View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9651_low_6 (Length: 458)
Name: NF9651_low_6
Description: NF9651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9651_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 356; Significance: 0; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 16 - 441
Target Start/End: Original strand, 31039299 - 31039727
Alignment:
| Q |
16 |
aggtgggagatatcaacctcatattatacacataacaataagcaaa-ccaaaaa-attggtgtgaacaataaaccacctattaacccacttggtgtcaaa |
113 |
Q |
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| T |
31039299 |
aggtaggagatatcaacctcatattatagacataacaataagcaaaaccaaaaagattggtgtgaacaataaaccacctattaatccacttggtgtcaaa |
31039398 |
T |
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| Q |
114 |
agatatattgtcatggttgataacaaaagtgaaagtgtattcaaaattgataaggtnnnnnnn-tcaccttcagaaataactgatttaccaacttcctta |
212 |
Q |
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| T |
31039399 |
agatatattgtcatggttgataacaaaagtgaaagtgtattcaaaattgataaggtaaaaaaaatcaccttcagaaataactgatttaccaacttcctta |
31039498 |
T |
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| Q |
213 |
gaaatcaaagaagtggtgtttttcgcattattattgtaatctcctgcattaccttgataaactccaccagggggactaagtgctgattgatacgtcgtag |
312 |
Q |
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| T |
31039499 |
gaattcaaagaagtgttgtttttcacattattattgtaatctcctgcattaccttgataaactccaccagggggactaagtgctgattgatacgtcgcag |
31039598 |
T |
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| Q |
313 |
ttgcaataagagtagcaactattagaaaagcgttgcgttgttcctccgatatatcttttctaatacgcagtatgtaaattaacattttatccaaaattgt |
412 |
Q |
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| T |
31039599 |
ttgcaataagagtagcaactattagaaaagcgttgcgttgttcctccgatatatcttttctaatacgcagtatgtaaattaacattttatccaaaattgt |
31039698 |
T |
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| Q |
413 |
gacatttgatcttaatttatcttcaagtt |
441 |
Q |
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| T |
31039699 |
gacatttgatcttaatttatcttcaagtt |
31039727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 16 - 168
Target Start/End: Original strand, 31073345 - 31073497
Alignment:
| Q |
16 |
aggtgggagatatcaacctcatattatacacataacaataagcaaaccaaaaaattggtgtgaacaataaaccacctattaacccacttggtgtcaaaag |
115 |
Q |
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| T |
31073345 |
aggtaggagatatcaacctcatattattgatataacaatatgcaaaccaaaacattggtgtgaacaataaaccacctattgacctacttggtgtcaaaag |
31073444 |
T |
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| Q |
116 |
atatattgtcatggttgataacaaaagtgaaagtgtattcaaaattgataagg |
168 |
Q |
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| T |
31073445 |
atttattttcatggttgataacaaaagtgaaactgtattaaaaattgacaagg |
31073497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 239 - 441
Target Start/End: Original strand, 31073586 - 31073782
Alignment:
| Q |
239 |
attattattgtaatctcctgcattaccttgataaactccaccagggggactaagtgctgattgatacgtcgtagttgcaataagagtagcaactattaga |
338 |
Q |
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| T |
31073586 |
attaatattgtgatctccagcattaccttgataaactccaccaggg------agtgttgtttgataagtagcagttgcaataagagtagcaactattaga |
31073679 |
T |
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| Q |
339 |
aaagcgttgcgttgttcctccgatatatcttttctaatacgcagtatgtaaattaacattttatccaaaattgtgacatttgatcttaatttatcttcaa |
438 |
Q |
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| T |
31073680 |
aaagaattgtgttcttcctttgatatatcttttctaatgtgtagtacataaattaatattttgtccataaatatgacatatgatcttaatttatcttcaa |
31073779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 267 - 333
Target Start/End: Complemental strand, 15329897 - 15329831
Alignment:
| Q |
267 |
tgataaactccaccagggggactaagtgctgattgatacgtcgtagttgcaataagagtagcaacta |
333 |
Q |
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| T |
15329897 |
tgataaactccaccagggggactcagagttgattcgtacatggtagttgcaataagagtcgcaacta |
15329831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 267 - 333
Target Start/End: Complemental strand, 15510266 - 15510200
Alignment:
| Q |
267 |
tgataaactccaccagggggactaagtgctgattgatacgtcgtagttgcaataagagtagcaacta |
333 |
Q |
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| T |
15510266 |
tgataaactccaccagggggactcagagttgattcgtacatggtagttgcaataagagtcgcaacta |
15510200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 258 - 304
Target Start/End: Complemental strand, 29552842 - 29552796
Alignment:
| Q |
258 |
gcattaccttgataaactccaccagggggactaagtgctgattgata |
304 |
Q |
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| T |
29552842 |
gcattaacctgataaactccaccagggggacttagtactgattgata |
29552796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 268 - 324
Target Start/End: Original strand, 26086457 - 26086513
Alignment:
| Q |
268 |
gataaactccaccagggggactaagtgctgattgatacgtcgtagttgcaataagag |
324 |
Q |
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| T |
26086457 |
gataaactccaccagggggagtcagagctgattcatacatggtagtcgcaataagag |
26086513 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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