View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9651_low_8 (Length: 447)
Name: NF9651_low_8
Description: NF9651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9651_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 13 - 429
Target Start/End: Original strand, 44609979 - 44610395
Alignment:
| Q |
13 |
gtttgatagaaaggcccttcacaaaacaagagatgttccaagagcacaccttttatttaacaaaatcattgaagagatgatactaacattttaacatggg |
112 |
Q |
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| T |
44609979 |
gtttgatagaaaggcccttcacaaaacaagagatgttccaagagcacaccttttatttaacaaaatcattgaagagatgatactaacattttaacatgag |
44610078 |
T |
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| Q |
113 |
atgagttatatcaattttgtacttagatgaattaaatatcagttttagtctctgctattgtaatctagagttcaattgtgaggtaagtgtttatctatat |
212 |
Q |
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| T |
44610079 |
atgagttatatcaattttgtacttagatgaattaaatatcagttttagtccctgctattgtaatctagagttcaattgtgaggtaagtatttatctatat |
44610178 |
T |
|
| Q |
213 |
tgtacctaaatatcgtacaacatgcattcgatttacatccgacgtaaagaaaatannnnnnncctcatttagatacaagttccnnnnnnngtatgaatct |
312 |
Q |
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| T |
44610179 |
tgtacctaaatatcgtacaacatgcactcgatttacatccgacgtacagaaaatatttttttcctcatttagatacaagttcctttctttgtatgcatct |
44610278 |
T |
|
| Q |
313 |
attgccaaaataaataatcttgaactaggtgatattttccagtcttttaaattaaacatgcaattaaggacattgttttcatgcttgtaatgtaagaaag |
412 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44610279 |
attgccaaaataaataatcttgaattaggtgatattttccagtcttttaaattaaacatgcaattaaggacattgttttcatgcttgtaatgtaagaaag |
44610378 |
T |
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| Q |
413 |
agacattatggtatgat |
429 |
Q |
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| T |
44610379 |
agacattatggtatgat |
44610395 |
T |
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