View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9652_high_4 (Length: 401)

Name: NF9652_high_4
Description: NF9652
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9652_high_4
NF9652_high_4
[»] chr3 (24 HSPs)
chr3 (18-226)||(10516664-10516872)
chr3 (136-283)||(13844336-13844484)
chr3 (100-226)||(10657964-10658091)
chr3 (18-124)||(11782664-11782770)
chr3 (281-365)||(13844105-13844186)
chr3 (281-388)||(11782995-11783101)
chr3 (233-281)||(11782775-11782823)
chr3 (137-206)||(10183408-10183478)
chr3 (169-204)||(10104080-10104115)
chr3 (169-204)||(10214952-10214987)
chr3 (169-204)||(10223693-10223728)
chr3 (171-204)||(10031184-10031217)
chr3 (167-199)||(10256544-10256576)
chr3 (171-202)||(9837889-9837920)
chr3 (171-202)||(9848767-9848798)
chr3 (169-204)||(10076350-10076385)
chr3 (167-202)||(10180432-10180467)
chr3 (175-226)||(10662679-10662730)
chr3 (130-223)||(10541088-10541182)
chr3 (171-200)||(10126129-10126158)
chr3 (47-92)||(10658086-10658130)
chr3 (167-199)||(10028874-10028906)
chr3 (167-199)||(10123775-10123807)
chr3 (18-77)||(10526683-10526743)
[»] chr5 (1 HSPs)
chr5 (169-204)||(26793535-26793570)
[»] chr4 (1 HSPs)
chr4 (18-68)||(17853605-17853655)


Alignment Details
Target: chr3 (Bit Score: 126; Significance: 7e-65; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 18 - 226
Target Start/End: Complemental strand, 10516872 - 10516664
Alignment:
Q  18 caaagctgcagccatgtttgattggtaaagtaaattatcaaggaagaaagttgtaaatgaagttttgagagaaatttgttgaagaaatgtgaatggatac 117  Q
    |||||||||||||||||||| |||||||||||| ||| |||||||||||||| ||||||| |||||||||||| ||| ||||||| ||||||||||||||    
T  10516872 caaagctgcagccatgtttgcttggtaaagtaagttagcaaggaagaaagtt-taaatgatgttttgagagaatttttttgaagatatgtgaatggatac 10516774  T
Q  118 agtaatgtttttagatggtaaaggtagattcaagaagacttatttg-tgcgtaagaaacaaaatttgaaagctggaaagcaaagctcacaaatggttaat 216  Q
    |||||||||||| ||||||||||||||| ||| ||||||||||||| |||||||||||||||||||||||||||||||||| || |||  | || ||| |    
T  10516773 agtaatgtttttggatggtaaaggtagactcaggaagacttatttgttgcgtaagaaacaaaatttgaaagctggaaagcataggtcatcagtgattact 10516674  T
Q  217 ggacccacat 226  Q
    ||||||||||    
T  10516673 ggacccacat 10516664  T

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Target: chr3; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 136 - 283
Target Start/End: Original strand, 13844336 - 13844484
Alignment:
Q  136 taaaggtagattcaagaagacttatttgt-gcgtaagaaacaaaatttgaaagctggaaagcaaagctcacaaatggttaatggacccacatatggaaaa 234  Q
    |||||||||| |||||||||||||||||| | ||||||||||||||||||||||||||||||| |||||| |||||||||||| ||||||||| ||||||    
T  13844336 taaaggtagactcaagaagacttatttgttgtgtaagaaacaaaatttgaaagctggaaagcatagctcataaatggttaatgaacccacatagggaaaa 13844435  T
Q  235 gagtaaacactgtccaattaaaaattgccattggcatttgtggacttaa 283  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||    
T  13844436 gagtaaacaccgtccaattaaaaattgccattggcatttgtggacttaa 13844484  T

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Target: chr3; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 100 - 226
Target Start/End: Complemental strand, 10658091 - 10657964
Alignment:
Q  100 agaaatgtgaatggatacagtaatgtttttagatggtaaaggtagattcaagaagacttatttg-tgcgtaagaaacaaaatttgaaagctggaaagcaa 198  Q
    |||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |||||||||||||||    
T  10658091 agaaatgtgaatggatacagtaatgtttttggatggtaaaggtagactcaagaagacttatttgttgcgtaagaaacaaaatttaaaagctggaaagcaa 10657992  T
Q  199 agctcacaaatggttaatggacccacat 226  Q
    || |||  | || |||||||||||||||    
T  10657991 aggtcatcagtgattaatggacccacat 10657964  T

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Target: chr3; HSP #4
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 18 - 124
Target Start/End: Original strand, 11782664 - 11782770
Alignment:
Q  18 caaagctgcagccatgtttgattggtaaagtaaattatcaaggaagaaagttgtaaatgaagttttgagagaaatttgttgaagaaatgtgaatggatac 117  Q
    |||||||||||||||||||| |||||||||||||||| |||||||| ||||||||||| |||||||||||||| ||| ||||||||||||||||||||||    
T  11782664 caaagctgcagccatgtttgcttggtaaagtaaattagcaaggaagtaagttgtaaataaagttttgagagaatttttttgaagaaatgtgaatggatac 11782763  T
Q  118 agtaatg 124  Q
    |||||||    
T  11782764 agtaatg 11782770  T

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Target: chr3; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 281 - 365
Target Start/End: Original strand, 13844105 - 13844186
Alignment:
Q  281 taataagtaaataaatcattttaagaaatatataattaccaagacgtgtattgagaataccaaatagttgcaaaatgcatttgat 365  Q
    |||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| ||||  ||||||||||||    
T  13844105 taataagtaaataaatcaatttaagaa-tatataattaccaagacgtgtattgagaataccaaataattgc--aatgcatttgat 13844186  T

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Target: chr3; HSP #6
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 281 - 388
Target Start/End: Original strand, 11782995 - 11783101
Alignment:
Q  281 taataagtaaataaatcattttaagaaatatataattaccaagacgtgtattgag-aataccaaatagttgcaaaatgcatttgatgcctttccacaagt 379  Q
    ||||||||||||||||||  |||||||||||||||||| ||||||||||||| || |||||| |||| ||||  |||| ||||| ||| |||||||||||    
T  11782995 taataagtaaataaatcaaattaagaaatatataattagcaagacgtgtattaagaaatacctaataattgc--aatgtatttgctgcttttccacaagt 11783092  T
Q  380 ctttcatct 388  Q
    |||||||||    
T  11783093 ctttcatct 11783101  T

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Target: chr3; HSP #7
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 233 - 281
Target Start/End: Original strand, 11782775 - 11782823
Alignment:
Q  233 aagagtaaacactgtccaattaaaaattgccattggcatttgtggactt 281  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  11782775 aagagtaaacactgtccaattaaaaattgccattggcatttgtggactt 11782823  T

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Target: chr3; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 137 - 206
Target Start/End: Complemental strand, 10183478 - 10183408
Alignment:
Q  137 aaaggtagattcaagaagacttatttgt-gcgtaagaaacaaaatttgaaagctggaaagcaaagctcaca 206  Q
    ||||||||| |||||||||||||||||| | ||| ||||| ||||||||||||||||||||||||||||||    
T  10183478 aaaggtagactcaagaagacttatttgttgggtatgaaactaaatttgaaagctggaaagcaaagctcaca 10183408  T

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Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 169 - 204
Target Start/End: Complemental strand, 10104115 - 10104080
Alignment:
Q  169 aagaaacaaaatttgaaagctggaaagcaaagctca 204  Q
    ||||||||||||||||||||||||||||||||||||    
T  10104115 aagaaacaaaatttgaaagctggaaagcaaagctca 10104080  T

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Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 169 - 204
Target Start/End: Complemental strand, 10214987 - 10214952
Alignment:
Q  169 aagaaacaaaatttgaaagctggaaagcaaagctca 204  Q
    ||||||||||||||||||||||||||||||||||||    
T  10214987 aagaaacaaaatttgaaagctggaaagcaaagctca 10214952  T

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Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 169 - 204
Target Start/End: Complemental strand, 10223728 - 10223693
Alignment:
Q  169 aagaaacaaaatttgaaagctggaaagcaaagctca 204  Q
    ||||||||||||||||||||||||||||||||||||    
T  10223728 aagaaacaaaatttgaaagctggaaagcaaagctca 10223693  T

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Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 171 - 204
Target Start/End: Complemental strand, 10031217 - 10031184
Alignment:
Q  171 gaaacaaaatttgaaagctggaaagcaaagctca 204  Q
    ||||||||||||||||||||||||||||||||||    
T  10031217 gaaacaaaatttgaaagctggaaagcaaagctca 10031184  T

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Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 167 - 199
Target Start/End: Complemental strand, 10256576 - 10256544
Alignment:
Q  167 gtaagaaacaaaatttgaaagctggaaagcaaa 199  Q
    |||||||||||||||||||||||||||||||||    
T  10256576 gtaagaaacaaaatttgaaagctggaaagcaaa 10256544  T

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Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 171 - 202
Target Start/End: Complemental strand, 9837920 - 9837889
Alignment:
Q  171 gaaacaaaatttgaaagctggaaagcaaagct 202  Q
    ||||||||||||||||||||||||||||||||    
T  9837920 gaaacaaaatttgaaagctggaaagcaaagct 9837889  T

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Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 171 - 202
Target Start/End: Complemental strand, 9848798 - 9848767
Alignment:
Q  171 gaaacaaaatttgaaagctggaaagcaaagct 202  Q
    ||||||||||||||||||||||||||||||||    
T  9848798 gaaacaaaatttgaaagctggaaagcaaagct 9848767  T

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Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 169 - 204
Target Start/End: Complemental strand, 10076385 - 10076350
Alignment:
Q  169 aagaaacaaaatttgaaagctggaaagcaaagctca 204  Q
    ||||||||||||||||||||||||||| ||||||||    
T  10076385 aagaaacaaaatttgaaagctggaaagtaaagctca 10076350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 167 - 202
Target Start/End: Complemental strand, 10180467 - 10180432
Alignment:
Q  167 gtaagaaacaaaatttgaaagctggaaagcaaagct 202  Q
    |||||||||||||||||||||||||| |||||||||    
T  10180467 gtaagaaacaaaatttgaaagctggagagcaaagct 10180432  T

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Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 175 - 226
Target Start/End: Complemental strand, 10662730 - 10662679
Alignment:
Q  175 caaaatttgaaagctggaaagcaaagctcacaaatggttaatggacccacat 226  Q
    |||||||||||||||||||||||||| |||  | || |||||||||||||||    
T  10662730 caaaatttgaaagctggaaagcaaagttcatcagtgattaatggacccacat 10662679  T

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Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 130 - 223
Target Start/End: Complemental strand, 10541182 - 10541088
Alignment:
Q  130 agatggtaaaggtagattcaagaagacttatttgtgcg-taagaaacaaaatttgaaagctggaaagcaaagctcacaaatggttaatggaccca 223  Q
    |||| ||||| ||||| |||||||||||| |||||  | ||||||||||| || |||||||||||| ||| ||| || | || ||||||||||||    
T  10541182 agatagtaaacgtagactcaagaagacttgtttgttaggtaagaaacaaagttagaaagctggaaaacaaggcttaccattgtttaatggaccca 10541088  T

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Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 200
Target Start/End: Complemental strand, 10126158 - 10126129
Alignment:
Q  171 gaaacaaaatttgaaagctggaaagcaaag 200  Q
    ||||||||||||||||||||||||||||||    
T  10126158 gaaacaaaatttgaaagctggaaagcaaag 10126129  T

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Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 92
Target Start/End: Complemental strand, 10658130 - 10658086
Alignment:
Q  47 gtaaattatcaaggaagaaagttgtaaatgaagttttgagagaaat 92  Q
    |||||||| |||||||||||||| ||||||| ||||||||||||||    
T  10658130 gtaaattagcaaggaagaaagtt-taaatgatgttttgagagaaat 10658086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 167 - 199
Target Start/End: Complemental strand, 10028906 - 10028874
Alignment:
Q  167 gtaagaaacaaaatttgaaagctggaaagcaaa 199  Q
    |||||||||||||||||||||||| ||||||||    
T  10028906 gtaagaaacaaaatttgaaagctgaaaagcaaa 10028874  T

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Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 167 - 199
Target Start/End: Complemental strand, 10123807 - 10123775
Alignment:
Q  167 gtaagaaacaaaatttgaaagctggaaagcaaa 199  Q
    ||||||||||| |||||||||||||||||||||    
T  10123807 gtaagaaacaacatttgaaagctggaaagcaaa 10123775  T

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Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 77
Target Start/End: Complemental strand, 10526743 - 10526683
Alignment:
Q  18 caaagctgcagccatgtttgattggtaaagtaaattatc-aaggaagaaagttgtaaatga 77  Q
    ||||||||||||||| | ||||||||||||||||  | | |||||| ||||||||||||||    
T  10526743 caaagctgcagccatatctgattggtaaagtaaagcagcaaaggaaaaaagttgtaaatga 10526683  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 169 - 204
Target Start/End: Complemental strand, 26793570 - 26793535
Alignment:
Q  169 aagaaacaaaatttgaaagctggaaagcaaagctca 204  Q
    ||||||||||||||||||||||||||||||||||||    
T  26793570 aagaaacaaaatttgaaagctggaaagcaaagctca 26793535  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 68
Target Start/End: Original strand, 17853605 - 17853655
Alignment:
Q  18 caaagctgcagccatgtttgattggtaaagtaaattatcaaggaagaaagt 68  Q
    ||||| ||||||||| ||||||||||||||||||  | |||||||||||||    
T  17853605 caaagttgcagccatatttgattggtaaagtaaagcagcaaggaagaaagt 17853655  T

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