View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9651_low_7 (Length: 448)
Name: NF9651_low_7
Description: NF9651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9651_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 402; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 14 - 432
Target Start/End: Original strand, 45474281 - 45474701
Alignment:
| Q |
14 |
aggggtaagcacaatcaatagctttgacaacttgacgatcgaaaaaccaatttccaatggcaaccgcaattggctgcatgataaaatatattacatcatc |
113 |
Q |
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| T |
45474281 |
aggggtaagcacaatcaatagctttgacaacttgacgatcgaaaaaccaatttccaatggcaaccgcaattggctgcatgataaaatatattacatcatc |
45474380 |
T |
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| Q |
114 |
agatgattattttctgagaacaataaatagaaagggagcgggatgaaacttgagtagtcttgccaattgccatgttctactagttaagagctttcatcat |
213 |
Q |
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| T |
45474381 |
agatgattattttctgagaacaataaatagaaagggagcggtatgaaacttgagtagtcttgccaattgccatgttctactagttaagagctttcatcat |
45474480 |
T |
|
| Q |
214 |
agcaaaggttttaccacaaataatttttagtctttatccatta--tctctctctcaaatagtatttccaattctccgaaatagaagaggaaaagagttaa |
311 |
Q |
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| T |
45474481 |
agcaaaggttttaccacaaatagtttttagtctttatccattatctctctctctcaaatagtatttccaattctccgaaatagaagaggaaaagagttaa |
45474580 |
T |
|
| Q |
312 |
acaaattaaacatgttgttccaactgtactattttagaagcatagaaatcttaattcacgcataccatgttgttaaggaggggagagtcatcagcaaacc |
411 |
Q |
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| T |
45474581 |
acaaattaaacatgttgttccaactgtactattttagaagcatagaaatcttaattcacgcataccatgttgttaaggaggggagagtcatcagcaaacc |
45474680 |
T |
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| Q |
412 |
atgtatcttgtctctccgatt |
432 |
Q |
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| T |
45474681 |
atgtatcttgtctctccgatt |
45474701 |
T |
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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 28 - 89
Target Start/End: Complemental strand, 38259924 - 38259863
Alignment:
| Q |
28 |
tcaatagctttgacaacttgacgatcgaaaaaccaatttccaatggcaaccgcaattggctg |
89 |
Q |
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| T |
38259924 |
tcaatagctttgacaacttctcgatcgaaataccagtctccaacagcaactgcaattggctg |
38259863 |
T |
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