View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9651_low_3 (Length: 751)

Name: NF9651_low_3
Description: NF9651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9651_low_3
NF9651_low_3
[»] chr5 (4 HSPs)
chr5 (1-734)||(19213077-19213806)
chr5 (577-655)||(25904733-25904811)
chr5 (577-616)||(39528322-39528361)
chr5 (577-655)||(21825744-21825822)
[»] chr4 (1 HSPs)
chr4 (577-655)||(12189297-12189375)
[»] chr6 (3 HSPs)
chr6 (577-633)||(1786900-1786956)
chr6 (577-655)||(16477088-16477166)
chr6 (577-655)||(18860028-18860106)
[»] chr7 (1 HSPs)
chr7 (609-655)||(8874198-8874244)
[»] chr3 (2 HSPs)
chr3 (579-646)||(30729418-30729485)
chr3 (577-628)||(53162788-53162839)
[»] chr2 (27 HSPs)
chr2 (577-655)||(24627514-24627592)
chr2 (577-655)||(3348062-3348140)
chr2 (577-655)||(24621695-24621773)
chr2 (577-655)||(24622014-24622092)
chr2 (577-655)||(24622333-24622411)
chr2 (577-655)||(24622617-24622695)
chr2 (577-655)||(24622901-24622979)
chr2 (577-655)||(24623504-24623582)
chr2 (577-655)||(24623823-24623901)
chr2 (577-655)||(24624416-24624494)
chr2 (577-655)||(24624735-24624813)
chr2 (577-655)||(24625019-24625097)
chr2 (577-655)||(24625338-24625416)
chr2 (577-655)||(24626911-24626989)
chr2 (577-655)||(24631397-24631475)
chr2 (577-655)||(24631716-24631794)
chr2 (577-655)||(24632000-24632078)
chr2 (577-655)||(24632284-24632362)
chr2 (577-655)||(24632603-24632681)
chr2 (577-655)||(24632887-24632965)
chr2 (577-655)||(24633171-24633249)
chr2 (577-655)||(24633490-24633568)
chr2 (577-655)||(24633809-24633887)
chr2 (577-655)||(24634093-24634171)
chr2 (577-655)||(24634696-24634774)
chr2 (577-655)||(24638775-24638853)
chr2 (577-655)||(24639094-24639172)
[»] chr1 (2 HSPs)
chr1 (579-650)||(2557878-2557949)
chr1 (580-654)||(16462139-16462212)


Alignment Details
Target: chr5 (Bit Score: 620; Significance: 0; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 620; E-Value: 0
Query Start/End: Original strand, 1 - 734
Target Start/End: Complemental strand, 19213806 - 19213077
Alignment:
Q  1 tacacaccaagggcaggagcatgggttggggaagctggtggagcttataatagtggtggaaaagatgtgtcacacacttttgttaatggcttttggttag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19213806 tacacaccaagggcaggagcatgggttggggaagctggtggagcttataatagtggtggaaaagatgtgtcacacacttttgttaatggcttttggttag 19213707  T
Q  101 tctaatattccatcaacatgctaccatattattttcaaaattaattattaccatttacatgctaatatactttttatgaattaataactaggtacttgga 200  Q
    |||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19213706 tctaatattccatcaacatgctaccatattattttcaaaatta----ttaccatttacatgctaatatactttttatgaattaataactaggtacttgga 19213611  T
Q  201 ccaactaggcatgacagcaaccatgaaccataaggtttattgtagacaaactcttattggaggaaattatggtttgctaaacaccacatcttttattcct 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19213610 ccaactaggcatgacagcaaccatgaaccataaggtttattgtagacaaactcttattggaggaaattatggtttgctaaacaccacatcttttattcct 19213511  T
Q  301 aaccctgattattatgggtgggtccattacacacacaaaacatattaaagtgaattaaattaaattaatgtgtttttaatttttccttctaattagcatg 400  Q
    |||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  19213510 aaccctgattattatgggtgagtccattacacacacaaaacctattaaagtgatttaaattaaattaatgtgtttttaatttttccttctaattagcatg 19213411  T
Q  401 tcctttaatacagagctcttttgtttaatcgactaatgggacccaaagtgctctctatttctcatgaagcatctcattatttgcgtacatatgctcattg 500  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19213410 tcttttaatacagagctcttttgtttaatcgactaatgggacccaaagtgctctctatttctcatgaagcatctcattatttgcgtacatatgctcattg 19213311  T
Q  501 ttctaagaatggggtaagcttatgcatataaaaatttcatttttaataccttttcagttttaggnnnnnnnaggacaggtgcaacacaaagacttctcag 600  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| ||||       || ||||||| |||||||||||| |||||    
T  19213310 ttctaagaatggggtaagcttatgcatataaaaatttcatttttaatacttttttagttataggtttttttagaacaggtgtaacacaaagactcctcag 19213211  T
Q  601 aaggtcatccatcttaatactgctctcgtccaaacacatttaactgcagagttcttttcagttttagctttcatttgaatgaatctcactatttttatta 700  Q
    ||| ||| ||||||||||||||| ||||||||||||| ||||||||| |||||||||||||||||| |||| || |||||||||||||||||||||||||    
T  19213210 aagatcacccatcttaatactgccctcgtccaaacacgtttaactgcggagttcttttcagttttacctttgatatgaatgaatctcactatttttatta 19213111  T
Q  701 ttctattcagcctggtatcactgtgctgatcatc 734  Q
    ||| ||||||||||||||||||||||||||||||    
T  19213110 ttccattcagcctggtatcactgtgctgatcatc 19213077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 577 - 655
Target Start/End: Original strand, 25904733 - 25904811
Alignment:
Q  577 aggtgcaacacaaagacttctcagaaggtcatccatcttaatactgctctcgtccaaacacatttaactgcagagttct 655  Q
    ||||||||||||| |||||  || ||||||||||||||||||||| |||||||||||| ||  |||||||| |||||||    
T  25904733 aggtgcaacacaaggactttccaaaaggtcatccatcttaatactactctcgtccaaatacgcttaactgcggagttct 25904811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 577 - 616
Target Start/End: Complemental strand, 39528361 - 39528322
Alignment:
Q  577 aggtgcaacacaaagacttctcagaaggtcatccatctta 616  Q
    |||||||||||||||||||||||||| |||||||||||||    
T  39528361 aggtgcaacacaaagacttctcagaaagtcatccatctta 39528322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 577 - 655
Target Start/End: Complemental strand, 21825822 - 21825744
Alignment:
Q  577 aggtgcaacacaaagacttctcagaaggtcatccatcttaatactgctctcgtccaaacacatttaactgcagagttct 655  Q
    ||||||||||||| |||||| ||| |||||| ||||| || |||| |||||| |||| |||  || |||||||||||||    
T  21825822 aggtgcaacacaaggacttcccaggaggtcacccatcctagtactactctcgcccaagcacgcttgactgcagagttct 21825744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 577 - 655
Target Start/End: Original strand, 12189297 - 12189375
Alignment:
Q  577 aggtgcaacacaaagacttctcagaaggtcatccatcttaatactgctctcgtccaaacacatttaactgcagagttct 655  Q
    ||||||||||||| |||||| ||| |||||||||||| || |||| |||||| |||| |||| |||||||| |||||||    
T  12189297 aggtgcaacacaaggacttcccaggaggtcatccatcctagtactactctcgcccaagcacaattaactgcggagttct 12189375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.00000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 577 - 633
Target Start/End: Original strand, 1786900 - 1786956
Alignment:
Q  577 aggtgcaacacaaagacttctcagaaggtcatccatcttaatactgctctcgtccaa 633  Q
    |||||||||||||||||||  |||||||||| ||||| ||||||| |||||||||||    
T  1786900 aggtgcaacacaaagacttaccagaaggtcacccatcctaatactactctcgtccaa 1786956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 577 - 655
Target Start/End: Original strand, 16477088 - 16477166
Alignment:
Q  577 aggtgcaacacaaagacttctcagaaggtcatccatcttaatactgctctcgtccaaacacatttaactgcagagttct 655  Q
    ||||||||||||| |||||| ||| |||||| ||||| || |||| |||||| |||| |||  || |||||||||||||    
T  16477088 aggtgcaacacaaggacttcccaggaggtcacccatcctagtactactctcgcccaagcacgcttgactgcagagttct 16477166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 577 - 655
Target Start/End: Complemental strand, 18860106 - 18860028
Alignment:
Q  577 aggtgcaacacaaagacttctcagaaggtcatccatcttaatactgctctcgtccaaacacatttaactgcagagttct 655  Q
    ||||||||||||| |||||  ||| |||||| ||||| || |||| |||||| |||| |||  ||||||||||||||||    
T  18860106 aggtgcaacacaaggactttccaggaggtcacccatcctagtactactctcgcccaagcacgcttaactgcagagttct 18860028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 609 - 655
Target Start/End: Original strand, 8874198 - 8874244
Alignment:
Q  609 ccatcttaatactgctctcgtccaaacacatttaactgcagagttct 655  Q
    ||||||||||||| ||||| |||||||||| ||||||||||||||||    
T  8874198 ccatcttaatactactctcatccaaacacacttaactgcagagttct 8874244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 579 - 646
Target Start/End: Original strand, 30729418 - 30729485
Alignment:
Q  579 gtgcaacacaaagacttctcagaaggtcatccatcttaatactgctctcgtccaaacacatttaactg 646  Q
    ||||||||||| ||||| ||||||||||| ||||| |||| || ||||||| ||| ||| ||||||||    
T  30729418 gtgcaacacaatgacttttcagaaggtcacccatcctaatgctactctcgttcaagcacgtttaactg 30729485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 577 - 628
Target Start/End: Original strand, 53162788 - 53162839
Alignment:
Q  577 aggtgcaacacaaagacttctcagaaggtcatccatcttaatactgctctcg 628  Q
    ||||||||||||||||||| |||| ||||||| |||| ||||||| ||||||    
T  53162788 aggtgcaacacaaagacttttcaggaggtcattcatcataatactactctcg 53162839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 27)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 577 - 655
Target Start/End: Original strand, 24627514 - 24627592
Alignment:
Q  577 aggtgcaacacaaagacttctcagaaggtcatccatcttaatactgctctcgtccaaacacatttaactgcagagttct 655  Q
    ||||||||||||| |||||| ||| |||||| ||||| || |||| |||||| |||| |||  |||||||| |||||||    
T  24627514 aggtgcaacacaangacttcccaggaggtcacccatcctagtactactctcgcccaagcacgcttaactgcggagttct 24627592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 577 - 655
Target Start/End: Original strand, 3348062 - 3348140
Alignment:
Q  577 aggtgcaacacaaagacttctcagaaggtcatccatcttaatactgctctcgtccaaacacatttaactgcagagttct 655  Q
    ||||||||||||| ||||||  || |||||| ||||| || |||| ||||||||||| |||  |||||||| |||||||    
T  3348062 aggtgcaacacaaggacttcctaggaggtcacccatcctagtactactctcgtccaagcacgcttaactgcggagttct 3348140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 577 - 655
Target Start/End: Original strand, 24621695 - 24621773
Alignment:
Q  577 aggtgcaacacaaagacttctcagaaggtcatccatcttaatactgctctcgtccaaacacatttaactgcagagttct 655  Q
    ||||||||||||| |||||| ||| |||||| ||||| || |||| |||||| |||| |||  |||||||| |||||||    
T  24621695 aggtgcaacacaaggacttcccaggaggtcacccatcctagtactactctcgcccaagcacgcttaactgcggagttct 24621773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 577 - 655
Target Start/End: Original strand, 24622014 - 24622092
Alignment:
Q  577 aggtgcaacacaaagacttctcagaaggtcatccatcttaatactgctctcgtccaaacacatttaactgcagagttct 655  Q
    ||||||||||||| |||||| ||| |||||| ||||| || |||| |||||| |||| |||  |||||||| |||||||    
T  24622014 aggtgcaacacaaggacttcccaggaggtcacccatcctagtactactctcgcccaagcacgcttaactgcggagttct 24622092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 577 - 655
Target Start/End: Original strand, 24622333 - 24622411
Alignment:
Q  577 aggtgcaacacaaagacttctcagaaggtcatccatcttaatactgctctcgtccaaacacatttaactgcagagttct 655  Q
    ||||||||||||| |||||| ||| |||||| ||||| || |||| |||||| |||| |||  |||||||| |||||||    
T  24622333 aggtgcaacacaaggacttcccaggaggtcacccatcctagtactactctcgcccaagcacgcttaactgcggagttct 24622411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 577 - 655
Target Start/End: Original strand, 24622617 - 24622695
Alignment:
Q  577 aggtgcaacacaaagacttctcagaaggtcatccatcttaatactgctctcgtccaaacacatttaactgcagagttct 655  Q
    ||||||||||||| |||||| ||| |||||| ||||| || |||| |||||| |||| |||  |||||||| |||||||    
T  24622617 aggtgcaacacaaggacttcccaggaggtcacccatcctagtactactctcgcccaagcacgcttaactgcggagttct 24622695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 577 - 655
Target Start/End: Original strand, 24622901 - 24622979
Alignment:
Q  577 aggtgcaacacaaagacttctcagaaggtcatccatcttaatactgctctcgtccaaacacatttaactgcagagttct 655  Q
    ||||||||||||| |||||| ||| |||||| ||||| || |||| |||||| |||| |||  |||||||| |||||||    
T  24622901 aggtgcaacacaaggacttcccaggaggtcacccatcctagtactactctcgcccaagcacgcttaactgcggagttct 24622979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 577 - 655
Target Start/End: Original strand, 24623504 - 24623582
Alignment:
Q  577 aggtgcaacacaaagacttctcagaaggtcatccatcttaatactgctctcgtccaaacacatttaactgcagagttct 655  Q
    ||||||||||||| |||||| ||| |||||| ||||| || |||| |||||| |||| |||  |||||||| |||||||    
T  24623504 aggtgcaacacaaggacttcccaggaggtcacccatcctagtactactctcgcccaagcacgcttaactgcggagttct 24623582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 577 - 655
Target Start/End: Original strand, 24623823 - 24623901
Alignment:
Q  577 aggtgcaacacaaagacttctcagaaggtcatccatcttaatactgctctcgtccaaacacatttaactgcagagttct 655  Q
    ||||||||||||| |||||| ||| |||||| ||||| || |||| |||||| |||| |||  |||||||| |||||||    
T  24623823 aggtgcaacacaaggacttcccaggaggtcacccatcctagtactactctcgcccaagcacgcttaactgcggagttct 24623901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 577 - 655
Target Start/End: Original strand, 24624416 - 24624494
Alignment:
Q  577 aggtgcaacacaaagacttctcagaaggtcatccatcttaatactgctctcgtccaaacacatttaactgcagagttct 655  Q
    ||||||||||||| |||||| ||| |||||| ||||| || |||| |||||| |||| |||  |||||||| |||||||    
T  24624416 aggtgcaacacaaggacttcccaggaggtcacccatcctagtactactctcgcccaagcacgcttaactgcggagttct 24624494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 577 - 655
Target Start/End: Original strand, 24624735 - 24624813
Alignment:
Q  577 aggtgcaacacaaagacttctcagaaggtcatccatcttaatactgctctcgtccaaacacatttaactgcagagttct 655  Q
    ||||||||||||| |||||| ||| |||||| ||||| || |||| |||||| |||| |||  |||||||| |||||||    
T  24624735 aggtgcaacacaaggacttcccaggaggtcacccatcctagtactactctcgcccaagcacgcttaactgcggagttct 24624813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 577 - 655
Target Start/End: Original strand, 24625019 - 24625097
Alignment:
Q  577 aggtgcaacacaaagacttctcagaaggtcatccatcttaatactgctctcgtccaaacacatttaactgcagagttct 655  Q
    ||||||||||||| |||||| ||| |||||| ||||| || |||| |||||| |||| |||  |||||||| |||||||    
T  24625019 aggtgcaacacaaggacttcccaggaggtcacccatcctagtactactctcgcccaagcacgcttaactgcggagttct 24625097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 577 - 655
Target Start/End: Original strand, 24625338 - 24625416
Alignment:
Q  577 aggtgcaacacaaagacttctcagaaggtcatccatcttaatactgctctcgtccaaacacatttaactgcagagttct 655  Q
    ||||||||||||| |||||| ||| |||||| ||||| || |||| |||||| |||| |||  |||||||| |||||||    
T  24625338 aggtgcaacacaaggacttcccaggaggtcacccatcctagtactactctcgcccaagcacgcttaactgcggagttct 24625416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 577 - 655
Target Start/End: Original strand, 24626911 - 24626989
Alignment:
Q  577 aggtgcaacacaaagacttctcagaaggtcatccatcttaatactgctctcgtccaaacacatttaactgcagagttct 655  Q
    ||||||||||||| |||||| ||| |||||| ||||| || |||| |||||| |||| |||  |||||||| |||||||    
T  24626911 aggtgcaacacaaggacttcccaggaggtcacccatcctagtactactctcgcccaagcacgcttaactgcggagttct 24626989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 577 - 655
Target Start/End: Original strand, 24631397 - 24631475
Alignment:
Q  577 aggtgcaacacaaagacttctcagaaggtcatccatcttaatactgctctcgtccaaacacatttaactgcagagttct 655  Q
    ||||||||||||| |||||| ||| |||||| ||||| || |||| |||||| |||| |||  |||||||| |||||||    
T  24631397 aggtgcaacacaaggacttcccaggaggtcacccatcctagtactactctcgcccaagcacgcttaactgcggagttct 24631475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 577 - 655
Target Start/End: Original strand, 24631716 - 24631794
Alignment:
Q  577 aggtgcaacacaaagacttctcagaaggtcatccatcttaatactgctctcgtccaaacacatttaactgcagagttct 655  Q
    ||||||||||||| |||||| ||| |||||| ||||| || |||| |||||| |||| |||  |||||||| |||||||    
T  24631716 aggtgcaacacaaggacttcccaggaggtcacccatcctagtactactctcgcccaagcacgcttaactgcggagttct 24631794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 577 - 655
Target Start/End: Original strand, 24632000 - 24632078
Alignment:
Q  577 aggtgcaacacaaagacttctcagaaggtcatccatcttaatactgctctcgtccaaacacatttaactgcagagttct 655  Q
    ||||||||||||| |||||| ||| |||||| ||||| || |||| |||||| |||| |||  |||||||| |||||||    
T  24632000 aggtgcaacacaaggacttcccaggaggtcacccatcctagtactactctcgcccaagcacgcttaactgcggagttct 24632078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 577 - 655
Target Start/End: Original strand, 24632284 - 24632362
Alignment:
Q  577 aggtgcaacacaaagacttctcagaaggtcatccatcttaatactgctctcgtccaaacacatttaactgcagagttct 655  Q
    ||||||||||||| |||||| ||| |||||| ||||| || |||| |||||| |||| |||  |||||||| |||||||    
T  24632284 aggtgcaacacaaggacttcccaggaggtcacccatcctagtactactctcgcccaagcacgcttaactgcggagttct 24632362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 577 - 655
Target Start/End: Original strand, 24632603 - 24632681
Alignment:
Q  577 aggtgcaacacaaagacttctcagaaggtcatccatcttaatactgctctcgtccaaacacatttaactgcagagttct 655  Q
    ||||||||||||| |||||| ||| |||||| ||||| || |||| |||||| |||| |||  |||||||| |||||||    
T  24632603 aggtgcaacacaaggacttcccaggaggtcacccatcctagtactactctcgcccaagcacgcttaactgcggagttct 24632681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 577 - 655
Target Start/End: Original strand, 24632887 - 24632965
Alignment:
Q  577 aggtgcaacacaaagacttctcagaaggtcatccatcttaatactgctctcgtccaaacacatttaactgcagagttct 655  Q
    ||||||||||||| |||||| ||| |||||| ||||| || |||| |||||| |||| |||  |||||||| |||||||    
T  24632887 aggtgcaacacaaggacttcccaggaggtcacccatcctagtactactctcgcccaagcacgcttaactgcggagttct 24632965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 577 - 655
Target Start/End: Original strand, 24633171 - 24633249
Alignment:
Q  577 aggtgcaacacaaagacttctcagaaggtcatccatcttaatactgctctcgtccaaacacatttaactgcagagttct 655  Q
    ||||||||||||| |||||| ||| |||||| ||||| || |||| |||||| |||| |||  |||||||| |||||||    
T  24633171 aggtgcaacacaaggacttcccaggaggtcacccatcctagtactactctcgcccaagcacgcttaactgcggagttct 24633249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 577 - 655
Target Start/End: Original strand, 24633490 - 24633568
Alignment:
Q  577 aggtgcaacacaaagacttctcagaaggtcatccatcttaatactgctctcgtccaaacacatttaactgcagagttct 655  Q
    ||||||||||||| |||||| ||| |||||| ||||| || |||| |||||| |||| |||  |||||||| |||||||    
T  24633490 aggtgcaacacaaggacttcccaggaggtcacccatcctagtactactctcgcccaagcacgcttaactgcggagttct 24633568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 577 - 655
Target Start/End: Original strand, 24633809 - 24633887
Alignment:
Q  577 aggtgcaacacaaagacttctcagaaggtcatccatcttaatactgctctcgtccaaacacatttaactgcagagttct 655  Q
    ||||||||||||| |||||| ||| |||||| ||||| || |||| |||||| |||| |||  |||||||| |||||||    
T  24633809 aggtgcaacacaaggacttcccaggaggtcacccatcctagtactactctcgcccaagcacgcttaactgcggagttct 24633887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 577 - 655
Target Start/End: Original strand, 24634093 - 24634171
Alignment:
Q  577 aggtgcaacacaaagacttctcagaaggtcatccatcttaatactgctctcgtccaaacacatttaactgcagagttct 655  Q
    ||||||||||||| |||||| ||| |||||| ||||| || |||| |||||| |||| |||  |||||||| |||||||    
T  24634093 aggtgcaacacaaggacttcccaggaggtcacccatcctagtactactctcgcccaagcacgcttaactgcggagttct 24634171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 577 - 655
Target Start/End: Original strand, 24634696 - 24634774
Alignment:
Q  577 aggtgcaacacaaagacttctcagaaggtcatccatcttaatactgctctcgtccaaacacatttaactgcagagttct 655  Q
    ||||||||||||| |||||| ||| |||||| ||||| || |||| |||||| |||| |||  |||||||| |||||||    
T  24634696 aggtgcaacacaaggacttcccaggaggtcacccatcctagtactactctcgcccaagcacgcttaactgcggagttct 24634774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 577 - 655
Target Start/End: Original strand, 24638775 - 24638853
Alignment:
Q  577 aggtgcaacacaaagacttctcagaaggtcatccatcttaatactgctctcgtccaaacacatttaactgcagagttct 655  Q
    ||||||||||||| |||||| ||| |||||| ||||| || |||| |||||| |||| |||  |||||||| |||||||    
T  24638775 aggtgcaacacaaggacttcccaggaggtcacccatcctagtactactctcgcccaagcacgcttaactgcggagttct 24638853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 577 - 655
Target Start/End: Original strand, 24639094 - 24639172
Alignment:
Q  577 aggtgcaacacaaagacttctcagaaggtcatccatcttaatactgctctcgtccaaacacatttaactgcagagttct 655  Q
    ||||||||||||| |||||| ||| |||||| ||||| || |||| |||||| |||| |||  |||||||| |||||||    
T  24639094 aggtgcaacacaaggacttcccaggaggtcacccatcctagtactactctcgcccaagcacgcttaactgcggagttct 24639172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 579 - 650
Target Start/End: Complemental strand, 2557949 - 2557878
Alignment:
Q  579 gtgcaacacaaagacttctcagaaggtcatccatcttaatactgctctcgtccaaacacatttaactgcaga 650  Q
    ||||||||||| |||||| ||| |||||| ||||| || |||| |||||| ||||||||  |||||||||||    
T  2557949 gtgcaacacaaggacttcccaggaggtcacccatcctagtactactctcggccaaacacgcttaactgcaga 2557878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 580 - 654
Target Start/End: Original strand, 16462139 - 16462212
Alignment:
Q  580 tgcaacacaaagacttctcagaaggtcatccatcttaatactgctctcgtccaaacacatttaactgcagagttc 654  Q
    ||||||||||||||||| || ||||||| ||| | ||||||| |||| |||||||||| ||||| ||| ||||||    
T  16462139 tgcaacacaaagacttcccaaaaggtca-ccaacctaatactactctagtccaaacacgtttaattgctgagttc 16462212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University