View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9652_low_12 (Length: 352)
Name: NF9652_low_12
Description: NF9652
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9652_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 293; Significance: 1e-164; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 1 - 336
Target Start/End: Original strand, 4304682 - 4305020
Alignment:
| Q |
1 |
agcaaaggtgacttggcgcataaaataatttaaatcaggaatttagctgaggaatggcagaaaagttacctgatttgcggtcatacttaatgcctcggat |
100 |
Q |
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|||| ||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4304682 |
agcagaggtgacttggtgcataaaataatttaattcaggaatttagctgaggaatggcagaaaagttacctgatttgcggtcatacttaatgcctcggat |
4304781 |
T |
|
| Q |
101 |
gtgggatattttgggccaaatttgcgggtgtttcatgaggcacccttcttccgacagaggacatctagcgatttgaagttttattagagaagcaggaagc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
4304782 |
gtgggatattttgggccaaatttgcgggtgtttcatgaggcacccttcttccaacagaggacatctagcgatttgaagttttattagagaagcaggcagc |
4304881 |
T |
|
| Q |
201 |
ctttctcccaccatattctccagct---cccagtcattaattgttaattgttggagggatgttaggtggagaagctctgtacactccaacgtgtgcaaac |
297 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4304882 |
ctttctcccaccatattctccagcttggggcagtcattaattgttaattgttggagggatgttaggtggagaagctctgtacactccaacgtgtgcaaac |
4304981 |
T |
|
| Q |
298 |
ttgacatttcccatagagctagggaggtaagggaggagg |
336 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |||| |
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| T |
4304982 |
ttgacatttcccatagagctagggaggtaagggaagagg |
4305020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 86 - 333
Target Start/End: Original strand, 4311808 - 4312058
Alignment:
| Q |
86 |
cttaatgcctcggatgtgggatattttgggccaaatttgcgggtgtttcatgaggcacccttcttccgacagaggacatctagcgatttgaagttttatt |
185 |
Q |
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||||||||||||||| ||||||||||||||||||||||| |||||||||||| |||||| ||||||| ||||||||||||||||||||||||||| ||| |
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| T |
4311808 |
cttaatgcctcggatatgggatattttgggccaaatttgtgggtgtttcatgcggcaccgttcttccaacagaggacatctagcgatttgaagttcgatt |
4311907 |
T |
|
| Q |
186 |
agagaagcaggaagcctttctcccaccatattctccagct---cccagtcattaattgttaattgttggagggatgttaggtggagaagctctgtacact |
282 |
Q |
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| T |
4311908 |
agagaagcaggcaacctttctccttccagagtctccagcttggggcagtactcaattgttaatttctcgagggacgtgaggtggagaagccccatgcact |
4312007 |
T |
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| Q |
283 |
ccaacgtgtgcaaacttgacatttcccatagagctagggaggtaagggagg |
333 |
Q |
| |
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|||| ||||||| ||||| | ||||||||| |||||||||| ||||| |
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| T |
4312008 |
ccaatgtgtgcaggcttgaaaaagaccatagagcaagggaggtaatggagg |
4312058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 90 - 333
Target Start/End: Complemental strand, 41936126 - 41935880
Alignment:
| Q |
90 |
atgcctcggatgtgggatattttgggccaaatttgcgggtgtttcatgaggcacccttcttccgacagaggacatctagcgatttgaagttttattagag |
189 |
Q |
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||||||| |||| |||| |||||||||||||||||||||||||||||| |||||| ||||||| ||| ||||||| | | |||| |||||||||||||| |
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| T |
41936126 |
atgcctctgatgagggaaattttgggccaaatttgcgggtgtttcatgcggcacctttcttccaacaaaggacattcaacaatttcaagttttattagag |
41936027 |
T |
|
| Q |
190 |
aagcaggaagcctttctcccaccatattctccagc---tcccagtcattaattgttaattgttggagggatgttaggtggagaagctctgtacactccaa |
286 |
Q |
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||| ||| ||||||||||| ||||| |||||||| ||||| | || |||||||||||||||||| | |||||||||||| | | |||||||| |
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| T |
41936026 |
aaggaggcagcctttctccttccatagtctccagcatgggacagtcttcaactgttaattgttggagggacttgaggtggagaagccccatgcactccaa |
41935927 |
T |
|
| Q |
287 |
cgtgtgcaaacttgacatttcccatagagctagggaggtaagggagg |
333 |
Q |
| |
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||||||| ||||| | ||||||| | |||||||||||||||| |
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| T |
41935926 |
tgtgtgcaggcttgaaaaagtccatagatccagggaggtaagggagg |
41935880 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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