View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9652_high_3 (Length: 418)

Name: NF9652_high_3
Description: NF9652
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9652_high_3
NF9652_high_3
[»] chr1 (10 HSPs)
chr1 (219-398)||(23650161-23650340)
chr1 (220-398)||(23618817-23618995)
chr1 (220-398)||(23735787-23735965)
chr1 (1-154)||(23735564-23735721)
chr1 (1-154)||(23649939-23650096)
chr1 (1-154)||(23618593-23618751)
chr1 (38-154)||(23626751-23626871)
chr1 (38-154)||(23708477-23708597)
chr1 (219-314)||(23626578-23626676)
chr1 (219-314)||(23708304-23708402)
[»] chr3 (6 HSPs)
chr3 (224-398)||(52806782-52806962)
chr3 (225-375)||(54141198-54141351)
chr3 (14-119)||(53286991-53287104)
chr3 (12-75)||(54141896-54141959)
chr3 (1-75)||(52806560-52806635)
chr3 (339-398)||(52806989-52807048)
[»] chr6 (1 HSPs)
chr6 (14-120)||(11842635-11842749)


Alignment Details
Target: chr1 (Bit Score: 164; Significance: 2e-87; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 219 - 398
Target Start/End: Original strand, 23650161 - 23650340
Alignment:
Q  219 caaccggttgtttaatgatgttagagaatcaactaaaatctctcaaatacatgaactatgaggaaagctcaatgcatcctccaaaataaaaagaaaatct 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  23650161 caaccggttgtttaatgatgttagagaatcaactaaaatctctcaaatacatgaactatgaggaaagctcactgcatcctccaaaataaaaagaaaatct 23650260  T
Q  319 gcaagttattatctactcggcaaggaaatagaattaacagagatgaagtgctaatgtatcaaatggaatgaagggacaag 398  Q
    ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| ||||||||||||||||||    
T  23650261 gcaagttattatctactcggcaaggaaatggaattaacagagataaagtgctaatgtatcacatggaatgaagggacaag 23650340  T

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Target: chr1; HSP #2
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 220 - 398
Target Start/End: Original strand, 23618817 - 23618995
Alignment:
Q  220 aaccggttgtttaatgatgttagagaatcaactaaaatctctcaaatacatgaactatgaggaaagctcaatgcatcctccaaaataaaaagaaaatctg 319  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  23618817 aaccggttgtttaatgatgttagagaatcaactaaaatctctcaaatacatgaactatgaggaaagctcactgcatcctccaaaataaaaagaaaatctg 23618916  T
Q  320 caagttattatctactcggcaaggaaatagaattaacagagatgaagtgctaatgtatcaaatggaatgaagggacaag 398  Q
    |||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| ||||||||||||||||||    
T  23618917 caagttattatctactcggcaaggaaatggaattaacagagataaagtgctaatgtatcacatggaatgaagggacaag 23618995  T

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Target: chr1; HSP #3
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 220 - 398
Target Start/End: Original strand, 23735787 - 23735965
Alignment:
Q  220 aaccggttgtttaatgatgttagagaatcaactaaaatctctcaaatacatgaactatgaggaaagctcaatgcatcctccaaaataaaaagaaaatctg 319  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||    
T  23735787 aaccggttgtttaatgatgttagagaatcaactaaaatctctcaaatacatgaactatgaggaaagctcgctgcatcctccaaaataaaaagaaaatctg 23735886  T
Q  320 caagttattatctactcggcaaggaaatagaattaacagagatgaagtgctaatgtatcaaatggaatgaagggacaag 398  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  23735887 caagttattatctactcggcaaggaaatggaattaacagagatgaagtgctaatgtatcaaatggattgaagggacaag 23735965  T

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Target: chr1; HSP #4
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 1 - 154
Target Start/End: Original strand, 23735564 - 23735721
Alignment:
Q  1 aacaaagtaagacaatctagaataaaaacattcatacaattggttgatattaaaaagagatgattcgagttacct----gcatttgagatttgatgacga 96  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||    |||||||||||||||| ||||    
T  23735564 aacaaagtaagacaatctagaataaaaacatccatacaattggttgatattaaaaagtgatgattcgagttacctatttgcatttgagatttgataacga 23735663  T
Q  97 ttggggagacactcggttcctggcaccattcctccaatttccaacagcacaactagta 154  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23735664 ttggggagacactcggttcctggcaccattcctccaatttccaacagcacaactagta 23735721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 1 - 154
Target Start/End: Original strand, 23649939 - 23650096
Alignment:
Q  1 aacaaagtaagacaatctagaataaaaacattcatacaattggttgatattaaaaagagatgattcgagttacct----gcatttgagatttgatgacga 96  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||  ||||||||||||||||    ||||| |||||||||||||||    
T  23649939 aacaaagtaagacaatctagaataaaaacatccatacaattggttgatattaaaaagtaatgattcgagttacctatttgcattcgagatttgatgacga 23650038  T
Q  97 ttggggagacactcggttcctggcaccattcctccaatttccaacagcacaactagta 154  Q
    ||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  23650039 ttgaggagacactcggttcctggcacctttcctccaatttccaacagcacaactagta 23650096  T

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Target: chr1; HSP #6
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 1 - 154
Target Start/End: Original strand, 23618593 - 23618751
Alignment:
Q  1 aacaaagtaagacaatctagaataaaaa-cattcatacaattggttgatattaaaaagagatgattcgagttacct----gcatttgagatttgatgacg 95  Q
    |||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| |||||||||||||||||    |||||||||||||||||| |    
T  23618593 aacaaagtaagacaatctagaataaaaaacatccatacaattggttgatattaaaaagtgatgattcgagttacctatttgcatttgagatttgatgaag 23618692  T
Q  96 attggggagacactcggttcctggcaccattcctccaatttccaacagcacaactagta 154  Q
    |||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||    
T  23618693 attggggagacactcggttcctggcatcgttcctccaatttccaacagcacaactagta 23618751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 38 - 154
Target Start/End: Complemental strand, 23626871 - 23626751
Alignment:
Q  38 aattggttgatattaaaaagagatgattcgagttacct----gcatttgagatttgatgacgattggggagacactcggttcctggcaccattcctccaa 133  Q
    |||||||||||||||||| ||||| ||| || ||||||    |||||||||||||||||| |||||||||||||||||||| |||||||| |||||||||    
T  23626871 aattggttgatattaaaatgagattatttgatttacctatttgcatttgagatttgatgatgattggggagacactcggttgctggcaccgttcctccaa 23626772  T
Q  134 tttccaacagcacaactagta 154  Q
    |||||||||||||||||||||    
T  23626771 tttccaacagcacaactagta 23626751  T

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Target: chr1; HSP #8
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 38 - 154
Target Start/End: Complemental strand, 23708597 - 23708477
Alignment:
Q  38 aattggttgatattaaaaagagatgattcgagttacct----gcatttgagatttgatgacgattggggagacactcggttcctggcaccattcctccaa 133  Q
    |||||||||||||||||| ||||| ||| || ||||||    |||||||||||||||||| |||||||||||||||||||| |||||||| |||||||||    
T  23708597 aattggttgatattaaaatgagattatttgatttacctatttgcatttgagatttgatgatgattggggagacactcggttgctggcaccgttcctccaa 23708498  T
Q  134 tttccaacagcacaactagta 154  Q
    |||||||||||||||||||||    
T  23708497 tttccaacagcacaactagta 23708477  T

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Target: chr1; HSP #9
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 219 - 314
Target Start/End: Complemental strand, 23626676 - 23626578
Alignment:
Q  219 caaccggttgtttaatgatgttagagaatcaactaaaatctctcaaataca---tgaactatgaggaaagctcaatgcatcctccaaaataaaaagaaa 314  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||   | |||||||||||||||||| | ||||||||||||||||||||||    
T  23626676 caaccggttgtttaatgatgttagagaatcaactaaaatctctcaaatacacagtcaactatgaggaaagctcactacatcctccaaaataaaaagaaa 23626578  T

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Target: chr1; HSP #10
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 219 - 314
Target Start/End: Complemental strand, 23708402 - 23708304
Alignment:
Q  219 caaccggttgtttaatgatgttagagaatcaactaaaatctctcaaataca---tgaactatgaggaaagctcaatgcatcctccaaaataaaaagaaa 314  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||   | |||||||||||||||||| | ||||||||||||||||||||||    
T  23708402 caaccggttgtttaatgatgttagagaatcaactaaaatctctcaaatacacagtcaactatgaggaaagctcactacatcctccaaaataaaaagaaa 23708304  T

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Target: chr3 (Bit Score: 89; Significance: 9e-43; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 224 - 398
Target Start/End: Original strand, 52806782 - 52806962
Alignment:
Q  224 ggttgtttaatgatgttagagaatcaactaaaatctctcaaataca---tgaactatgaggaaagctcaatgcatcctccaaaataaaaagaaaatctgc 320  Q
    ||||| ||| ||||||||||||||||||||| ||||||||||||||   | || |  ||||| |||||| ||||||||||||||||||||||||| ||||    
T  52806782 ggttgcttattgatgttagagaatcaactaatatctctcaaatacacagttaattcagaggacagctcattgcatcctccaaaataaaaagaaaacctgc 52806881  T
Q  321 ---aagttattatctactcggcaaggaaatagaattaacagagatgaagtgctaatgtatcaaatggaatgaagggacaag 398  Q
       |||||||||||| || ||||||||||| ||||||||||||||||||| ||||||||||| |||||||||||| |||||    
T  52806882 tgcaagttattatctgcttggcaaggaaatggaattaacagagatgaagtactaatgtatcacatggaatgaaggcacaag 52806962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 225 - 375
Target Start/End: Complemental strand, 54141351 - 54141198
Alignment:
Q  225 gttgtttaatgatgttagagaatcaactaaaatctctcaaatacatg---aactatgaggaaagctcaatgcatcctccaaaataaaaagaaaatctgca 321  Q
    |||| ||| ||||||| |||||||||||||||||||||||||||| |   ||||  |||||||| ||| |||||||||||||  ||||||||||||||||    
T  54141351 gttgcttattgatgttggagaatcaactaaaatctctcaaatacacggtcaactcagaggaaagatcattgcatcctccaaacgaaaaagaaaatctgca 54141252  T
Q  322 agttattatctactcggcaaggaaatagaattaacagagatgaagtgctaatgt 375  Q
    || |||||||| |||||||| ||||| ||||||||| ||||||||| |||||||    
T  54141251 aggtattatctgctcggcaaagaaatggaattaacaaagatgaagtactaatgt 54141198  T

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Target: chr3; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 14 - 119
Target Start/End: Complemental strand, 53287104 - 53286991
Alignment:
Q  14 aatctagaataaaaacattcatacaattggttgatattaaaaagagatgattcgagttacc--------tgcatttgagatttgatgacgattggggaga 105  Q
    |||||||||||||||| | ||||||||||||||| ||||||||||||||||| ||||||||        ||||||||   ||||||||||||||||||||    
T  53287104 aatctagaataaaaacgtacatacaattggttgaaattaaaaagagatgatttgagttacctgtttgtttgcatttgtactttgatgacgattggggaga 53287005  T
Q  106 cactcggttcctgg 119  Q
    ||||||||| ||||    
T  53287004 cactcggttgctgg 53286991  T

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Target: chr3; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 12 - 75
Target Start/End: Complemental strand, 54141959 - 54141896
Alignment:
Q  12 acaatctagaataaaaacattcatacaattggttgatattaaaaagagatgattcgagttacct 75  Q
    |||||||||||||||||||| ||||||||||||||| ||||||||||||||||| |||||||||    
T  54141959 acaatctagaataaaaacatacatacaattggttgaaattaaaaagagatgatttgagttacct 54141896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 52806560 - 52806635
Alignment:
Q  1 aacaaagtaagacaatctagaataaaaacattcatacaattggttgatatt-aaaaagagatgattcgagttacct 75  Q
    ||||||||| |||| |||||||||||||||| ||||||||||||||||||| |||||||||||||| ||| |||||    
T  52806560 aacaaagtatgacactctagaataaaaacatgcatacaattggttgatattaaaaaagagatgatttgaggtacct 52806635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 339 - 398
Target Start/End: Original strand, 52806989 - 52807048
Alignment:
Q  339 caaggaaatagaattaacagagatgaagtgctaatgtatcaaatggaatgaagggacaag 398  Q
    ||||||||| ||||||||||||||||| | ||||||||||| |||||||||||| |||||    
T  52806989 caaggaaatggaattaacagagatgaaatactaatgtatcacatggaatgaaggcacaag 52807048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 14 - 120
Target Start/End: Original strand, 11842635 - 11842749
Alignment:
Q  14 aatctagaataaaaacattcatacaattggttgatattaaaaagagatgattcgagttacc--------tgcatttgagatttgatgacgattggggaga 105  Q
    |||||||||||||||| | ||||||||||||||| ||||||||||||||||| ||||||||        ||||||||   ||||||||||||||||||||    
T  11842635 aatctagaataaaaacgtacatacaattggttgaaattaaaaagagatgatttgagttacctgtttgtttgcatttgtactttgatgacgattggggaga 11842734  T
Q  106 cactcggttcctggc 120  Q
    ||||||||| |||||    
T  11842735 cactcggttgctggc 11842749  T

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