcattgt 113  Q
     ||||||||||||    
T  3881731 tatcatgcattgt 3881743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 54477641 - 54477529
Alignment:
Q  1 ctttcaagcttgacttggagaaagcttttgacaacgtcaattgggattttcttagttctttcctccatgattttggtttccccgacatcaccattatgct 100  Q
    |||| |||||||| ||| | |||||||||||||| ||||||||||| || |||||    | ||| |||||||| |  ||||| ||||||||||| | |||    
T  54477641 cttttaagcttgatttgaaaaaagcttttgacaatgtcaattgggaattccttagcaactgccttcatgatttcgagttccctgacatcaccatcaagct 54477542  T
Q  101 catcatgcattgt 113  Q
    |||||||||||||    
T  54477541 catcatgcattgt 54477529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 3e-16; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 5 - 112
Target Start/End: Complemental strand, 23132812 - 23132705
Alignment:
Q  5 caagcttgacttggagaaagcttttgacaacgtcaattgggattttcttagttctttcctccatgattttggtttccccgacatcaccattatgctcatc 104  Q
    |||||||||||||||||||||||| ||||||||||| |||||||| || ||    | ||||||||||||||| || ||  |||||||||| | | |||||    
T  23132812 caagcttgacttggagaaagctttcgacaacgtcaactgggatttcctaagcaactgcctccatgattttggatttccgaacatcaccatcaagttcatc 23132713  T
Q  105 atgcattg 112  Q
    ||||||||    
T  23132712 atgcattg 23132705  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 26973369 - 26973477
Alignment:
Q  1 ctttcaagcttgacttggagaaagcttttgacaacgtcaattgggattttcttagttctttcctccatgattttggtttccccgacatcaccattatgct 100  Q
    ||||||| |||||| |||| |||||||||||||| || || ||||| || ||  ||||||  || ||||||||||| ||||||||||| || || | |||    
T  26973369 ctttcaaacttgacctggaaaaagcttttgacaaagtaaactgggaattcctgcgttcttgtcttcatgattttgggttccccgacataacaataaggct 26973468  T
Q  101 catcatgca 109  Q
    |||||||||    
T  26973469 catcatgca 26973477  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 14759838 - 14759946
Alignment:
Q  1 ctttcaagcttgacttggagaaagcttttgacaacgtcaattgggattttcttagttctttcctccatgattttggtttccccgacatcaccattatgct 100  Q
    |||||||  ||||| |||| |||||||||||||| || || ||||| || ||  ||||||  || ||||||||||| ||||||||||| || || | |||    
T  14759838 ctttcaaaattgacctggaaaaagcttttgacaaagtaaactgggaattcctgcgttcttgtcttcatgattttgggttccccgacataacaataaggct 14759937  T
Q  101 catcatgca 109  Q
    |||||||||    
T  14759938 catcatgca 14759946  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 218
Target Start/End: Original strand, 26587289 - 26587359
Alignment:
Q  148 aacaaaatgccttccttcaagcctacccatgaccttagacaaggtgacccattgtccccttatctcttcat 218  Q
    |||||| ||||  ||||||||||||| |||| |||  ||||||||||||||||||| || || ||||||||    
T  26587289 aacaaattgccccccttcaagcctactcatggcctccgacaaggtgacccattgtctccctacctcttcat 26587359  T

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