View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9652_high_2 (Length: 463)
Name: NF9652_high_2
Description: NF9652
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9652_high_2 |
 | |
|
| [»] scaffold0005 (1 HSPs) |
| | |
|
| [»] scaffold0009 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 18)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 19 - 282
Target Start/End: Original strand, 3915106 - 3915368
Alignment:
| Q |
19 |
accaacaacctttgaaaaacaaccggtaactataataattaaaacaacagcaaccacctttgccaccataacaatcgatgcaaccttaacgaatccacct |
118 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3915106 |
accaacaatctttgaaaaacaaccggtaactatgataattaaa-caacatcaaccacctttgccaccataacaatcgatgcaaccttaacgaatccacct |
3915204 |
T |
|
| Q |
119 |
ttgcaacaacaacaaccagtgcaacaacaaaatccaccttcatagcagcaacaccatcgatccacgtcgataaaccacaagataacagaatagtcgaacc |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
3915205 |
ttgcaacaacaacaaccagtgcaacaacaaaatccaccttcatagcagcaacaccatcgatccacgtcgataaaccaccagataacagaatagtcgaacc |
3915304 |
T |
|
| Q |
219 |
ggatgagaaggttctgatcgaacccaaccgttgaggatccactgacacctcctcacaccgccaa |
282 |
Q |
| |
|
|||||||||||||| |||||||||||||| |||||||| ||||||||||||||||||| |||| |
|
|
| T |
3915305 |
agatgagaaggttctaatcgaacccaaccgctgaggatcaactgacacctcctcacaccaccaa |
3915368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 188 - 435
Target Start/End: Original strand, 3926261 - 3926508
Alignment:
| Q |
188 |
ataaaccacaagataacagaatagtcgaaccggatgagaaggttctgatcgaacccaaccgttgaggatccactgacacctcctcacaccgccaaaaacg |
287 |
Q |
| |
|
||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| | |||||||||||||||||||||| | |
|
|
| T |
3926261 |
ataaaccaccagataacagagtagtcgaaccggatgagaaggttctgatcgaacccaaccattgaggatccaccgccacctcctcacaccgccaaaaatg |
3926360 |
T |
|
| Q |
288 |
tggcctacataccacctcacaccaccaacacctcatcaacatagatctggagcggaagaaataaccaccacacaaaaacaccaaacaatatgcattgcgt |
387 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| |
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|
| T |
3926361 |
tggtctacataccacctcacaccaccaacacctcatccacatagatctggagcggaagaaataaccaccacacaaaaacaccaaacaacctgcgttgcgt |
3926460 |
T |
|
| Q |
388 |
tttttctaacgggcaaactcaatattcgcagggaagaaacaccaaaca |
435 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3926461 |
tttttctaacaggcaaactcaatattcgcagggaagaaacaccaaaca |
3926508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 180; E-Value: 5e-97
Query Start/End: Original strand, 23 - 360
Target Start/End: Original strand, 14792028 - 14792367
Alignment:
| Q |
23 |
acaacctttgaaaaacaaccggtaactataataattaaaacaacagcaaccacctttgccaccataacaatcgatgcaaccttaacgaatccacctttgc |
122 |
Q |
| |
|
|||||||| |||||| ||||| ||||||||| ||| |||||||| |||||||||| ||||| | ||||||||||| |||||||||||||||| ||||| |
|
|
| T |
14792028 |
acaaccttggaaaaataaccgataactataacgattgaaacaacaacaaccaccttcgccacaacaacaatcgatgtcaccttaacgaatccacttttgc |
14792127 |
T |
|
| Q |
123 |
aacaacaacaaccagtgcaacaacaaaatccaccttcatagcagcaacaccatcgatccacgtcgataaaccacaagataacagaatagtcgaaccggat |
222 |
Q |
| |
|
|||||||||||| || ||||||||||||| |||||||| |||||||||||||||||||||| |||| || |||| |||||||||| |||||||||||||| |
|
|
| T |
14792128 |
aacaacaacaactagcgcaacaacaaaattcaccttcacagcagcaacaccatcgatccacatcgacaacccaccagataacagagtagtcgaaccggat |
14792227 |
T |
|
| Q |
223 |
gagaaggttctgatcgaacccaaccgttgaggatccactgacacctcctcacaccgccaaaaacgtggcctacat-accacctcacaccaccaacacctc |
321 |
Q |
| |
|
|||| ||| |||||||||||||||||||| || |||| |||||| ||||||||| ||||||||||||||||||| ||||||||||||||||| |||||| |
|
|
| T |
14792228 |
gagatagttatgatcgaacccaaccgttgaagacccaccgacaccgcctcacaccaccaaaaacgtggcctacatcaccacctcacaccaccatcacctc |
14792327 |
T |
|
| Q |
322 |
atcaacatagatctggagcggaa-gaaataaccaccacac |
360 |
Q |
| |
|
|| ||||||||||||| | ||| |||| ||||||||||| |
|
|
| T |
14792328 |
ctccacatagatctggatcagaaggaaacaaccaccacac |
14792367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 109 - 375
Target Start/End: Original strand, 12888123 - 12888391
Alignment:
| Q |
109 |
gaatccacctttgcaacaacaacaaccagtgcaacaacaaaatccaccttcatagcagcaacaccatcgatccacgtcgataaaccacaagataacagaa |
208 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||| |||||||| | |||||||||||||||||||| |||| ||||||| |||||||||| |
|
|
| T |
12888123 |
gaatccacctttgcaacaacaacaaccagcgcaacaacaaaattcaccttcacaacagcaacaccatcgatccacatcgacaaaccaccagataacagag |
12888222 |
T |
|
| Q |
209 |
tagtcgaaccggatgagaaggttctgatcgaacccaaccgttgaggatccactgacacctcctcacaccgccaaaaacgtggcctacat-accacctcac |
307 |
Q |
| |
|
|||||||| |||||||||||| |||||||||||||||||||||| || |||| |||||||||||||||| ||||||| ||| ||||||| ||||| |||| |
|
|
| T |
12888223 |
tagtcgaatcggatgagaaggatctgatcgaacccaaccgttgaagacccaccgacacctcctcacaccaccaaaaatgtgacctacatcaccacatcac |
12888322 |
T |
|
| Q |
308 |
accaccaacacctcatcaacatagatctggagcggaa-gaaataaccaccacacaaaaacaccaaacaa |
375 |
Q |
| |
|
||||||| |||||| || ||||||||||||| | ||| |||| ||||||| ||||||||||||| |||| |
|
|
| T |
12888323 |
accaccatcacctcctccacatagatctggatcagaaggaaacaaccaccgcacaaaaacaccagacaa |
12888391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 60 - 375
Target Start/End: Original strand, 18356923 - 18357240
Alignment:
| Q |
60 |
aaacaacagcaaccacctttgccaccataacaatcgatgcaaccttaacgaatccacctttgcaacaa-caacaaccagtgcaacaacaaaatccacctt |
158 |
Q |
| |
|
|||||||| |||||||||| ||| | | |||||| |||| ||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| |
|
|
| T |
18356923 |
aaacaacaacaaccaccttcgccgcaacaacaattgatgtcaccttaacgaatccacctttgcaacaaacaacaaccagcccaacaacaaaatccacctt |
18357022 |
T |
|
| Q |
159 |
catagcagcaacaccatcgatccacgtcgataaaccacaagataacagaatagtcgaaccggatgagaaggttctgatcgaacccaaccgttgaggatcc |
258 |
Q |
| |
|
|| ||||| ||| ||||||||||| |||| ||| ||| | |||||||| |||||||||||||||||||| ||||||||||||||||||||||| || || |
|
|
| T |
18357023 |
cacggcagccacatcatcgatccacatcgacaaaacactatataacagagtagtcgaaccggatgagaagattctgatcgaacccaaccgttgaagaccc |
18357122 |
T |
|
| Q |
259 |
actgacacctcctcacaccgccaaaaacgtggcctacat-accacctcacaccaccaacacctcatcaacatagatctggagcggaagaaataaccacca |
357 |
Q |
| |
|
|| | |||||||||||||| ||||||| ||||||||||| ||||||||||||||||| || ||| || ||||||| |||| |||||| || ||||| || |
|
|
| T |
18357123 |
accgtcacctcctcacaccaccaaaaatgtggcctacatcaccacctcacaccaccatcatctcctccgcatagatttggatcggaaggaaaaaccatca |
18357222 |
T |
|
| Q |
358 |
cacaaaaacaccaaacaa |
375 |
Q |
| |
|
||||||||||||| |||| |
|
|
| T |
18357223 |
cacaaaaacaccagacaa |
18357240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 60 - 375
Target Start/End: Complemental strand, 18431884 - 18431567
Alignment:
| Q |
60 |
aaacaacagcaaccacctttgccaccataacaatcgatgcaaccttaacgaatccacctttgcaacaa-caacaaccagtgcaacaacaaaatccacctt |
158 |
Q |
| |
|
|||||||| |||||||||| ||| | | |||||| |||| ||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| |
|
|
| T |
18431884 |
aaacaacaacaaccaccttcgccgcaacaacaattgatgtcaccttaacgaatccacctttgcaacaaacaacaaccagcccaacaacaaaatccacctt |
18431785 |
T |
|
| Q |
159 |
catagcagcaacaccatcgatccacgtcgataaaccacaagataacagaatagtcgaaccggatgagaaggttctgatcgaacccaaccgttgaggatcc |
258 |
Q |
| |
|
|| ||||| ||| ||||||||||| |||| ||| ||| | |||||||| |||||||||||||||||||| ||||||||||||||||||||||| || || |
|
|
| T |
18431784 |
cacggcagccacatcatcgatccacatcgacaaaacactatataacagagtagtcgaaccggatgagaagattctgatcgaacccaaccgttgaagaccc |
18431685 |
T |
|
| Q |
259 |
actgacacctcctcacaccgccaaaaacgtggcctacat-accacctcacaccaccaacacctcatcaacatagatctggagcggaagaaataaccacca |
357 |
Q |
| |
|
|| | |||||||||||||| ||||||| ||||||||||| ||||||||||||||||| || ||| || ||||||| |||| |||||| || ||||| || |
|
|
| T |
18431684 |
accgtcacctcctcacaccaccaaaaatgtggcctacatcaccacctcacaccaccatcatctcctccgcatagatttggatcggaaggaaaaaccatca |
18431585 |
T |
|
| Q |
358 |
cacaaaaacaccaaacaa |
375 |
Q |
| |
|
||||||||||||| |||| |
|
|
| T |
18431584 |
cacaaaaacaccagacaa |
18431567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 141; E-Value: 9e-74
Query Start/End: Original strand, 302 - 454
Target Start/End: Original strand, 3915355 - 3915507
Alignment:
| Q |
302 |
cctcacaccaccaacacctcatcaacatagatctggagcggaagaaataaccaccacacaaaaacaccaaacaatatgcattgcgttttttctaacgggc |
401 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | |
|
|
| T |
3915355 |
cctcacaccaccaacacctcatccacatagatctggagcggaagaaataaccaccacacaaaaacaccaaacaacatgcattgcgttttttctaacggac |
3915454 |
T |
|
| Q |
402 |
aaactcaatattcgcagggaagaaacaccaaacaccaaacaacctgcctttgc |
454 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3915455 |
aaactcaatattcgcagggaagaaacaccaaacaccaaacaacctgcctttgc |
3915507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 127 - 375
Target Start/End: Complemental strand, 51407490 - 51407242
Alignment:
| Q |
127 |
acaacaaccagtgcaacaacaaaatccaccttcatagcagcaacaccatcgatccacgtcgataaaccacaagataacagaatagtcgaaccggatgaga |
226 |
Q |
| |
|
||||||| |||||||||||| |||||||| |||| | |||||||||||||||||||| |||| |||||| ||||||||| ||||| ||| |||||||| |
|
|
| T |
51407490 |
acaacaatcagtgcaacaaccaaatccactttcacaacagcaacaccatcgatccacttcgacaaaccatcagataacag--tagtccaactggatgaga |
51407393 |
T |
|
| Q |
227 |
aggttctgatcgaacccaaccgttgaggatccactgacacctcctcacaccgccaaaaacgtggcctacat-accacctcacaccaccaacacctcatca |
325 |
Q |
| |
|
|||||||||||||||||||||||||| || |||||| |||||||||||||| ||||||| ||||||||||| ||||| ||||||||||| ||||||||| |
|
|
| T |
51407392 |
aggttctgatcgaacccaaccgttgaagacccactggcacctcctcacaccaccaaaaatgtggcctacatcaccacttcacaccaccatcacctcatcc |
51407293 |
T |
|
| Q |
326 |
acatagatctggagcggaa-gaaataaccaccacacaaaaacaccaaacaa |
375 |
Q |
| |
|
||| |||| |||| ||||| |||| | ||||||||| ||||||||| |||| |
|
|
| T |
51407292 |
acaaagatttggatcggaaggaaacatccaccacactaaaacaccagacaa |
51407242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 19 - 133
Target Start/End: Original strand, 3926135 - 3926249
Alignment:
| Q |
19 |
accaacaacctttgaaaaacaaccggtaactataataattaaaacaacagcaaccacctttgccaccataacaatcgatgcaaccttaacgaatccacct |
118 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| || ||||||||||||||||||| |||||||||||||||| |
|
|
| T |
3926135 |
accaacaaccttttaaaaacaaccggtaactataataattaaaacaacaacaaccaccttcgctaccataacaatcgatgcaatcttaacgaatccacct |
3926234 |
T |
|
| Q |
119 |
ttgcaacaacaacaa |
133 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
3926235 |
ttgcaacaacaacaa |
3926249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 19 - 314
Target Start/End: Original strand, 23533142 - 23533441
Alignment:
| Q |
19 |
accaacaacctttgaaaaacaaccggtaactataataattaaaacaacagcaaccacctttgccaccataacaatcgatgcaaccttaacgaatccacct |
118 |
Q |
| |
|
||||||||| |||| ||||||||||||||| ||| ||| |||||||| |||||||||| |||| | ||||||| ||| || ||||||||||||| | |
|
|
| T |
23533142 |
accaacaacttttgtaaaacaaccggtaacaatagcgattgaaacaacaacaaccaccttcaccacaacaacaatcaatgtcactttaacgaatccacgt |
23533241 |
T |
|
| Q |
119 |
ttgcaacaa---caacaaccagtgcaacaacaaaatccaccttcatagcagcaacaccatcgatccacgtcgataaaccacaagataacagaatagtcga |
215 |
Q |
| |
|
|| |||||| ||||||| || |||||||||| | | ||||||| | ||||||||||||| |||||| |||| ||||||| |||||||||| || | || |
|
|
| T |
23533242 |
tttcaacaataacaacaacaagcgcaacaacaagacctaccttcacaacagcaacaccatcaatccacatcgacaaaccaccagataacagagtacttga |
23533341 |
T |
|
| Q |
216 |
accggatgagaaggttctgatcgaacccaaccgttgaggatccactgacacctcctcacaccgccaaaaacgtggcctacat-accacctcacaccacca |
314 |
Q |
| |
|
||||| |||||||||| |||||||| |||||| || | | |||| ||||| |||||||| ||||||| ||||||||||| ||||||||||||||||| |
|
|
| T |
23533342 |
accgggtgagaaggttatgatcgaatccaaccattaaaaacccaccaacacccactcacaccaccaaaaatgtggcctacatcaccacctcacaccacca |
23533441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 19 - 375
Target Start/End: Original strand, 50589365 - 50589728
Alignment:
| Q |
19 |
accaacaacctttgaaaaacaaccggtaactataataattaaaacaacagcaaccacctttgccaccataacaatcgatgcaaccttaacgaatccacct |
118 |
Q |
| |
|
||||||||||||||||||||||||||| || |||| ||| |||||||| |||||||| |||| | |||||| |||| |||||||||||||||||| |
|
|
| T |
50589365 |
accaacaacctttgaaaaacaaccggtgacaataacgattgaaacaaca---accaccttcaccacaacaacaattgatgtcaccttaacgaatccacct |
50589461 |
T |
|
| Q |
119 |
ttgcaa------caacaacaaccagtgcaacaacaaaatccaccttcatag-cagcaacaccatcgatccacgtcgataaaccacaagataacagaatag |
211 |
Q |
| |
|
|||||| ||||||||||||| |||||| |||||||||||||| | || |||||||||| |||||| |||| |||| || |||||||||| || |
|
|
| T |
50589462 |
ttgcaataacaacaacaacaaccagcgcaacactaaaatccaccttcacaaacaacaacaccatcaatccacatcgacaaactaccagataacagagcag |
50589561 |
T |
|
| Q |
212 |
tcgaaccggatgagaaggttctgatcgaacccaaccgttgaggatccactgacacctcctcacaccgcc-aaaaacgtggcctacat-accacctcacac |
309 |
Q |
| |
|
||||||||| || ||||||| ||||||||||||||| | || || ||| |||||||||||||| || |||||| || |||| || |||||||||||| |
|
|
| T |
50589562 |
tcgaaccgggtgggaaggttttgatcgaacccaaccatcgaagacccatcagcacctcctcacaccaccaaaaaacatgacctatatcaccacctcacac |
50589661 |
T |
|
| Q |
310 |
caccaacacctcatcaacatagatctggagcggaa-gaaataaccaccacacaaaaacaccaaacaa |
375 |
Q |
| |
|
|||| |||||| | ||||| ||||||| | || |||| |||||||||||| ||||||||||||| |
|
|
| T |
50589662 |
aaccatcacctccttcacatatatctggatcaaaaggaaacaaccaccacacataaacaccaaacaa |
50589728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 19 - 196
Target Start/End: Complemental strand, 28149576 - 28149399
Alignment:
| Q |
19 |
accaacaacctttgaaaaacaaccggtaactataataattaaaacaacagcaaccacctttgccaccataacaatcgatgcaaccttaacgaatccacct |
118 |
Q |
| |
|
|||||||||||||||||||| |||| |||| |||| |||| |||||||| ||||| || ||||| | ||||||| ||| ||||||| ||||||| | |
|
|
| T |
28149576 |
accaacaacctttgaaaaaccaccgataacaataacaattgaaacaaca---accactttcgccacaacaacaatcaatgtcaccttaaagaatccatat |
28149480 |
T |
|
| Q |
119 |
ttgcaacaacaacaac---cagtgcaacaacaaaatccaccttcatagcagcaacaccatcgatccacgtcgataaaccac |
196 |
Q |
| |
|
|||||||||||||||| ||| |||||||||||||||| ||||||| || | |||||||||||||| |||| ||||||| |
|
|
| T |
28149479 |
ttgcaacaacaacaacatccagcgcaacaacaaaatccatcttcataacaacgacaccatcgatccaaatcgacaaaccac |
28149399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 107 - 197
Target Start/End: Complemental strand, 2180964 - 2180871
Alignment:
| Q |
107 |
acgaatccacctttgcaacaacaacaac---cagtgcaacaacaaaatccaccttcatagcagcaacaccatcgatccacgtcgataaaccaca |
197 |
Q |
| |
|
|||||||||||||||||||||||||||| || ||||||||||||||||||||| ||||||| ||||||||||||||||||| |||||||| |
|
|
| T |
2180964 |
acgaatccacctttgcaacaacaacaacaaccaactcaacaacaaaatccaccttcacagcagcaccaccatcgatccacgtcgacaaaccaca |
2180871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #14
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 60 - 160
Target Start/End: Complemental strand, 51407593 - 51407490
Alignment:
| Q |
60 |
aaacaacagcaaccacctttgccaccataacaatcgatgcaaccttaacgaatccacctttgcaaca---acaacaaccagtgcaacaacaaaatccacc |
156 |
Q |
| |
|
|||||||| |||||||||| ||||| | ||||||||||| || |||||||||||| ||||||||| ||||||||||||||||||||||||| |||| |
|
|
| T |
51407593 |
aaacaacaacaaccaccttcgccacaacaacaatcgatgtcacattaacgaatccagttttgcaacaacgacaacaaccagtgcaacaacaaaatacacc |
51407494 |
T |
|
| Q |
157 |
ttca |
160 |
Q |
| |
|
|||| |
|
|
| T |
51407493 |
ttca |
51407490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #15
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 60 - 160
Target Start/End: Original strand, 8817418 - 8817521
Alignment:
| Q |
60 |
aaacaacagcaaccacctttgccaccataacaatcgatgcaaccttaacgaatccacctttg---caacaacaacaaccagtgcaacaacaaaatccacc |
156 |
Q |
| |
|
|||||||| |||||||||| ||||| | || |||||||| || |||| ||||||||||||| |||||||||||||||| ||||||||||||| |||| |
|
|
| T |
8817418 |
aaacaacaacaaccaccttcgccacaacaaaaatcgatgtcacattaatgaatccacctttgcaacaacaacaacaaccagcgcaacaacaaaattcacc |
8817517 |
T |
|
| Q |
157 |
ttca |
160 |
Q |
| |
|
|||| |
|
|
| T |
8817518 |
ttca |
8817521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #16
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 127 - 206
Target Start/End: Original strand, 8817529 - 8817608
Alignment:
| Q |
127 |
acaacaaccagtgcaacaacaaaatccaccttcatagcagcaacaccatcgatccacgtcgataaaccacaagataacag |
206 |
Q |
| |
|
||||||| ||| ||||||| ||||||||||||| | |||||||||||||||||||| |||| ||||||| ||||||||| |
|
|
| T |
8817529 |
acaacaatcagcgcaacaatcaaatccaccttcacaacagcaacaccatcgatccacatcgacaaaccactagataacag |
8817608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #17
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 110 - 160
Target Start/End: Original strand, 19658657 - 19658707
Alignment:
| Q |
110 |
aatccacctttgcaacaacaacaaccagtgcaacaacaaaatccaccttca |
160 |
Q |
| |
|
|||||||||| |||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
19658657 |
aatccaccttcgcaacaacaacaaccatcgcaacaacaaaatccaccttca |
19658707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 22 - 76
Target Start/End: Complemental strand, 2181019 - 2180965
Alignment:
| Q |
22 |
aacaacctttgaaaaacaaccggtaactataataattaaaacaacagcaaccacc |
76 |
Q |
| |
|
|||||| ||||||||||||| ||||||||||| ||| |||||||| |||||||| |
|
|
| T |
2181019 |
aacaacttttgaaaaacaactggtaactataacgattgaaacaacaacaaccacc |
2180965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0005 (Bit Score: 180; Significance: 5e-97; HSPs: 1)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 180; E-Value: 5e-97
Query Start/End: Original strand, 23 - 360
Target Start/End: Complemental strand, 47703 - 47364
Alignment:
| Q |
23 |
acaacctttgaaaaacaaccggtaactataataattaaaacaacagcaaccacctttgccaccataacaatcgatgcaaccttaacgaatccacctttgc |
122 |
Q |
| |
|
|||||||| |||||| ||||| ||||||||| ||| |||||||| |||||||||| ||||| | ||||||||||| |||||||||||||||| ||||| |
|
|
| T |
47703 |
acaaccttggaaaaataaccgataactataacgattgaaacaacaacaaccaccttcgccacaacaacaatcgatgtcaccttaacgaatccacttttgc |
47604 |
T |
|
| Q |
123 |
aacaacaacaaccagtgcaacaacaaaatccaccttcatagcagcaacaccatcgatccacgtcgataaaccacaagataacagaatagtcgaaccggat |
222 |
Q |
| |
|
|||||||||||| || ||||||||||||| |||||||| |||||||||||||||||||||| |||| || |||| |||||||||| |||||||||||||| |
|
|
| T |
47603 |
aacaacaacaactagcgcaacaacaaaattcaccttcacagcagcaacaccatcgatccacatcgacaacccaccagataacagagtagtcgaaccggat |
47504 |
T |
|
| Q |
223 |
gagaaggttctgatcgaacccaaccgttgaggatccactgacacctcctcacaccgccaaaaacgtggcctacat-accacctcacaccaccaacacctc |
321 |
Q |
| |
|
|||| ||| |||||||||||||||||||| || |||| |||||| ||||||||| ||||||||||||||||||| ||||||||||||||||| |||||| |
|
|
| T |
47503 |
gagatagttatgatcgaacccaaccgttgaagacccaccgacaccgcctcacaccaccaaaaacgtggcctacatcaccacctcacaccaccatcacctc |
47404 |
T |
|
| Q |
322 |
atcaacatagatctggagcggaa-gaaataaccaccacac |
360 |
Q |
| |
|
|| ||||||||||||| | ||| |||| ||||||||||| |
|
|
| T |
47403 |
ctccacatagatctggatcagaaggaaacaaccaccacac |
47364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 158; Significance: 7e-84; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 158; E-Value: 7e-84
Query Start/End: Original strand, 19 - 348
Target Start/End: Original strand, 38258614 - 38258943
Alignment:
| Q |
19 |
accaacaacctttgaaaaacaaccggtaactataataattaaaacaacagcaaccacctttgccaccataacaatcgatgcaaccttaacgaatccacct |
118 |
Q |
| |
|
|||||||||||||||| |||||||| ||||||||| |||| |||||||| |||||||| ||||| | ||||||||||| |||||||| ||||||| | |
|
|
| T |
38258614 |
accaacaacctttgaagaacaaccgataactataacaattgaaacaaca---accaccttcgccacaacaacaatcgatgtcaccttaacaaatccacat |
38258710 |
T |
|
| Q |
119 |
ttgcaacaa---caacaaccagtgcaacaacaaaatccaccttcatagcagcaacaccatcgatccacgtcgataaaccacaagataacagaatagtcga |
215 |
Q |
| |
|
|| |||||| |||||||||| |||||||||||||||||||||||||| |||||||||||| |||| | || ||||||| |||||| || ||||||| |
|
|
| T |
38258711 |
ttacaacaataacaacaaccagcacaacaacaaaatccaccttcatagcatcaacaccatcgacccacatagacaaaccaccagataatagggtagtcga |
38258810 |
T |
|
| Q |
216 |
accggatgagaaggttctgatcgaacccaaccgttgaggatccactgacacctcctcacaccgccaaaaacgtggcctacat-accacctcacaccacca |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||| | ||||| ||| |||| ||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
38258811 |
accggatgagaaggttctgatcgaacccaaccgttgaggacccaccggcacct-ctcgcaccaccaaaaacgtggcctacatcaccacctcacaccacca |
38258909 |
T |
|
| Q |
315 |
acacctcatcaacatagatctggagcggaagaaa |
348 |
Q |
| |
|
| ||||| | ||||||||||||| ||||||||| |
|
|
| T |
38258910 |
aaacctccttcacatagatctggatcggaagaaa |
38258943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 19 - 375
Target Start/End: Complemental strand, 51057104 - 51056741
Alignment:
| Q |
19 |
accaacaacctttgaaaaacaaccggtaactataataattaaaacaacagcaaccacctttgccaccataacaatcgatgcaaccttaacgaatccacct |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| ||| |||||||| |||||||||| ||||| | ||||||||||| |||||||||||||||||| |
|
|
| T |
51057104 |
accaacaacctttgaaaaacaaccggtaacaataacgattgaaacaacaacaaccaccttcgccacaacaacaatcgatgtcaccttaacgaatccacct |
51057005 |
T |
|
| Q |
119 |
ttgcaacaacaacaac------cagtgcaacaacaaaatccaccttcatagcagcaacaccatcgatccacgtcgataaaccacaagataacagaatagt |
212 |
Q |
| |
|
||||||||||||||| ||| |||||||||||||||||||||| |||| |||| | ||||||||| |||| ||||||| |||||||| | || | |
|
|
| T |
51057004 |
ctgcaacaacaacaacaacaaccagcgcaacaacaaaatccaccttcactgcagtaacatcgtcgatccacatcgacaaaccaccagataacatagtaat |
51056905 |
T |
|
| Q |
213 |
cgaaccggatgagaaggttctgatcgaacccaaccgttgaggatccactgacacctcctcacaccgccaaaaacgtggcctacat-accacctcacacca |
311 |
Q |
| |
|
| || ||| |||||||||| ||||||||| |||||||||| || |||| ||||||||||||||| ||||||| ||||||||||| ||||||||||||| |
|
|
| T |
51056904 |
caaatcgggtgagaaggttatgatcgaactcaaccgttgaaga-ccaccaacacctcctcacaccaccaaaaatgtggcctacatcgccacctcacacca |
51056806 |
T |
|
| Q |
312 |
ccaacacctcatcaacatagatctggagcggaa-gaaataaccaccacacaaaaacaccaaacaa |
375 |
Q |
| |
|
||| |||||| || ||||||||||||| | ||| |||| |||||||| |||||||||||| |||| |
|
|
| T |
51056805 |
ccatcacctcctccacatagatctggatcagaaggaaacaaccaccatacaaaaacaccagacaa |
51056741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 19 - 370
Target Start/End: Original strand, 25498631 - 25498982
Alignment:
| Q |
19 |
accaacaacctttgaaaaacaaccggtaactataataattaaaacaacagcaaccacctttgccaccataacaatcgatgcaaccttaacgaatccacct |
118 |
Q |
| |
|
||||| ||||||||||||||||||||||| ||||| ||| ||||||| |||||||||| ||||| | |||||| |||| | |||||||||||||||| |
|
|
| T |
25498631 |
accaataacctttgaaaaacaaccggtaagtataacgattgaaacaacgacaaccaccttcgccacaaaaacaattgatgtcatcttaacgaatccacct |
25498730 |
T |
|
| Q |
119 |
ttgcaacaacaacaaccagtgcaacaacaaaatccaccttcatagcagcaacaccatcgatccacgtcgataaaccacaagataacagaatagtcgaacc |
218 |
Q |
| |
|
|| |||||||||||||| ||||||||||||||||||||| | |||||||| |||| |||||| |||| ||||||| |||||| ||| |||||||||| |
|
|
| T |
25498731 |
tt---acaacaacaaccagctcaacaacaaaatccaccttcacaacagcaacatcatcaatccacatcgacaaaccactagataatagagtagtcgaacc |
25498827 |
T |
|
| Q |
219 |
ggatgagaaggttctgatcgaacccaaccgttgaggatccactgacacctcctcacaccgc-caaaaacgtggcctacat-accacctcacaccaccaac |
316 |
Q |
| |
|
|||||| ||||||||||||||| ||||||||||| || |||| |||||||||||||||| | ||||| ||||||||||| ||||||| ||||||||| | |
|
|
| T |
25498828 |
ggatgaaaaggttctgatcgaaaccaaccgttgaagacccaccgacacctcctcacaccacaaaaaaatgtggcctacatcaccaccttacaccaccatc |
25498927 |
T |
|
| Q |
317 |
acctcatcaacatagatctggagcggaa-gaaataaccaccacacaaaaacacca |
370 |
Q |
| |
|
||||| || |||||||| |||| ||||| |||| ||||||||| || |||||||| |
|
|
| T |
25498928 |
acctcctccacatagatatggatcggaaggaaacaaccaccacgcataaacacca |
25498982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 22 - 331
Target Start/End: Original strand, 49358361 - 49358680
Alignment:
| Q |
22 |
aacaacctttgaaaaacaaccggtaactataataattaaaacaacagcaaccacctttgccaccataacaatcgatgcaaccttaacgaatccacctttg |
121 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| ||| ||||||| |||||||||| ||||| | |||||| |||| || ||||| || ||| |||| |
|
|
| T |
49358361 |
aacaacctttgaaaaacaaccgataactataaggattggaacaacaacaaccaccttcgccacaacaacaattgatgtcacgttaacaaaaccatttttg |
49358460 |
T |
|
| Q |
122 |
caac---------aacaacaaccagtgcaacaacaaaatccaccttcatagcagcaacaccatcgatccacgtcgataaaccacaagataacagaatagt |
212 |
Q |
| |
|
|||| ||||||||||| ||||||||||||||||||||| | ||||||||||||| ||||| |||| || |||| |||||||||| |||| |
|
|
| T |
49358461 |
caacaacaacaacaacaacaaccaacgcaacaacaaaatccaccttcgcatcagcaacaccatcaatccatatcgacaatccaccagataacagagtagt |
49358560 |
T |
|
| Q |
213 |
cgaaccggatgagaaggttctgatcgaacccaaccgttgaggatccactgacacctcctcacaccgccaaaaacgtggcctacat-accacctcacacca |
311 |
Q |
| |
|
|||| | || |||||||||||||||||||||||| |||| || |||| ||||||| || ||||| | ||||||||||||||||| |||||||||||||| |
|
|
| T |
49358561 |
cgaatcagacgagaaggttctgatcgaacccaactattgaagacccaccgacaccttctaacaccacaaaaaacgtggcctacatcaccacctcacacca |
49358660 |
T |
|
| Q |
312 |
ccaacacctcatcaacatag |
331 |
Q |
| |
|
||| ||||| || |||||| |
|
|
| T |
49358661 |
ccataacctcctccacatag |
49358680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 60 - 207
Target Start/End: Complemental strand, 17113925 - 17113768
Alignment:
| Q |
60 |
aaacaacagcaaccacctttgccaccataacaatcgatgcaaccttaacgaatccacctttgcaacaacaacaac------cagtgcaacaacaaaatcc |
153 |
Q |
| |
|
|||||||| ||||| || |||||| | ||||||||||| || ||||||||| ||||||||||||||||||||| ||| ||||||||||||||| |
|
|
| T |
17113925 |
aaacaacaataaccatctctgccacaacaacaatcgatgtcactttaacgaattcacctttgcaacaacaacaacaacaaccagcgcaacaacaaaatcc |
17113826 |
T |
|
| Q |
154 |
accttcatagcagcaacaccatc----gatccacgtcgataaaccacaagataacaga |
207 |
Q |
| |
|
|| |||| ||||||||||||||| ||||||| |||| ||||||| |||||||||| |
|
|
| T |
17113825 |
actttcacagcagcaacaccatcgatcgatccacatcgacaaaccaccagataacaga |
17113768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 247 - 321
Target Start/End: Complemental strand, 17113763 - 17113688
Alignment:
| Q |
247 |
cgttgaggatccactgacacctcctcacaccgccaaaaacgtggcctacat-accacctcacaccaccaacacctc |
321 |
Q |
| |
|
|||||| ||||||| |||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||| |
|
|
| T |
17113763 |
cgttgaagatccaccgacacctcctcacaccataaaaaacgtggcctacatcaccacctcacaccaccatcacctc |
17113688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 152; Significance: 3e-80; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 19 - 370
Target Start/End: Original strand, 22696337 - 22696687
Alignment:
| Q |
19 |
accaacaacctttgaaaaacaaccggtaactataataattaaaacaacagcaaccacctttgccaccataacaatcgatgcaaccttaacgaatccacct |
118 |
Q |
| |
|
||||| |||||||||||| ||||| |||| ||||| ||| ||||||| |||||||||| ||||| | |||||| |||| | |||||||||||||| | |
|
|
| T |
22696337 |
accaataacctttgaaaaccaacctgtaagtataacgattgaaacaacgacaaccaccttcgccacaaaaacaattgatgtcatcttaacgaatccactt |
22696436 |
T |
|
| Q |
119 |
ttgcaacaacaacaaccagtgcaacaacaaaatccaccttcatagcagcaacaccatcgatccacgtcgataaaccacaagataacagaatagtcgaacc |
218 |
Q |
| |
|
||| |||| |||||||| ||||||||||||||||||||| ||||||||||||||||||||| |||| ||||||| |||||| ||| |||||||||| |
|
|
| T |
22696437 |
ttgtaaca---acaaccagctcaacaacaaaatccaccttcacagcagcaacaccatcgatccatatcgacaaaccaccagataatagagtagtcgaacc |
22696533 |
T |
|
| Q |
219 |
ggatgagaaggttctgatcgaacccaaccgttgaggatccactgacacctcctcacaccgccaaaaacgtggcctacat-accacctcacaccaccaaca |
317 |
Q |
| |
|
|||||| |||||| |||||||||||||||||||| || |||| |||||||||||||| ||||||||||||||||||| ||||||| |||||||| || |
|
|
| T |
22696534 |
ggatgaaaaggttatgatcgaacccaaccgttgaagacccaccagcacctcctcacaccaccaaaaacgtggcctacatcaccaccttgcaccaccatca |
22696633 |
T |
|
| Q |
318 |
cctcatcaacatagatctggagcggaa-gaaataaccaccacacaaaaacacca |
370 |
Q |
| |
|
|||| || ||||||||||||| ||||| |||| |||||||||||| |||||||| |
|
|
| T |
22696634 |
cctcctccacatagatctggatcggaaggaaacaaccaccacacataaacacca |
22696687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 107 - 367
Target Start/End: Complemental strand, 34503197 - 34502932
Alignment:
| Q |
107 |
acgaatccacctttgca---acaacaacaaccagtgcaacaacaaaatccaccttcatagcagcaacaccatcgatccacgtcgataaaccacaagataa |
203 |
Q |
| |
|
||||||||||||||||| ||||||||||| || |||||||||||| ||||||||| ||| |||||||||||||||||| || ||||||| |||||| |
|
|
| T |
34503197 |
acgaatccacctttgcagtaacaacaacaacaagcgcaacaacaaaacccaccttcacagctgcaacaccatcgatccacatcagcaaaccaccagataa |
34503098 |
T |
|
| Q |
204 |
cagaatagtcgaaccggatgagaaggttctgatcgaacccaaccgttgaggatccactgacacctcctcacaccgccaaaaacgtggcctacat-accac |
302 |
Q |
| |
|
|||| ||||||||| || | |||||||||| |||||| ||||||||||| || |||| ||||| |||||| ||| ||||||||||| ||||||| |||| |
|
|
| T |
34503097 |
cagagtagtcgaacaggcttagaaggttcttatcgaaaccaaccgttgaagacccaccgacacttcctcataccaccaaaaacgtgacctacatctccac |
34502998 |
T |
|
| Q |
303 |
ctcacaccaccaacacctcatcaacatagatctggagcggaa-gaaataaccaccacacaaaaaca |
367 |
Q |
| |
|
|||||||||| | |||||| || | |||||||||| |||| |||| ||| |||||||||||||| |
|
|
| T |
34502997 |
ctcacaccacgatcacctcctccatgtagatctggattggaaggaaacaacgaccacacaaaaaca |
34502932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 19 - 228
Target Start/End: Complemental strand, 24045822 - 24045609
Alignment:
| Q |
19 |
accaacaacctttgaaaaacaaccggtaactataataattaaa--acaacagcaaccacctttgccaccataacaatcgatgcaaccttaacgaatccac |
116 |
Q |
| |
|
|||| ||||||||||||||||||| ||||||| | | | ||| |||||| |||||||||| ||||| | ||||||||||| ||||||| |||||||| |
|
|
| T |
24045822 |
accagcaacctttgaaaaacaaccagtaacta-acgattgaaacaacaacaacaaccaccttcgccacaacaacaatcgatgacaccttaatgaatccac |
24045724 |
T |
|
| Q |
117 |
ctttgcaacaacaa---caaccagtgcaacaacaaaatccaccttcatagcagcaacaccatcgatccacgtcgataaaccacaagataacagaatagtc |
213 |
Q |
| |
|
| |||||||||||| ||||||| |||||||||||||||||||||| | |||||| | |||||||||| || ||||||| |||||||||| ||||| |
|
|
| T |
24045723 |
cgttgcaacaacaacaacaaccagcgcaacaacaaaatccaccttcacaacagcaatatcatcgatccatacggacaaaccaccagataacagagtagtc |
24045624 |
T |
|
| Q |
214 |
gaaccggatgagaag |
228 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
24045623 |
gaaccggatgagaag |
24045609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 36 - 196
Target Start/End: Original strand, 14287470 - 14287633
Alignment:
| Q |
36 |
aacaaccggtaactataataattaaaacaacagcaaccacctttgccaccataacaatcgatgcaaccttaacgaatccacctttg---caacaacaaca |
132 |
Q |
| |
|
||||||| ||||| |||| ||| |||||||| |||||| ||| ||||| | |||||||||||| ||||||||||| |||||||| ||||||||||| |
|
|
| T |
14287470 |
aacaaccagtaacaataacgattgaaacaacaacaaccatcttcgccacaactacaatcgatgcacccttaacgaattcacctttggtacaacaacaaca |
14287569 |
T |
|
| Q |
133 |
accagtgcaacaacaaaatccaccttcatagcagcaacaccatcgatccacgtcgataaaccac |
196 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||| ||| ||| | || ||||||| |
|
|
| T |
14287570 |
actggtgcaacaacaaaatccaccttcatagcagcaacaccattgattcacattgacaaaccac |
14287633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 144; Significance: 2e-75; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 60 - 376
Target Start/End: Original strand, 5051216 - 5051535
Alignment:
| Q |
60 |
aaacaacagcaaccacctttgccaccataacaatcgatgcaaccttaacgaatccacctttgcaacaacaa-caaccagtgcaacaacaaaatccacctt |
158 |
Q |
| |
|
|||||||| |||||||||| ||||| | ||||||| ||| ||||||||||||||||||||||||||||| |||||| | |||||||||||||||||| |
|
|
| T |
5051216 |
aaacaacaacaaccaccttcgccacaacaacaatcaatgtctccttaacgaatccacctttgcaacaacaaacaaccaacgaaacaacaaaatccacctt |
5051315 |
T |
|
| Q |
159 |
catagcagcaacaccatcgatccacgtcgataaaccacaagataacagaatagtcgaaccggatgagaaggttctgatcgaacccaaccgttgaggatcc |
258 |
Q |
| |
|
|||||||| |||| |||||||| || | ||||||| | |||||||| ||||| ||||||||||||||||| |||||||||||||||||||| || || |
|
|
| T |
5051316 |
tgcagcagcaaaaccaacgatccacatcaacaaaccaccatataacagagtagtcaaaccggatgagaaggttatgatcgaacccaaccgttgaagaccc |
5051415 |
T |
|
| Q |
259 |
actgacacctcctcacaccgccaaaaacgtggcctacat-accacctcacaccaccaacacctcatcaacatagatctggagcggaa-gaaataaccacc |
356 |
Q |
| |
|
|| |||||||||||||||| ||||||| ||||||||||| |||||||||||| ||| |||||| || ||||||||||||| |||| |||| ||||||| |
|
|
| T |
5051416 |
accgacacctcctcacaccaccaaaaatgtggcctacatcaccacctcacacacccatcacctcctccacatagatctggattggaaggaaacaaccacc |
5051515 |
T |
|
| Q |
357 |
acacaaaaacaccaaacaat |
376 |
Q |
| |
|
|||||||||||||| ||||| |
|
|
| T |
5051516 |
acacaaaaacaccagacaat |
5051535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 122 - 370
Target Start/End: Original strand, 36592795 - 36593045
Alignment:
| Q |
122 |
caacaacaacaaccagtgcaacaacaaaatccaccttcatagcagcaacaccatcgatccacgtcgataaaccacaagataacagaatagtcgaaccgga |
221 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||| | ||||| ||||||||||||||||||| ||||||| |||||||||| ||| | |||||| |
|
|
| T |
36592795 |
caacaacaacaatcagtgcaacaacaaaatccaccttcacaacagcaccaccatcgatccacgtcgacaaaccaccagataacagagtagccaaaccggg |
36592894 |
T |
|
| Q |
222 |
tgagaaggttctgatcgaacccaaccgttgaggatccactgacacctcctcacaccgccaaaaacgtggcctacat-accacctcacaccaccaacacct |
320 |
Q |
| |
|
|||||||||| |||||||||||||| ||||| || |||| | | | |||||||||| ||||||| ||||||||||| ||||||||||||||||| ||||| |
|
|
| T |
36592895 |
tgagaaggttatgatcgaacccaacagttgaagacccaccggcccttcctcacaccaccaaaaatgtggcctacatcaccacctcacaccaccatcacct |
36592994 |
T |
|
| Q |
321 |
catcaacatagatctggagcggaa-gaaataaccaccacacaaaaacacca |
370 |
Q |
| |
|
| || ||||||||||||| | ||| |||| || |||||||||||||||||| |
|
|
| T |
36592995 |
cctccacatagatctggatcagaaggaaacaatcaccacacaaaaacacca |
36593045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 19 - 285
Target Start/End: Original strand, 1242521 - 1242792
Alignment:
| Q |
19 |
accaacaacctttgaaaaacaaccggtaactataataattaaaacaacagcaaccacctttgc--caccataacaatcgatgcaaccttaacgaatccac |
116 |
Q |
| |
|
|||||||||||||||||||| || |||| | |||| ||| |||||||| |||||||||| || ||| | ||||||||||| |||||||||||||||| |
|
|
| T |
1242521 |
accaacaacctttgaaaaaccactggtagcaataacgattgaaacaacaacaaccaccttcgcgccacaacaacaatcgatgtcaccttaacgaatccac |
1242620 |
T |
|
| Q |
117 |
ctttgcaac---aacaacaaccagtgcaacaacaaaatccaccttcatagcagcaacaccatcgatccacgtcgataaaccacaagataacagaatagtc |
213 |
Q |
| |
|
|| |||||| ||||||||||| ||||||| |||||||||||||| |||||||||| |||||||||| |||| ||||||| |||||| | ||||| |
|
|
| T |
1242621 |
ctctgcaacaacaacaacaaccatcgcaacaataaaatccaccttcacagcagcaacatcatcgatccatctcgacaaaccaccagataatgtagtagtc |
1242720 |
T |
|
| Q |
214 |
gaaccggatgagaaggttctgatcgaacccaaccgttgaggatccactgacacctcctcacaccgccaaaaa |
285 |
Q |
| |
|
||||||||||| || ||| |||||||||||| ||||| |||||| |||||||||||| || ||||||| |
|
|
| T |
1242721 |
gaaccggatgaaaatgttatgatcgaacccagttgttgaacatccaccaacacctcctcacgccaccaaaaa |
1242792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 22 - 76
Target Start/End: Original strand, 36592716 - 36592770
Alignment:
| Q |
22 |
aacaacctttgaaaaacaaccggtaactataataattaaaacaacagcaaccacc |
76 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||| |||||||| |||||||| |
|
|
| T |
36592716 |
aacaacctttgaaaaacaaccggtaactataacgattgaaacaacaacaaccacc |
36592770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 141; Significance: 9e-74; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 141; E-Value: 9e-74
Query Start/End: Original strand, 22 - 367
Target Start/End: Complemental strand, 36608162 - 36607815
Alignment:
| Q |
22 |
aacaacctttgaaaaacaaccggtaactataataattaaaacaacagcaaccacctttgccaccataacaatcgatgcaaccttaacgaatccacctttg |
121 |
Q |
| |
|
||||||||||||||||||||| |||||||||| ||| |||||||| |||||||||| ||||| | ||||||| ||| ||||||||||||||||||||| |
|
|
| T |
36608162 |
aacaacctttgaaaaacaaccagtaactataacgattgaaacaacaacaaccaccttcgccacaacaacaatcaatgacaccttaacgaatccacctttg |
36608063 |
T |
|
| Q |
122 |
caacaacaacaaccagtgcaacaacaaaatccaccttcatagcagcaacaccatcgatccacgtcgataaaccacaag-ataacagaatagtcgaaccgg |
220 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||| | || ||||||||||||||||| |||| ||||||| | | || ||| ||||||||| || |
|
|
| T |
36608062 |
caacaacaacaaccagcgcaacaacaaaatccaccttcacaacaacaacaccatcgatccacatcgacaaaccaccggaaaaatagagtagtcgaactgg |
36607963 |
T |
|
| Q |
221 |
atgagaaggttctgatcgaacccaaccgttgaggatccactgacacctcctcacaccgccaaaaacgtggcctacat-accacctcacaccaccaacacc |
319 |
Q |
| |
|
|||| |||||||||||||||||| ||| |||| || ||| |||| |||||||||| | ||||| ||||||||||| ||||||||||||||||| || | |
|
|
| T |
36607962 |
atgaaaaggttctgatcgaaccc-accattgaagactcaccgacatctcctcacactacaaaaaatgtggcctacatcaccacctcacaccaccatcaac |
36607864 |
T |
|
| Q |
320 |
tcatcaacatagatctggagcggaa-gaaataaccaccacacaaaaaca |
367 |
Q |
| |
|
|| || ||||| ||||||| |||| |||| |||||||| |||||||| |
|
|
| T |
36607863 |
tcctccacataaatctggattggaaggaaacaaccaccaagcaaaaaca |
36607815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 19 - 375
Target Start/End: Complemental strand, 27632492 - 27632131
Alignment:
| Q |
19 |
accaacaacctttgaaaaacaaccggtaactataataattaaaacaacagcaaccacctttgccaccataacaatcgatgcaaccttaacgaatccacct |
118 |
Q |
| |
|
||||||| ||||||||||||||| |||||||||| ||| |||||||| |||||||||||||||| | ||||||||||| ||||||| ||||||| | |
|
|
| T |
27632492 |
accaacagcctttgaaaaacaacatgtaactataacgattgaaacaacaacaaccacctttgccacaacaacaatcgatgtcaccttaatgaatccatcc |
27632393 |
T |
|
| Q |
119 |
---ttgcaacaacaacaaccagtgcaacaacaaaatccaccttcatagcagcaacaccatcgatccacgtcgataaaccacaagataacagaatagtcga |
215 |
Q |
| |
|
||| ||||||||||||||| | |||||||||||||| |||| | |||||| ||||||||||||| ||| ||||||| | |||||| | ||||| | |
|
|
| T |
27632392 |
accttgaaacaacaacaaccagcgtcacaacaaaatccactttcacaacagcaataccatcgatccacatcggcaaaccaccatataacatagtagtcaa |
27632293 |
T |
|
| Q |
216 |
accggatgagaaggttctgatcgaacccaaccgttgaggatccactgacacctcctcacaccgccaaaaacgtggcctacat-accacctcacaccacca |
314 |
Q |
| |
|
||| ||| ||||| |||| ||| |||||| ||||||| || |||| |||||||||||||||| | ||||||||| ||||||| ||||||||| ||||||| |
|
|
| T |
27632292 |
accagattagaagattctaatcaaacccacccgttgaagacccaccgacacctcctcacaccacaaaaaacgtgacctacatcaccacctcataccacca |
27632193 |
T |
|
| Q |
315 |
acacctcatcaacatagatctggagcggaa-gaaataaccaccacacaaaaacaccaaacaa |
375 |
Q |
| |
|
|||||| || ||| ||||||||| ||||| |||| |||||||||||||||||||||||||| |
|
|
| T |
27632192 |
gcacctcctctacacagatctggatcggaaggaaacaaccaccacacaaaaacaccaaacaa |
27632131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 60 - 368
Target Start/End: Original strand, 9436242 - 9436558
Alignment:
| Q |
60 |
aaacaacagcaaccacctttgccaccataacaatcgatgcaaccttaacgaatccacctttgcaac------aacaacaaccagtgcaacaacaaaatcc |
153 |
Q |
| |
|
|||||||| |||||||||| ||| | | ||||||||||| ||||||||||| ||| |||||||| |||||||||||| ||||||||||||||| |
|
|
| T |
9436242 |
aaacaacaacaaccaccttcgccgcaacaacaatcgatgtcaccttaacgaactcacttttgcaacaacaacaacaacaaccagcgcaacaacaaaatcc |
9436341 |
T |
|
| Q |
154 |
accttcatagcagcaacaccatcgatccacgtcgataaaccacaagataacagaatagtcgaaccggatgagaaggttctgatcgaacccaaccgttgag |
253 |
Q |
| |
|
||||||| | || ||||||||||||||||| |||| ||||||| |||||||||| || ||||||| |||||||||||| |||| |||| || ||||||| |
|
|
| T |
9436342 |
accttcaaaccatcaacaccatcgatccacatcgacaaaccactagataacagagtaatcgaaccagatgagaaggttttgattgaactcagccgttgaa |
9436441 |
T |
|
| Q |
254 |
gatccactgacacctcctcacaccgccaaaaacgtggcctacat-accacctcacaccaccaacacctcatcaacatagatctggagcggaa-gaaataa |
351 |
Q |
| |
|
|| |||| |||||||||||||||| | ||||| ||||| ||||| ||||||||||||| ||| ||||| || ||||||||||||| ||||| |||| | |
|
|
| T |
9436442 |
gacccaccgacacctcctcacaccacaaaaaatgtggcttacatcaccacctcacacccccattacctcctccacatagatctggatcggaaggaaacat |
9436541 |
T |
|
| Q |
352 |
ccaccacacaaaaacac |
368 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
9436542 |
acaccacacaaaaacac |
9436558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 139 - 375
Target Start/End: Original strand, 33758078 - 33758314
Alignment:
| Q |
139 |
gcaacaacaaaatccaccttcatagcagcaacaccatcgatccacgtcgataaaccacaagataacagaatagtcgaaccggatgagaaggttctgatcg |
238 |
Q |
| |
|
|||||||| ||||||||| ||| | | |||||||||||||||||| |||| |||||| ||||||||| ||||||||| |||||||||||||||||||| |
|
|
| T |
33758078 |
gcaacaaccaaatccaccatcacaacggcaacaccatcgatccacatcgacaaaccatcagataacag--tagtcgaactggatgagaaggttctgatcg |
33758175 |
T |
|
| Q |
239 |
aacccaaccgttgaggatccactgacacctcctcacaccgccaaaaacgtggcctacat-accacctcacaccaccaacacctcatcaacatagatctgg |
337 |
Q |
| |
|
|||||||||||||| || |||| | |||||||||||||| ||||||| ||||||||||| ||||||||||||||||| ||||||||| ||| |||||||| |
|
|
| T |
33758176 |
aacccaaccgttgaagacccaccggcacctcctcacaccaccaaaaatgtggcctacatcaccacctcacaccaccatcacctcatccacaaagatctgg |
33758275 |
T |
|
| Q |
338 |
agcggaa-gaaataaccaccacacaaaaacaccaaacaa |
375 |
Q |
| |
|
| ||||| |||| | ||||||||| ||||||||| |||| |
|
|
| T |
33758276 |
atcggaaggaaacatccaccacactaaaacaccagacaa |
33758314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 60 - 149
Target Start/End: Original strand, 33757956 - 33758048
Alignment:
| Q |
60 |
aaacaacagcaaccacctttgccaccataacaatcgatgcaaccttaacgaatccacctttgcaac---aacaacaaccagtgcaacaacaaa |
149 |
Q |
| |
|
|||||||| |||||||||| ||||| | ||||||||||| || |||||||||||||||||||||| |||||||||||| ||||||||||| |
|
|
| T |
33757956 |
aaacaacaacaaccaccttcgccacaacaacaatcgatgtcacattaacgaatccacctttgcaacaacaacaacaaccagcgcaacaacaaa |
33758048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 137; Significance: 2e-71; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 19 - 375
Target Start/End: Complemental strand, 32947197 - 32946848
Alignment:
| Q |
19 |
accaacaacctttgaaaaacaaccggtaactataataattaaaacaacagcaaccacctttgccaccataacaatcgatgcaaccttaacgaatccacct |
118 |
Q |
| |
|
|||||||||||||||||| ||||| ||||||||||| ||| |||||||| |||||||||| ||||| | |||||| |||| |||||||||||||||||| |
|
|
| T |
32947197 |
accaacaacctttgaaaagcaaccagtaactataatgattgaaacaacaacaaccaccttcgccacaacaacaattgatgtcaccttaacgaatccacct |
32947098 |
T |
|
| Q |
119 |
ttgcaacaacaacaaccagtgcaacaacaaaatc----caccttcatagcagcaacaccatcgatccacgtcgataaaccacaagataacagaatagtcg |
214 |
Q |
| |
|
||||||||||||| ||| ||||||||||||| |||||||| || |||||||||| | |||||| || | ||||| ||| |||||| |
|
|
| T |
32947097 |
ttgcaacaacaac---cagcgcaacaacaaaattaatacaccttcacaggagcaacaccaacaatccacatcta----------gataatagagtagtcg |
32947011 |
T |
|
| Q |
215 |
aaccggatgagaaggttctgatcgaacccaaccgttgaggatccactgacacctcctcacaccgccaaaaacgtggcctacat-accacctcacaccacc |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| || ||| |||||||||||||||| ||||||| ||||||||||| ||||||| |||||||| |
|
|
| T |
32947010 |
aaccggatgagaaggttctgatcgaacccaaccgttgaagacccatcgacacctcctcacaccaccaaaaatgtggcctacatcaccaccttacaccacc |
32946911 |
T |
|
| Q |
314 |
aacacctcatcaacatagatctggagcggaa-gaaataaccaccacacaaaaacaccaaacaa |
375 |
Q |
| |
|
| |||||| || |||||||| |||| | ||| |||| ||||||||||||||||||||| |||| |
|
|
| T |
32946910 |
atcacctcctccacatagatttggatcagaaggaaacaaccaccacacaaaaacaccagacaa |
32946848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 25 - 282
Target Start/End: Original strand, 27109638 - 27109901
Alignment:
| Q |
25 |
aacctttgaaaaacaaccggtaactataataattaaaacaacagcaaccacctttgccaccataacaatcgatgcaaccttaacgaatccacctttgcaa |
124 |
Q |
| |
|
|||||||||||||| |||| |||| |||| |||| |||||||| |||||||||| |||| | |||||||||| |||||| | ||||||||||||||| |
|
|
| T |
27109638 |
aacctttgaaaaaccaccgataacaataacaattgaaacaacaacaaccaccttcaccacaacaacaatcgatctcaccttagcaaatccacctttgcaa |
27109737 |
T |
|
| Q |
125 |
------caacaacaaccagtgcaacaacaaaatccaccttcatagcagcaacaccatcgatccacgtcgataaaccacaagataacagaatagtcgaacc |
218 |
Q |
| |
|
|||||||| |||| |||||||||||||||||||||| |||||||||||||||||||||| |||| ||||||| |||||||||| |||||||||| |
|
|
| T |
27109738 |
taacaacaacaacatccagcgcaacaacaaaatccaccttcacagcagcaacaccatcgatccacatcgacaaaccaccagataacagagtagtcgaacc |
27109837 |
T |
|
| Q |
219 |
ggatgagaaggttctgatcgaacccaaccgttgaggatccactgacacctcctcacaccgccaa |
282 |
Q |
| |
|
||||||||| |||||||||||||| ||||||||| || |||| | |||||||||||||| |||| |
|
|
| T |
27109838 |
ggatgagaatgttctgatcgaaccaaaccgttgaagacccaccggcacctcctcacaccaccaa |
27109901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 61 - 136
Target Start/End: Original strand, 39629481 - 39629556
Alignment:
| Q |
61 |
aacaacagcaaccacctttgccaccataacaatcgatgcaaccttaacgaatccacctttgcaacaacaacaacca |
136 |
Q |
| |
|
||||||| |||||||||| ||||| | |||||||||| || |||||||||||| |||||||||||||||||||| |
|
|
| T |
39629481 |
aacaacaacaaccaccttcgccacaacaacaatcgatatcacgttaacgaatccatctttgcaacaacaacaacca |
39629556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 136; Significance: 9e-71; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 19 - 375
Target Start/End: Original strand, 47588820 - 47589180
Alignment:
| Q |
19 |
accaacaacctttgaaaaacaaccggtaactataataattaaaacaacagcaaccacctttgccaccataacaatcgatgcaaccttaacgaatccacct |
118 |
Q |
| |
|
|||||||||||| |||||||||| |||||||||| ||| |||||||| | |||||| | ||||| | ||||||| ||| |||||||||||||||||| |
|
|
| T |
47588820 |
accaacaacctt-gaaaaacaacttataactataatgattgaaacaacaaccaccaccatcgccacaacaacaatctatgtcaccttaacgaatccacct |
47588918 |
T |
|
| Q |
119 |
ttgcaac---aacaacaaccagtgcaacaacaaaatccaccttcatagcagcaacaccatcgatccacgtcgataaaccacaagataacagaatagtcga |
215 |
Q |
| |
|
||||||| |||||||||||| |||||||||||||||||||||| ||||||||||||| || | ||| |||| ||| || |||||||| | ||||| | |
|
|
| T |
47588919 |
ttgcaacaacaacaacaaccagcgcaacaacaaaatccaccttcacagcagcaacaccaacgtttcacatcgacaaatcatcagataacacagtagtcaa |
47589018 |
T |
|
| Q |
216 |
accggatgagaaggttctgatcgaacccaaccgttgaggatccactgacacctcctcacaccgccaaaaacgtggcctacat-accacctcacaccacca |
314 |
Q |
| |
|
||||||||||||| |||||||||||| |||||||| | || |||| |||||||||||||||| ||||| ||||||||||| ||||||||||||||| | |
|
|
| T |
47589019 |
accggatgagaagattctgatcgaactcaaccgttaaagacccaccgacacctcctcacaccataaaaaatgtggcctacatcaccacctcacaccacta |
47589118 |
T |
|
| Q |
315 |
acacctcatcaacatagatctggagcggaa-gaaataaccaccacacaaaaacaccaaacaa |
375 |
Q |
| |
|
|| |||||| ||||||| ||||| | ||| |||| |||||||||||||||||||||||| |
|
|
| T |
47589119 |
tcatctcatccacatagacctggatcagaaggaaacgtccaccacacaaaaacaccaaacaa |
47589180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 19 - 297
Target Start/End: Complemental strand, 40074570 - 40074287
Alignment:
| Q |
19 |
accaacaacctttgaaaaacaaccggtaactataataattaaaacaacagcaaccacctttgccaccataacaatcgatgcaaccttaacgaatccacct |
118 |
Q |
| |
|
|||||||||||||||||||| ||||||||| |||| ||| ||| |||| |||||||||| | ||| | ||||||||||| |||| ||||||||||||| |
|
|
| T |
40074570 |
accaacaacctttgaaaaaccaccggtaacaataacgattgaaaaaacaacaaccaccttcgtcacaacaacaatcgatgtcacctcaacgaatccacct |
40074471 |
T |
|
| Q |
119 |
ttgcaacaa---caacaaccagtgcaacaacaaaatccaccttcatagcagcaacaccatcgatccacgtcgataaaccacaagataacagaatagtcga |
215 |
Q |
| |
|
||||||||| ||||||||| |||||||||||||||||||||| |||||||||||||||||||||| |||| ||||||| |||||||| | ||||||| |
|
|
| T |
40074470 |
ttgcaacaataacaacaaccatcgcaacaacaaaatccaccttcagagcagcaacaccatcgatccacctcgacaaaccaccagataacatagtagtcga |
40074371 |
T |
|
| Q |
216 |
accggatgagaaggttctgatcgaacccaaccgttgaggatccactgacacctcct--cacaccgccaaaaacgtggcctacat |
297 |
Q |
| |
|
||||||||||||||||||||||||||||| | ||| || |||| |||||||||| |||||| | ||||||||||||||||| |
|
|
| T |
40074370 |
accggatgagaaggttctgatcgaacccagtcattggagacccaccgacacctcctcacacaccacaaaaaacgtggcctacat |
40074287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 19 - 375
Target Start/End: Complemental strand, 5893215 - 5892859
Alignment:
| Q |
19 |
accaacaacctttgaaaaacaaccggtaactataataattaaaacaacagcaaccacctttgccaccataacaatcgatgcaaccttaacgaatccacct |
118 |
Q |
| |
|
|||||||||||||||||||||| || ||||||| | ||| || ||||| |||||| ||| ||||| | | || |||||| ||||||||||||| |||| |
|
|
| T |
5893215 |
accaacaacctttgaaaaacaatcg-taactatgacgattgaagcaacaacaaccatcttcgccacaaca-cattcgatgacaccttaacgaatctacct |
5893118 |
T |
|
| Q |
119 |
ttgcaacaacaacaac---cagtgcaacaacaaaatccaccttcatagcagcaacaccatcgatccacgtcgataaaccacaagataacagaatagtcga |
215 |
Q |
| |
|
|||||||||||||||| || ||||||||| |||| || |||| | || |||||||||| |||||| |||| ||||||| |||||||||| || |||| |
|
|
| T |
5893117 |
ttgcaacaacaacaacaaccaacgcaacaacagaatcaac-ttcacaacaacaacaccatcaatccacatcgacaaaccaccagataacagagtaatcga |
5893019 |
T |
|
| Q |
216 |
accggatgagaaggttctgatcgaacccaaccgttgaggatccactgacacctcctcacaccgccaaaaacgtggcctacat-accacctcacaccacca |
314 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||| || |||| ||||| |||||||||| | |||||||||||| |||| ||| ||||||||||||| |
|
|
| T |
5893018 |
accggatgagaaggttctgattgaacccaaccgttgaagacccaccgacacttcctcacaccacaaaaaacgtggccgacatcaccgcctcacaccacca |
5892919 |
T |
|
| Q |
315 |
acacctcatcaacatagatctggagcggaagaaataaccaccacacaaaaacaccaaacaa |
375 |
Q |
| |
|
|||||| || ||||||||||| | |||||| || ||||||||||||||||||||| |||| |
|
|
| T |
5892918 |
tcacctcctccacatagatctgaatcggaaggaa-aaccaccacacaaaaacaccagacaa |
5892859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 60 - 375
Target Start/End: Complemental strand, 15121732 - 15121417
Alignment:
| Q |
60 |
aaacaacagcaaccacctttgccaccataacaatcgatgcaaccttaacgaatccacctttgcaacaacaacaaccagtgcaacaacaaaatccaccttc |
159 |
Q |
| |
|
|||||||| |||||||||| ||||| | ||||||||||| ||||||| ||||| ||||||||| || ||||||||| | |||||||||| |||||||| |
|
|
| T |
15121732 |
aaacaacaacaaccaccttcgccacaacaacaatcgatgtcaccttaatgaatctacctttgcagcagaaacaaccagcggaacaacaaaacccaccttc |
15121633 |
T |
|
| Q |
160 |
atagcagcaacaccatcgatccacgtcgataaaccacaagataacagaatagtcgaaccggatgagaaggttctgatcgaacccaaccgttgaggatcca |
259 |
Q |
| |
|
| ||||||||||||||||| |||| || | |||| | |||||||| |||||||||| ||||||||||||||||||||||| ||||||||| || ||| |
|
|
| T |
15121632 |
acagcagcaacaccatcga-ccacactgacataccaacaaataacagagtagtcgaaccagatgagaaggttctgatcgaacc-aaccgttgaagaccca |
15121535 |
T |
|
| Q |
260 |
ctgacacctcctcacaccgccaaaaacgtggcctacat-accacctcacaccaccaacacctcatcaacatagatctggagcggaa-gaaataaccacca |
357 |
Q |
| |
|
|||||||||||||||||| ||||||| ||||||||||| ||||||||||||| ||| || ||| || | ||||||||||| ||||| |||| | |||||| |
|
|
| T |
15121534 |
ctgacacctcctcacaccaccaaaaatgtggcctacatcaccacctcacacccccatcaactcctccatatagatctggatcggaaggaaacatccacca |
15121435 |
T |
|
| Q |
358 |
cacaaaaacaccaaacaa |
375 |
Q |
| |
|
||||||| ||||| |||| |
|
|
| T |
15121434 |
cacaaaagcaccagacaa |
15121417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 25 - 307
Target Start/End: Original strand, 36934034 - 36934320
Alignment:
| Q |
25 |
aacctttgaaaaacaaccggtaactataataattaaaacaacagcaaccacctttgccaccataacaatcgatgcaaccttaacgaatccacctttgcaa |
124 |
Q |
| |
|
||||||||||||||||||| | ||| ||| ||| |||||||| |||||||||| ||||| | |||| |||||| ||||||| ||||||||| |||||| |
|
|
| T |
36934034 |
aacctttgaaaaacaaccgattactttaacgattgaaacaacaacaaccaccttcgccacaacaacagtcgatgacaccttaatgaatccaccgttgcaa |
36934133 |
T |
|
| Q |
125 |
caacaacaac---cagtgcaacaacaaaatccaccttcatagcagcaacaccatcgatccacgtcgataaaccacaagataacagaatagtcgaaccgga |
221 |
Q |
| |
|
|||||||||| || |||||||||||||||||| ||| |||||||||| |||| |||||| | ||||||| |||||| ||| |||||||||| || |
|
|
| T |
36934134 |
caacaacaacaaccaacgcaacaacaaaatccaccatcacagcagcaacatcatcaatccacactggcaaaccaccagataatagagtagtcgaaccaga |
36934233 |
T |
|
| Q |
222 |
tgagaaggttctgatcgaacccaaccgttgaggatccactgacacctcctcacaccgccaaaaacgtggcctacat-accacctcac |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||| || |||| |||||||||||||||| ||||||| ||| ||||||| |||||||||| |
|
|
| T |
36934234 |
tgagaaggttctgatcgaacccaaccgttgaagacccaccgacacctcctcacaccaccaaaaatgtgacctacatcaccacctcac |
36934320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 91 - 375
Target Start/End: Original strand, 26199638 - 26199930
Alignment:
| Q |
91 |
aatcgatgcaaccttaacgaatccacctttgcaa------caacaacaaccagtgcaacaacaaaatccaccttcatagcagcaacaccatcgatccacg |
184 |
Q |
| |
|
|||||||| |||||||||||| ||||||||||| |||||||||||| ||| | ||||||||||||||| | || ||||||||||||| ||| |
|
|
| T |
26199638 |
aatcgatgtgaccttaacgaattcacctttgcaacagcaacaacaacaaccatcccaatagcaaaatccaccttcacaacaacaacaccatcgatacaca |
26199737 |
T |
|
| Q |
185 |
tcgataaaccacaagataacagaatagtcgaaccggatgagaaggttctgatcgaacccaaccgttgaggatccactgacacctcctcacaccgccaaaa |
284 |
Q |
| |
|
|||| ||||||| | |||| ||| |||||||||| ||||||||||| |||||||||||||||| |||| || |||| | ||| |||||||||| |||||| |
|
|
| T |
26199738 |
tcgacaaaccaccaaataatagagtagtcgaacctgatgagaaggtactgatcgaacccaaccattgaagacccaccgtcacatcctcacaccaccaaaa |
26199837 |
T |
|
| Q |
285 |
acgtggcctacat-accacctcacaccaccaacacctcatcaacatagatctggagcggaa-gaaataaccaccacacaaaaacaccaaacaa |
375 |
Q |
| |
|
|||| || || || |||||||||||| |||| ||||| || ||||||||||||| ||||| |||| ||||||||||||||||||||| |||| |
|
|
| T |
26199838 |
acgtagcatagatcaccacctcacacaaccatcaccttctctacatagatctggatcggaaggaaacaaccaccacacaaaaacaccagacaa |
26199930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 19 - 98
Target Start/End: Original strand, 26199424 - 26199503
Alignment:
| Q |
19 |
accaacaacctttgaaaaacaaccggtaactataataattaaaacaacagcaaccacctttgccaccataacaatcgatg |
98 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||| ||| |||||||| |||||| ||| ||| | ||||||||||| |
|
|
| T |
26199424 |
accaacaacctttgaaaaacaactggtaactataatgattgaaacaacaacaaccagcttcgccgcagcaacaatcgatg |
26199503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 116; Significance: 8e-59; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 107 - 375
Target Start/End: Complemental strand, 38149705 - 38149432
Alignment:
| Q |
107 |
acgaatccacctttgca---acaacaacaaccagtgcaacaacaaaatccaccttcatagcagcaacaccatcgatccacgtcgataaaccacaagataa |
203 |
Q |
| |
|
||||||||||||||||| ||||||||||||| |||||||||||||||||||||| ||||||| ||||||||||||||||||| ||||||| | |||| |
|
|
| T |
38149705 |
acgaatccacctttgcagcaacaacaacaaccaacgcaacaacaaaatccaccttcacagcagcaccaccatcgatccacgtcgacaaaccaccaaataa |
38149606 |
T |
|
| Q |
204 |
cagaatagtcgaaccggatgagaaggttctgatcgaacccaaccgttgaggatccactgacacctcctcacaccgccaaaaacgtggcctacat-accac |
302 |
Q |
| |
|
|||| || |||||||| |||||||||||||||||||||| || |||| || | || | | | |||||||||| ||||||| ||||| ||||| ||||| |
|
|
| T |
38149605 |
cagagtacccgaaccgggtgagaaggttctgatcgaacccgacaattgaagaccaaccggcccttcctcacaccaccaaaaatgtggcgtacatcaccac |
38149506 |
T |
|
| Q |
303 |
ctcacaccaccaacacctcatcaacatagatctggagcggaa-gaaataaccaccacacaaaaacaccaaacaa |
375 |
Q |
| |
|
||||||||||| |||||| || | ||||||||||| ||||| |||| ||||||||||||||||||||| |||| |
|
|
| T |
38149505 |
ttcacaccaccatcacctcctccatatagatctggatcggaaggaaacaaccaccacacaaaaacaccagacaa |
38149432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 107 - 374
Target Start/End: Complemental strand, 32919696 - 32919433
Alignment:
| Q |
107 |
acgaatccacctttgcaacaa---caacaaccagtgcaacaacaaaatccaccttcatagcagcaacaccatcgatccacgtcgataaaccacaagataa |
203 |
Q |
| |
|
|||||||| |||||||||||| |||||||||| |||||||||||||||||||||| ||||||| ||||||||||||||||||| ||||||| |||||| |
|
|
| T |
32919696 |
acgaatccgcctttgcaacaataacaacaaccagcgcaacaacaaaatccaccttcacagcagcaccaccatcgatccacgtcgacaaaccaccagataa |
32919597 |
T |
|
| Q |
204 |
cagaatagtcgaaccggatgag-aaggttctgatcgaacccaaccgttgaggatccactgacacctcctcacaccgccaaaaacgtggcctacataccac |
302 |
Q |
| |
|
|||| || |||||||| |||| ||||||||||| ||||| ||| ||| | || |||| | | | |||||||||| |||||| ||||||||||| |
|
|
| T |
32919596 |
cagagtacccgaaccgggtgagaaaggttctgattgaacctaacagttcaagacccaccggcccttcctcacaccaccaaaactgtggcctacat----- |
32919502 |
T |
|
| Q |
303 |
ctcacaccaccaacacctcatcaacatagatctggagcggaa-gaaataaccaccacacaaaaacaccaaaca |
374 |
Q |
| |
|
|||||||| |||||| || ||||||||||||| ||||| |||| ||||||||||||||| ||||||||| |
|
|
| T |
32919501 |
----caccaccatcacctcctccacatagatctggatcggaaggaaacaaccaccacacaaaagcaccaaaca |
32919433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 188 - 375
Target Start/End: Original strand, 20518974 - 20519163
Alignment:
| Q |
188 |
ataaaccacaagataacagaatagtcgaaccggatgagaaggttctgatcgaacccaaccgttgaggatccactgacacctcctcacaccgccaaaaacg |
287 |
Q |
| |
|
||||||||| |||||| ||| ||||||||||||||||||| |||||||||||||||||||||||| || |||| | | |||||||||| ||||||| | |
|
|
| T |
20518974 |
ataaaccaccagataaaagagtagtcgaaccggatgagaatgttctgatcgaacccaaccgttgaagacccaccagcccttcctcacaccaccaaaaatg |
20519073 |
T |
|
| Q |
288 |
tggcctacat-accacctcacaccaccaacacctcatcaacatagatctggagcggaa-gaaataaccaccacacaaaaacaccaaacaa |
375 |
Q |
| |
|
||| |||||| ||||||||||||||||| |||||| || ||||||||||||| ||||| |||| ||||||||||||||||| ||| |||| |
|
|
| T |
20519074 |
tggtctacatcaccacctcacaccaccatcacctcctccacatagatctggatcggaaggaaacaaccaccacacaaaaactccagacaa |
20519163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 125 - 183
Target Start/End: Original strand, 20516575 - 20516633
Alignment:
| Q |
125 |
caacaacaaccagtgcaacaacaaaatccaccttcatagcagcaacaccatcgatccac |
183 |
Q |
| |
|
||||||||||||| ||||||||||||| ||||||| |||||||||| ||||||||||| |
|
|
| T |
20516575 |
caacaacaaccagcgcaacaacaaaattcaccttcgcagcagcaacatcatcgatccac |
20516633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 22 - 76
Target Start/End: Complemental strand, 38149760 - 38149706
Alignment:
| Q |
22 |
aacaacctttgaaaaacaaccggtaactataataattaaaacaacagcaaccacc |
76 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||| |||||||| |||||||| |
|
|
| T |
38149760 |
aacaacctttgaaaaacaaccggtaactataacgattgaaacaacaacaaccacc |
38149706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 22 - 72
Target Start/End: Original strand, 20516502 - 20516552
Alignment:
| Q |
22 |
aacaacctttgaaaaacaaccggtaactataataattaaaacaacagcaac |
72 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||| |||||||| |||| |
|
|
| T |
20516502 |
aacaacctttgaaaaacaaccggtaactataacgattgaaacaacaacaac |
20516552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 22 - 76
Target Start/End: Complemental strand, 32919751 - 32919697
Alignment:
| Q |
22 |
aacaacctttgaaaaacaaccggtaactataataattaaaacaacagcaaccacc |
76 |
Q |
| |
|
|||||| ||||||||||||||||||||||||| ||| |||||||| |||||||| |
|
|
| T |
32919751 |
aacaacatttgaaaaacaaccggtaactataacgattgaaacaacaacaaccacc |
32919697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 91 - 183
Target Start/End: Original strand, 54846 - 54936
Alignment:
| Q |
91 |
aatcgatgcaaccttaac-gaatccacctttgcaacaacaacaaccagtgcaacaacaaaatccaccttcatagcagcaacaccatcgatccac |
183 |
Q |
| |
|
|||||||| |||||||| ||||||||||| |||||||||||||||| ||||||||||||||||||| | |||||||||||||||||||| |
|
|
| T |
54846 |
aatcgatgtcaccttaacagaatccaccttcgcaacaacaacaacca---tcacaacaaaatccaccttcacaacagcaacaccatcgatccac |
54936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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