View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9652_low_13 (Length: 296)
Name: NF9652_low_13
Description: NF9652
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9652_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 246; Significance: 1e-136; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 12 - 257
Target Start/End: Complemental strand, 4650815 - 4650570
Alignment:
| Q |
12 |
cagagacacaaaaattgtacaacaaactggtaaatcttggtgttaagattgcattcttaacaggaagaccactcaaacagaaggacattacagctaagaa |
111 |
Q |
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| T |
4650815 |
cagagacacaaaaattgtacaacaaactggtaaatcttggtgttaagattgcattcttaacaggaagaccactcaaacagaaggacattacagctaagaa |
4650716 |
T |
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| Q |
112 |
cttgaaagaagctggctaccacacatatgaaaagctaattttgaagtaagttttctaacattaattaattgttcataggagaaagtaattggaattatga |
211 |
Q |
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| T |
4650715 |
cttgaaagaagctggctaccacacatatgaaaagctaattttgaagtaagttttctaacattaattaattgttcataggagaaagtaattggaattatga |
4650616 |
T |
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| Q |
212 |
gtcataaccttctatatttacaatagagtatattcaatgtcatgat |
257 |
Q |
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| T |
4650615 |
gtcataaccttctatatttacaatagagtatattcaatgtcatgat |
4650570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 101 - 177
Target Start/End: Original strand, 23680683 - 23680759
Alignment:
| Q |
101 |
acagctaagaacttgaaagaagctggctaccacacatatgaaaagctaattttgaagtaagttttctaacattaatt |
177 |
Q |
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| T |
23680683 |
acagctaagaacttgaaacaagctggctaccacacatatgaaaagctaattttgaagtaagttttctaacattaatt |
23680759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 12 - 107
Target Start/End: Original strand, 23679499 - 23679594
Alignment:
| Q |
12 |
cagagacacaaaaattgtacaacaaactggtaaatcttggtgttaagattgcattcttaacaggaagaccactcaaacagaaggacattacagcta |
107 |
Q |
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| T |
23679499 |
cagagacacaaaaattgtacaacaaactggtaaatcttggtgtcaaatttgtgttcttaacaggaagaccactcaaacagaaggacattacggcta |
23679594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 21 - 116
Target Start/End: Complemental strand, 4646441 - 4646346
Alignment:
| Q |
21 |
aaaaattgtacaacaaactggtaaatcttggtgttaagattgcattcttaacaggaagaccactcaaacagaaggacattacagctaagaacttga |
116 |
Q |
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| T |
4646441 |
aaaaattgtacaataaattgttgtctcttggtatcaagattgcgttcttaacaggcagaccactcaaacagaaagaaattacagctaagaacttga |
4646346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 46 - 168
Target Start/End: Complemental strand, 41872660 - 41872538
Alignment:
| Q |
46 |
tcttggtgttaagattgcattcttaacaggaagaccactcaaacagaaggacattacagctaagaacttgaaagaagctggctaccacacatatgaaaag |
145 |
Q |
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||||||| | ||||||| ||||||||| |||||| || |||||||||| |||| ||||| ||||| |||| | ||||||||||| ||| ||||| |
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| T |
41872660 |
tcttggtatcaagattgtattcttaactggaagagcaaacaaacagaagaacataacagccaagaatttgagacttgctggctaccatacacgggaaaaa |
41872561 |
T |
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| Q |
146 |
ctaattttgaagtaagttttcta |
168 |
Q |
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||||||| |||||||||||||| |
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| T |
41872560 |
ctaatttgcaagtaagttttcta |
41872538 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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