View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9652_low_15 (Length: 216)
Name: NF9652_low_15
Description: NF9652
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9652_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 99; Significance: 5e-49; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 14 - 161
Target Start/End: Complemental strand, 41232267 - 41232120
Alignment:
| Q |
14 |
cagagacaaatacaatggccaccagcaacatgcaggatgtcaatgtgtacgagagcgaggagnnnnnnntactaaggatattaattattgacaacttatg |
113 |
Q |
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| T |
41232267 |
cagagacaaatacaatggccaccagcaacatgcaggatgtcaatgtgtacgagagcaaggagaaaaaaatactaaggacattaattatggacaacttatg |
41232168 |
T |
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| Q |
114 |
ttctttctgtgtgcaagatgaataaaatgcttttcttcctatttatag |
161 |
Q |
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| T |
41232167 |
ttttttctgtgtggaagatgaataaaatgctttgcttcctatatatag |
41232120 |
T |
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