View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9652_low_1 (Length: 681)
Name: NF9652_low_1
Description: NF9652
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9652_low_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 639; Significance: 0; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 639; E-Value: 0
Query Start/End: Original strand, 1 - 663
Target Start/End: Complemental strand, 36206802 - 36206140
Alignment:
| Q |
1 |
atgtacaatcaagggaaatctattattgaaaaattaatactttcatgcttattagaggagggtattggttctgaattaaactttttgactggttggcata |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
36206802 |
atgtacaatcaagggaaatctattattgaaaaattaatactttcatgcctattagaggagggtattggttctgaattaaactttttgactggttggtata |
36206703 |
T |
|
| Q |
101 |
aaaggaaaattaagatgcatgatgtgattagagatatggcactatggttagctcgagatgaagatgaaaacaaagacaaaattgtagttcaaggggaagc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36206702 |
aaaggaaaattaagatgcatgatgtgattagagatatggcactatggttagctcgagatgaagatgaaaacaaagacaaaattgtagttcaaggggaagc |
36206603 |
T |
|
| Q |
201 |
aatttccatatcggaaatggattctaaaagattgaatgttgtagagaggatttcaataataactagggataccaagttgttggaagaaagctggaagata |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36206602 |
aatttccatatcggaaatggattctaaaagattgaatgttgtagagaggatttcaataataactagggataccaagttgttggaagaaagctggaagata |
36206503 |
T |
|
| Q |
301 |
gcaacttgtcctaatctcatcaccctttgtttaaatttaggagagggtcaccctttatcattaaatttccaatccataaaaaggctgagagtgttggatt |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36206502 |
ccaacttgtcctaatctcatcaccctttgtttaaatttaggagagggtcaccctttatcattaaatttccaatccataaaaaggctgagagtgttggatt |
36206403 |
T |
|
| Q |
401 |
tatcaaggaatcgttgtataatcaatctgtcctcagaaataggcgagttaatcaactctgaattccttaacctctcaggatcaaaagtaattgagttgcc |
500 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
36206402 |
tatcaaggaatcgttgtataatcaatctgtcctcagaaataggagagttaatcaactctgaattccttaacctctcaggatcaaaagtacttgagttgcc |
36206303 |
T |
|
| Q |
501 |
tattgcattgaagaagttgaaaaagttgagggtatttcttatggatggcatgatttgcaccagcaccagcagtaaccccattcctttggaagtgatagaa |
600 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36206302 |
tattgcattgaagaagttgaaaaagttgagggtatttcttatggatggcatgacttgcaccagcaccagcagtaaccccattcctttggaagtgatagaa |
36206203 |
T |
|
| Q |
601 |
agtcttgaacaattaaaggtgtttagatttagtcgaggtgatgacattgagaacactgtacaa |
663 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36206202 |
agtcttgaacaattaaaggtgtttagatttagtcgaggtgatgacattgagaacactgtacaa |
36206140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 151; E-Value: 2e-79
Query Start/End: Original strand, 11 - 340
Target Start/End: Complemental strand, 36232113 - 36231790
Alignment:
| Q |
11 |
aagggaaatctattattgaaaaattaatactttcatgcttattagaggagggtattggttctgaattaaactttttgactggttggcataaaaggaaaat |
110 |
Q |
| |
|
|||||||| |||||||||||||||||||| |||||||| |||||||||||||||||||| ||| | | ||| || || |||||||| | |||| ||| |
|
|
| T |
36232113 |
aagggaaaactattattgaaaaattaatagtttcatgcctattagaggagggtattggtactggaattaacattgtggctggttggaggagtaggagaat |
36232014 |
T |
|
| Q |
111 |
taagatgcatgatgtgattagagatatggcactatggttagctcgagatgaagatgaaaacaaagacaaaattgtagttcaaggggaagcaatttccata |
210 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
36232013 |
taagatgcatgatgtgattagagacatggcactgtggttaggtcgagatgaagatgaaaacaaagacaaaattgtagttcaaagggaagcaatttccatg |
36231914 |
T |
|
| Q |
211 |
tcggaaatggattctaaaagattgaatgttgtagagaggatttcaataataactag---ggataccaagttgttggaagaaagctggaagatagcaactt |
307 |
Q |
| |
|
||||||||| ||| | ||||||| ||||||||| ||||||||||| |||||||||| |||| | | ||||||||| |||| || |||||| |
|
|
| T |
36231913 |
tcggaaatgaattttgaaagattaaatgttgtaaagaggatttcagtaataactaggttggattcaa---------aagaaagcttgaaggtaccaactt |
36231823 |
T |
|
| Q |
308 |
gtcctaatctcatcaccctttgtttaaatttag |
340 |
Q |
| |
|
|||| |||||||||||||||||||||| ||||| |
|
|
| T |
36231822 |
gtccaaatctcatcaccctttgtttaagtttag |
36231790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 143; E-Value: 9e-75
Query Start/End: Original strand, 354 - 633
Target Start/End: Complemental strand, 36231755 - 36231479
Alignment:
| Q |
354 |
tttatcattaaatttccaatccataaaaaggctgagagtgttggatttatcaaggaatcgttgtataatcaatctgtcctcagaaataggcgagttaatc |
453 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| ||| |||||||| || |||||||||| ||||||||||||| | |
|
|
| T |
36231755 |
tttatcattaaatttccaatccataaaaaagctgagagtattggatttatcaagggatctttgtataaagaacctgtcctcaggaataggcgagttagtg |
36231656 |
T |
|
| Q |
454 |
aactctgaattccttaacctctcaggatcaaaagtaattgagttgcctattgcattgaagaagttgaaaaagttgagggtatttcttatggatggcatg- |
552 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | |||||||||| ||| |
|
|
| T |
36231655 |
aacttggaattccttaacctctcaggatcaaaagtatttgagttgcctattgcattgaagaagttgaaaaagttgagggtactccttatggatgatatgt |
36231556 |
T |
|
| Q |
553 |
atttgcaccagcaccagcagtaaccccattcctttggaagtgatagaaagtcttgaacaattaaaggtgtttagatttagt |
633 |
Q |
| |
|
||| || | | || ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36231555 |
attactacgatta--tgc--taaaatcattcctttggaagtgatagaaagtcttgaacaattaaaggtgtttagatttagt |
36231479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 123; E-Value: 8e-63
Query Start/End: Original strand, 103 - 265
Target Start/End: Complemental strand, 36222113 - 36221951
Alignment:
| Q |
103 |
aggaaaattaagatgcatgatgtgattagagatatggcactatggttagctcgagatgaagatgaaaacaaagacaaaattgtagttcaaggggaagcaa |
202 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| |||| ||||||||||||||| ||||| |||||||| |
|
|
| T |
36222113 |
aggataattaagatgcatgatgtgattagagatatggcgctatggttagctcgagatgtagataaaaagaaagacaaaattgtacttcaaagggaagcat |
36222014 |
T |
|
| Q |
203 |
tttccatatcggaaatggattctaaaagattgaatgttgtagagaggatttcaataataacta |
265 |
Q |
| |
|
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36222013 |
tttccatgtctgaaatggattctaaaagattgaatgttgtagagaggatttcaataataacta |
36221951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 361 - 547
Target Start/End: Complemental strand, 36221864 - 36221678
Alignment:
| Q |
361 |
ttaaatttccaatccataaaaaggctgagagtgttggatttatcaaggaatcgttgtataatcaatctgtcctcagaaataggcgagttaatcaactctg |
460 |
Q |
| |
|
||||||||||||||||| |||||||| |||||||||||||||||||| ||| || | | || | || ||||||||||||||| |||||||||||| | |
|
|
| T |
36221864 |
ttaaatttccaatccatgaaaaggcttagagtgttggatttatcaagtaatgattttgtgattcaactctcctcagaaataggcaagttaatcaacttgg |
36221765 |
T |
|
| Q |
461 |
aattccttaacctctcaggatcaaaagtaattgagttgcctattgcattgaagaagttgaaaaagttgagggtatttcttatggatg |
547 |
Q |
| |
|
||||| |||| |||||| ||||||| ||| || ||||||| || ||||| |||||||||||||| ||||||||| | ||| |||||| |
|
|
| T |
36221764 |
aattcattaatctctcaagatcaaacgtatttcagttgccaatagcatttaagaagttgaaaaacttgagggtactccttttggatg |
36221678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 580 - 628
Target Start/End: Complemental strand, 36221651 - 36221603
Alignment:
| Q |
580 |
attcctttggaagtgatagaaagtcttgaacaattaaaggtgtttagat |
628 |
Q |
| |
|
||||||||||||||| | || |||||||||||||||||||||||||||| |
|
|
| T |
36221651 |
attcctttggaagtgttcgatagtcttgaacaattaaaggtgtttagat |
36221603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 67
Target Start/End: Complemental strand, 36222205 - 36222149
Alignment:
| Q |
11 |
aagggaaatctattattgaaaaattaatactttcatgcttattagaggagggtattg |
67 |
Q |
| |
|
|||||||| |||||||| |||||||||||||||||||| |||||||||| | ||||| |
|
|
| T |
36222205 |
aagggaaagctattattcaaaaattaatactttcatgcctattagaggatgatattg |
36222149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 633
Target Start/End: Original strand, 25474247 - 25474873
Alignment:
| Q |
1 |
atgtacaatcaagggaaatctattattgaaaaattaatactttcatgcttattagaggagggtattggttctgaattaaactttttgactggttggcata |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| | || |||| |||||| ||||||||||| | | |
|
|
| T |
25474247 |
atgtacaatcaagggaaatctattattgaaaaattaatactttcatgcctattagaggaggggattgttactaaatttaactttgtgactggttggtaca |
25474346 |
T |
|
| Q |
101 |
aaaggaaaattaagatgcatgatgtgattagagatatggcactatggttagctcgagatgaagatgaaaacaaagacaaaattgtagttcaaggggaagc |
200 |
Q |
| |
|
||| | ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25474347 |
gtagggtatttaagatgcatgatgtgattagagatatggcactatggttaactcgagatgaagatgaaaacaaagacaaaattgtagttcaaggggaagc |
25474446 |
T |
|
| Q |
201 |
aatttccatatcggaaatggattctaaaagattgaatgttgtagagaggatttcaataataacta---gggataccaagttgttggaagaaagctggaag |
297 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| | || ||||||||||||| |
|
|
| T |
25474447 |
aatttccatttcggaaatggattctaaaagattgaatgttgtagagaggatttcaataataagtacttgggattcaaa---------agaaagctggaag |
25474537 |
T |
|
| Q |
298 |
atagcaacttgtcctaatctcatcaccctttgtttaaatttagga---gag------ggtcaccctttatcattaaatttccaatccataaaaaggctga |
388 |
Q |
| |
|
||| |||||||||| |||||||| ||||||||||||||||||| | ||| | ||| |||||||| | ||||||||||||||||||| || || |
|
|
| T |
25474538 |
ataccaacttgtccgaatctcattaccctttgtttaaatttagaaatagagtatattgatcatgctttatcaatgaatttccaatccataaaaaagccga |
25474637 |
T |
|
| Q |
389 |
gagtgttggatttatcaaggaatcgttgtataatcaatctgtcctcagaaataggcgagttaatcaactctgaattccttaacctctcaggatcaaaagt |
488 |
Q |
| |
|
||||||||||||||||||||||||||| ||| | |||||||| |||||||||||||||||||||||| ||||||||||||||||||||| || ||| |
|
|
| T |
25474638 |
gagtgttggatttatcaaggaatcgttttatta---atctgtccgcagaaataggcgagttaatcaacttggaattccttaacctctcaggaacaggagt |
25474734 |
T |
|
| Q |
489 |
aattgagttgcctattgcattgaagaagttgaaaaagttgagggtatttcttatggatggcatgatttgcaccagcaccagcagt-aaccccattccttt |
587 |
Q |
| |
|
| ||| | |||||||||||||||||||||||||||| ||||||||||||||| ||||||| ||| || || | | ||| || ||||||| | |
|
|
| T |
25474735 |
atttgcgctgcctattgcattgaagaagttgaaaaacttgagggtatttcttttggatggtatgcttcgc-------cttgaagtcaaaaacattcctat |
25474827 |
T |
|
| Q |
588 |
ggaagtgatagaaagtcttgaacaattaaaggtgtttagatttagt |
633 |
Q |
| |
|
|||||||||||| ||||| |||||||||||||| |||||||||||| |
|
|
| T |
25474828 |
ggaagtgatagagagtctagaacaattaaaggtatttagatttagt |
25474873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 173; Significance: 1e-92; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 173; E-Value: 1e-92
Query Start/End: Original strand, 103 - 545
Target Start/End: Complemental strand, 9766519 - 9766071
Alignment:
| Q |
103 |
aggaaaattaagatgcatgatgtgattagagatatggcactatggttagctcgagatgaagatgaaaacaaagacaaaattgtagttcaaggggaagcaa |
202 |
Q |
| |
|
||||||||||| ||||| || |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
9766519 |
aggaaaattaaaatgcacgacatgattagagatatggcactatggttaactcgagatgaagatgaaaacaaagacaaaattgtagttcaaagggaagcat |
9766420 |
T |
|
| Q |
203 |
tttccatatcggaaatggattctaaaagattgaatgttgtagagaggatttcaataataactagggataccaagttgttggaagaaagctggaagatagc |
302 |
Q |
| |
|
||| || || ||||||||||||| ||||||||||||||||||||||||||||||||||| | || | | || ||||||||||||||| || | |
|
|
| T |
9766419 |
cttcaatgtcagaaatggattctagaagattgaatgttgtagagaggatttcaataataaacactga---ctggaatttagaagaaagctggaaggtacc |
9766323 |
T |
|
| Q |
303 |
aacttgtcctaatctcatcaccctttgtttaaatttaggagagggt-------cacc--ctttatcattaaatttccaatccataaaaaggctgagagtg |
393 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||| | || | | || |||| |||||||||||||||||| |||||| |||||||||| |
|
|
| T |
9766322 |
aacttgtccaaatctcatcaccctttgtttaaatttagaaatggattttgatgcccctgctttttcattaaatttccaatccttaaaaaagctgagagtg |
9766223 |
T |
|
| Q |
394 |
ttggatttatcaaggaatcgttgtataatcaatctgtcctcagaaataggcgagttaatcaactctgaattccttaacctctcaggatcaaaagtaattg |
493 |
Q |
| |
|
|||||||||||| | | || | ||||||||| ||||||||||||||||||||||||||| |||||||||||||| || |||| ||||| || |
|
|
| T |
9766222 |
ttggatttatcatatagtgattcttctatcaatctgccctcagaaataggcgagttaatcaacttggaattccttaacctttccaaatcagaagtattta |
9766123 |
T |
|
| Q |
494 |
agttgcctattgcattgaagaagttgaaaaagttgagggtatttcttatgga |
545 |
Q |
| |
|
|||||||||||| |||||||||||||||| |||||||||||||||||||| |
|
|
| T |
9766122 |
cattgcctattgcaatgaagaagttgaaaaacttgagggtatttcttatgga |
9766071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 585 - 631
Target Start/End: Complemental strand, 9766034 - 9765988
Alignment:
| Q |
585 |
tttggaagtgatagaaagtcttgaacaattaaaggtgtttagattta |
631 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9766034 |
tttggaagtgatagaaagtcttgaacaattaaaggtgtttagattta |
9765988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 9766621 - 9766555
Alignment:
| Q |
1 |
atgtacaatcaagggaaatctattattgaaaaattaatactttcatgcttattagaggagggtattg |
67 |
Q |
| |
|
|||||||| |||||||||||||| ||| |||||||| ||||||||||| |||||||||||| ||||| |
|
|
| T |
9766621 |
atgtacaaccaagggaaatctataattcaaaaattactactttcatgcctattagaggaggatattg |
9766555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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