View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9652_low_2 (Length: 577)
Name: NF9652_low_2
Description: NF9652
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9652_low_2 |
 | |
|
| [»] scaffold0074 (1 HSPs) |
| | |
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Alignment Details
Target: chr4 (Bit Score: 500; Significance: 0; HSPs: 14)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 500; E-Value: 0
Query Start/End: Original strand, 20 - 556
Target Start/End: Original strand, 48701819 - 48702357
Alignment:
| Q |
20 |
actgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaa |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48701819 |
actgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaa |
48701918 |
T |
|
| Q |
120 |
caaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctct--aaatacaaggagagtacaattacca |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| ||||| |
|
|
| T |
48701919 |
caaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaaatacca |
48702018 |
T |
|
| Q |
218 |
ctctctcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactatctaa |
317 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| |
|
|
| T |
48702019 |
ctctctcttataaataggagaatactaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttttctctcactatctaa |
48702118 |
T |
|
| Q |
318 |
acaagctttacttgttcttgtgttgttactgatttgggatgagtagaatggtgcaagggacatgctatttatactagtgaaagagtcatgccccaaccaa |
417 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
48702119 |
acaagctttacttgttcttgtgttgttactgatttgggatgagtagaatggtgcaagggacatgctatttatactagtgaaagagccatgccccaaccaa |
48702218 |
T |
|
| Q |
418 |
ttgcatttatggcagcgtgtgaattttcaactttgcatagtaactttccatgtgaacatagaaattacatgccaacatgttttactgccatgtgataaca |
517 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48702219 |
ttgcatttatggcagcgtgtggattttcaactttgcatagtaactttccatgtgaacatagaaattacatgccaacatgttttactgccatgtgataaca |
48702318 |
T |
|
| Q |
518 |
cttcaacaaaagtggctttaccactttcctgtgttcaca |
556 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48702319 |
cttcaacaaaagtggctttaccactttcctgtgttcaca |
48702357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 481; E-Value: 0
Query Start/End: Original strand, 22 - 558
Target Start/End: Original strand, 48697131 - 48697670
Alignment:
| Q |
22 |
tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca |
121 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48697131 |
tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagaagagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca |
48697230 |
T |
|
| Q |
122 |
aataaggggaaaaaa-ccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctct--aaatacaaggagagtacaattaccac |
218 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| |||||| |
|
|
| T |
48697231 |
aataaggggaaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaaataccac |
48697330 |
T |
|
| Q |
219 |
tctctcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactatctaaa |
318 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| |
|
|
| T |
48697331 |
tctctcttataaataggagaatactaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttttctctcactatctaaa |
48697430 |
T |
|
| Q |
319 |
caagctttacttgttcttgtgttgttactgatttgggatgagtagaatggtgcaagggacatgctatttatactagtgaaagagtcatgccccaaccaat |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
48697431 |
caagctttacttgttcttgtgttgttactgatttgggatgagtagaataatgcaagggacatgctatttatactagtgaaagagccatgccccaaccaat |
48697530 |
T |
|
| Q |
419 |
tgcatttatggcagcgtgtgaattttcaactttgcatagtaactttccatgtgaacatagaaattacatgccaacatgttttactgccatgtgataacac |
518 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48697531 |
tgcatttatggcagcatgtgaattttcaactttgcatagtaactttccatgtgaacatagaaattacatgccaacatgttttactgccatgtgataacac |
48697630 |
T |
|
| Q |
519 |
ttcaacaaaagtggctttaccactttcctgtgttcacaat |
558 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48697631 |
ttcaacaaaagtggctttaccactttcctgtgttcacaat |
48697670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 20 - 559
Target Start/End: Original strand, 30950181 - 30950739
Alignment:
| Q |
20 |
actgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaa |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30950181 |
actgttaggtaccagagtaacaaaatattatcacgcagctaaaataagataagagaaaagaggaactgaacacacaatattttacgtggaaacccctcaa |
30950280 |
T |
|
| Q |
120 |
caaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggac--ctctctaaatacaaggagagtacaattacca |
217 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| ||||||||||||| |
|
|
| T |
30950281 |
caaataa-gggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacagaacctctctctaaatacaaggaaagtacaattacca |
30950379 |
T |
|
| Q |
218 |
ctctctcttataaataggagaatacaa--actaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcacta-tc |
314 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| || |
|
|
| T |
30950380 |
ctctctcttataaataggagaatacaaacactaacactacctaggagaaacctcacaggagaaactaatttttctctctatatttttcctctctctattc |
30950479 |
T |
|
| Q |
315 |
ta-----aacaa---------gctttac-ttgttcttgtgttgttactgatttgggatgagtagaatggtgcaagggacatgctatttatactagtgaaa |
399 |
Q |
| |
|
|| ||||| | |||| ||||| | ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30950480 |
tactaagaacaagtagttgttgtgttactttgttatggtgttgttactaatttgggatgagtagaatggtgcaagggacatgctatttatactagtgaaa |
30950579 |
T |
|
| Q |
400 |
gagtcatgccccaaccaattgcatttatggcagcgtgtgaattttcaactttgcatagtaactttccatgtgaacatagaaattacatgccaacatgttt |
499 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30950580 |
gagccatgccccaaccaattgcatttatggcagcgtgtgaattttcaactttgcatagtaactttccatgtgaacatagaaattacatgccaacatgttt |
30950679 |
T |
|
| Q |
500 |
tactgccatgtgataacacttcaacaaaagtggctttaccactttcctgtgttcacaatt |
559 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30950680 |
tactgccatgtgataacacttcaacaaaagtggctttaccactttcctgtgttcacaatt |
30950739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 21 - 556
Target Start/End: Original strand, 30945476 - 30946030
Alignment:
| Q |
21 |
ctgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaac |
120 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30945476 |
ctgttaggtatcagagtaacaaaatattatcacgcagctaaaataagagaagagaaaagaggaactgaacacacaatattttacgtggaaacccctcaac |
30945575 |
T |
|
| Q |
121 |
aaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggac--ctctctaaatacaaggagagtacaattaccac |
218 |
Q |
| |
|
|||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| |
|
|
| T |
30945576 |
aaataa-gggaaaaaatcacggggcaagagtagagaactttcactaagtggaagaaattacagaacctctctctaaatacaaggagagtacaattaccac |
30945674 |
T |
|
| Q |
219 |
tctctcttataaataggagaatacaa--actaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcacta-tct |
315 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| ||| |
|
|
| T |
30945675 |
tctctcttataaataggagaatacaaacactaacactacctaggagaaacctcacaggagaaactaatttttctctctatatttttcctctctctattct |
30945774 |
T |
|
| Q |
316 |
a-----aacaa---------gctttac-ttgttcttgtgttgttactgatttgggatgagtagaatggtgcaagggacatgctatttatactagtgaaag |
400 |
Q |
| |
|
| ||||| | |||| ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30945775 |
actaagaacaagtagttgttgtgttactttgttctggtgttgttactaatttgggatgagtagaatggtgcaagggacatgctatttatactagtgaaag |
30945874 |
T |
|
| Q |
401 |
agtcatgccccaaccaattgcatttatggcagcgtgtgaattttcaactttgcatagtaactttccatgtgaacatagaaattacatgccaacatgtttt |
500 |
Q |
| |
|
|| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30945875 |
agccatgccccaaccaattgcatttatggcagcatgtgaattttcaactttgcatagtaactttccatgtgaacatagaaattacatgccaacatgtttt |
30945974 |
T |
|
| Q |
501 |
actgccatgtgataacacttcaacaaaagtggctttaccactttcctgtgttcaca |
556 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30945975 |
actgccatgtgataacacttcaacaaaagtggctttaccactttcctgtgttcaca |
30946030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 20 - 357
Target Start/End: Complemental strand, 42266222 - 42265883
Alignment:
| Q |
20 |
actgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaa |
119 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42266222 |
actgttagataccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaa |
42266123 |
T |
|
| Q |
120 |
caaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacct--ctctaaatacaaggagagtacaattacca |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
42266122 |
caaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattacca |
42266023 |
T |
|
| Q |
218 |
ctctctcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactatctaa |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| ||||||||||||||||||||||||||||| |
|
|
| T |
42266022 |
ctctctcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaagctatttttcctctctatattttttctctcactatctaa |
42265923 |
T |
|
| Q |
318 |
acaagctttacttgttcttgtgttgttactgatttgggat |
357 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42265922 |
acaagctttacttgttcttgtgttgttactgatttgggat |
42265883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 20 - 357
Target Start/End: Complemental strand, 42270941 - 42270602
Alignment:
| Q |
20 |
actgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaa |
119 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42270941 |
actgttagataccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaa |
42270842 |
T |
|
| Q |
120 |
caaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacct--ctctaaatacaaggagagtacaattacca |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
42270841 |
caaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattacca |
42270742 |
T |
|
| Q |
218 |
ctctctcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactatctaa |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| ||||||||||||||||||||||||||||| |
|
|
| T |
42270741 |
ctctctcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaagctatttttcctctctatattttttctctcactatctaa |
42270642 |
T |
|
| Q |
318 |
acaagctttacttgttcttgtgttgttactgatttgggat |
357 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42270641 |
acaagctttacttgttcttgtgttgttactgatttgggat |
42270602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 302; E-Value: 1e-169
Query Start/End: Original strand, 28 - 358
Target Start/End: Original strand, 24520031 - 24520363
Alignment:
| Q |
28 |
gtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataag |
127 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24520031 |
gtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataag |
24520130 |
T |
|
| Q |
128 |
gggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggac--ctctctaaatacaaggagagtacaattaccactctctct |
225 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
24520131 |
gggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccactctctct |
24520230 |
T |
|
| Q |
226 |
tataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactatctaaacaagctt |
325 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24520231 |
tataaataggagaatactaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttttctctcactatctaaacaagctt |
24520330 |
T |
|
| Q |
326 |
tacttgttcttgtgttgttactgatttgggatg |
358 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
24520331 |
tacttgttcttgtgttgttactgatttgggatg |
24520363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 22 - 311
Target Start/End: Complemental strand, 10427597 - 10427315
Alignment:
| Q |
22 |
tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca |
121 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
10427597 |
tgttaggtaccagagtaacagaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgcggaaacccctcaaca |
10427498 |
T |
|
| Q |
122 |
aataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaaga-aattacaggac--ctctctaaatacaaggagagtacaattaccac |
218 |
Q |
| |
|
|||||||||||||||| |||||| || |||||| |||||||||||||||||||| ||||||| ||| |||||||||||||||||||| ||||||| | |
|
|
| T |
10427497 |
aataaggggaaaaaactacggggaaaaagtagataactttcactaagtggaagacaattacaagacttctctctaaatacaaggagagacaaattacc-c |
10427399 |
T |
|
| Q |
219 |
tctctcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcact |
311 |
Q |
| |
|
|||||||| |||||||||||||| ||| |||||||||||||||||||||||||||| ||| |||||||||||||| |||||||| |
|
|
| T |
10427398 |
tctctctt-gaaataggagaatactaac--------actaggagaaacctcacaggagaaactatatttcctctctatatttttcctctcact |
10427315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 35 - 228
Target Start/End: Complemental strand, 48783031 - 48782850
Alignment:
| Q |
35 |
agtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaa |
134 |
Q |
| |
|
|||| |||||||||||||||| |||||||||| ||||||||| ||||||||||||||||||| |||||||||||| |||||||||||| ||||||| |
|
|
| T |
48783031 |
agtatcaaaatattatcacgcgattaaaataagaaacgagaaaacaggaactgaacacacaata-tttacgtggaaatttctcaacaaataaagggaaaa |
48782933 |
T |
|
| Q |
135 |
aaccacggggcaagagtagagaactttcactaagtggaagaaattacaggac--ctctctaaatacaaggagagtacaattaccactctctcttat |
228 |
Q |
| |
|
| || ||| |||||||||||||||||||||||||||| | ||| ||||||||||||| | ||||||||||||||||||||||||| |
|
|
| T |
48782932 |
a--catggg---------gagaactttcactaagtggaagaaattagatgacctctctctaaatacatg--gagtacaattaccactctctcttat |
48782850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 146 - 272
Target Start/End: Complemental strand, 1979375 - 1979253
Alignment:
| Q |
146 |
aagagtagagaactttcactaagtggaagaaattacaggacctctctaaatacaaggagagtacaattaccactctctcttataaataggagaatacaaa |
245 |
Q |
| |
|
||||||||| |||||||| |||| ||||||||||||| ||||||||||||| ||||||| ||| | |||||||||||||||||||| |||||||| | |
|
|
| T |
1979375 |
aagagtagataactttcagtaagaggaagaaattacacgacctctctaaatgcaaggagggtatatttaccactctctcttataaacaggagaat----a |
1979280 |
T |
|
| Q |
246 |
ctaacacaaactaggagaaacctcaca |
272 |
Q |
| |
|
||| ||| ||| ||||||||||||||| |
|
|
| T |
1979279 |
ctagcactaaccaggagaaacctcaca |
1979253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 75 - 173
Target Start/End: Complemental strand, 17248112 - 17248015
Alignment:
| Q |
75 |
aaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaa |
173 |
Q |
| |
|
||||||| |||| || ||||||||||| || |||||| |||| || |||||||||||||||||||| || ||||||| |||||||||| ||||||||| |
|
|
| T |
17248112 |
aaaagagaaactaaatacacaatattt-acatggaaatcccttaataaataaggggaaaaaaccaccggataagagtatagaactttcattaagtggaa |
17248015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 24 - 101
Target Start/End: Original strand, 36615361 - 36615438
Alignment:
| Q |
24 |
ttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattt |
101 |
Q |
| |
|
|||||||| ||||||| ||||||||||| | ||| |||||||||| | |||||||||| ||| ||||| ||| ||||| |
|
|
| T |
36615361 |
ttaggtactagagtaataaaatattatcgcacagttaaaataagatatgagaaaagagaaaccgaacatacattattt |
36615438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 33 - 101
Target Start/End: Complemental strand, 30165968 - 30165900
Alignment:
| Q |
33 |
agagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattt |
101 |
Q |
| |
|
|||||||||||||| |||||| || ||||||||||| | ||||||| | ||| |||||||| ||||||| |
|
|
| T |
30165968 |
agagtaacaaaataatatcacacaactaaaataagatatgagaaaaaatgaattgaacacataatattt |
30165900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 88 - 126
Target Start/End: Complemental strand, 1979604 - 1979567
Alignment:
| Q |
88 |
aacacacaatattttacgtggaaacccctcaacaaataa |
126 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
1979604 |
aacacacaatattt-acgtggaaacccctcaacaaataa |
1979567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 486; Significance: 0; HSPs: 17)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 486; E-Value: 0
Query Start/End: Original strand, 31 - 557
Target Start/End: Original strand, 5198664 - 5199192
Alignment:
| Q |
31 |
ccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataagggg |
130 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5198664 |
ccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataagggg |
5198763 |
T |
|
| Q |
131 |
aaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctct--aaatacaaggagagtacaattaccactctctcttat |
228 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| |||||||||||||||| |
|
|
| T |
5198764 |
aaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaaataccactctctcttat |
5198863 |
T |
|
| Q |
229 |
aaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactatctaaacaagctttac |
328 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5198864 |
aaataggagaatactaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttttctctcactatctaaacaagctttac |
5198963 |
T |
|
| Q |
329 |
ttgttcttgtgttgttactgatttgggatgagtagaatggtgcaagggacatgctatttatactagtgaaagagtcatgccccaaccaattgcatttatg |
428 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
5198964 |
ttgttcttgtgttgttactgatttgggatgagtagaatggtgcaagggacatgctatttatactagtgaaagagccatgccccaaccaattgcatttatg |
5199063 |
T |
|
| Q |
429 |
gcagcgtgtgaattttcaactttgcatagtaactttccatgtgaacatagaaattacatgccaacatgttttactgccatgtgataacacttcaacaaaa |
528 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5199064 |
gcagcgtgtggattttcaactttgcatagtaactttccatgtgaacatagaaattacatgccaacatgttttactgccatgtgataacacttcaacaaaa |
5199163 |
T |
|
| Q |
529 |
gtggctttaccactttcctgtgttcacaa |
557 |
Q |
| |
|
||||||||||||||||||| ||||||||| |
|
|
| T |
5199164 |
gtggctttaccactttcctatgttcacaa |
5199192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 180; E-Value: 6e-97
Query Start/End: Original strand, 33 - 309
Target Start/End: Complemental strand, 15603183 - 15602905
Alignment:
| Q |
33 |
agagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaa |
132 |
Q |
| |
|
||||||| |||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15603183 |
agagtaagaaaatattatcacgcaattgaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaa |
15603084 |
T |
|
| Q |
133 |
aaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggac--ctctctaaatacaaggagagtacaattaccactctctcttataa |
230 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||| ||| |||||||||| || |||| |||||||||||| ||| |||| ||| |
|
|
| T |
15603083 |
aaaaccacggggcaagagtagagaactttcactaagtagaagaaattacaagacctctctctaaatgcatggagtgtacaattaccattctatcttgtaa |
15602984 |
T |
|
| Q |
231 |
ataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctca |
309 |
Q |
| |
|
|||||||||||| ||||||||| |||| ||||||||||| || | || ||||||||||| ||||||||||| |||||| |
|
|
| T |
15602983 |
ataggagaatactaactaacacttactaagagaaacctcatagaaaaatctaatttttctttctatatttttcctctca |
15602905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 155; E-Value: 5e-82
Query Start/End: Original strand, 20 - 185
Target Start/End: Complemental strand, 825798 - 825632
Alignment:
| Q |
20 |
actgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaa |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
825798 |
actgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaaccactcaa |
825699 |
T |
|
| Q |
120 |
caaataaggggaa-aaaaccacggggcaagagtagagaactttcactaagtggaagaaattacagga |
185 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
825698 |
caaataaggggaaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacagga |
825632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 22 - 185
Target Start/End: Complemental strand, 830452 - 830288
Alignment:
| Q |
22 |
tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
830452 |
tgttaggtaccagagtaacaaaatattatcacgcagttaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca |
830353 |
T |
|
| Q |
122 |
aataaggggaa-aaaaccacggggcaagagtagagaactttcactaagtggaagaaattacagga |
185 |
Q |
| |
|
||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
830352 |
aataaggggaaaaaaaccacggggcaagagtggagaactttcactaagtggaagaaattacagga |
830288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 29 - 287
Target Start/End: Complemental strand, 28716070 - 28715816
Alignment:
| Q |
29 |
taccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataagg |
128 |
Q |
| |
|
||||||||||||||||||||||||| || ||||||||||||||| |||||||||| ||||||||||||| ||||||||||||||||||| |||||||| |
|
|
| T |
28716070 |
taccagagtaacaaaatattatcacacatttaaaataagagacgacaaaagaggaattgaacacacaata-tttacgtggaaacccctcattaaataagg |
28715972 |
T |
|
| Q |
129 |
ggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggac--ctctctaaatacaaggagagtacaattaccactctctctt |
226 |
Q |
| |
|
|| ||||||||| | |||| |||||||||||||| ||||||||||||||||||||| |||||||||| ||||||||||||||||||||| | || | |
|
|
| T |
28715971 |
gg-aaaaaccacaagagaagaatagagaactttcacaaagtggaagaaattacaggacatctctctaaatgcaaggagagtacaattaccaccgtttcct |
28715873 |
T |
|
| Q |
227 |
ataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttt |
287 |
Q |
| |
|
|||||||||||||| |||||||| | ||||||||||||| ||| ||||||||| |||| |
|
|
| T |
28715872 |
ataaataggagaat----actaacactacctaggagaaaccttacaagagaaactattttt |
28715816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 18 - 311
Target Start/End: Original strand, 30396907 - 30397191
Alignment:
| Q |
18 |
atactgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctc |
117 |
Q |
| |
|
||||| || ||| |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| ||| |||||||||| |
|
|
| T |
30396907 |
atactattgggtgccagagtagcaaaatattatcacgcagctaaaataagagacgagaaaagacgaactgaacacac-atatttt-cgttgaaacccctc |
30397004 |
T |
|
| Q |
118 |
aacaaataaggggaaaaaaccacggggcaagagtagagaac-tttcactaagtggaagaaattacaggacctc--tctaaatacaaggagagtacaatta |
214 |
Q |
| |
|
|||||||||||| |||||| ||| |||| |||||||||||| |||||||||||||||||||||||| |||||| |||| |||||||||||| ||||| |
|
|
| T |
30397005 |
aacaaataagggaaaaaaatcacagggcgagagtagagaacttttcactaagtggaagaaattacaagacctctttctatatacaaggagagacaaatta |
30397104 |
T |
|
| Q |
215 |
ccactctctcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcact |
311 |
Q |
| |
|
|| |||| | || ||||||||||||| ||| ||||||||||| |||||||||||||||| ||| ||||||||||| || |||||||| |
|
|
| T |
30397105 |
cc-ctctatgtt-gaaataggagaatattaac--------actaggagaaatctcacaggagaaactatatttcctctctatattgttcctctcact |
30397191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 233 - 313
Target Start/End: Complemental strand, 830291 - 830209
Alignment:
| Q |
233 |
aggagaatacaaac--taacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactat |
313 |
Q |
| |
|
|||||||||||||| |||||| | ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
830291 |
aggagaatacaaacactaacactacctaggagaaacctcacaggagaaactaatttttctctctatatttttcctctcactat |
830209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 22 - 239
Target Start/End: Original strand, 31592910 - 31593121
Alignment:
| Q |
22 |
tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca |
121 |
Q |
| |
|
|||| |||| || ||||||| ||||||||||| ||| || |||||||||||||||||||||||| |||| |||||| |||||||||||| | ||||| | |
|
|
| T |
31592910 |
tgttgggtatcaaagtaacataatattatcacacagatagaataagagacgagaaaagaggaacataacatacaataatttacgtggaaatctctcaata |
31593009 |
T |
|
| Q |
122 |
aataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctaaatacaaggagagtacaattaccactct |
221 |
Q |
| |
|
||||| | |||||||||| | |||||||||||||||||||||| | ||||||||||| || ||| || ||| ||| |||||| |||||||| | |
|
|
| T |
31593010 |
aataa-gaaaaaaaaccac-agataagagtagagaactttcactaaccgaaagaaattacaaga--tctatatatataagaagagtataattacca--gt |
31593103 |
T |
|
| Q |
222 |
ctcttataaataggagaa |
239 |
Q |
| |
|
||||| |||||||||||| |
|
|
| T |
31593104 |
ctcttgtaaataggagaa |
31593121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 233 - 313
Target Start/End: Complemental strand, 825635 - 825553
Alignment:
| Q |
233 |
aggagaatacaaac--taacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactat |
313 |
Q |
| |
|
|||||||||||||| |||||| | |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
825635 |
aggagaatacaaacactaacactacctaggagaaacctcgcaggagaaactaatttttctctctatatttttcctctcactat |
825553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 91 - 240
Target Start/End: Original strand, 13843865 - 13844014
Alignment:
| Q |
91 |
acacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacagga--cct |
188 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||| |||||| | || || |||| |||| ||||| ||||||||||||||||||||| ||| |
|
|
| T |
13843865 |
acacaatattt-acgtggaaacccctcaacaaataaggagaaaaatt-ataggttaaaagtatagaattttcattaagtggaagaaattacaggacccct |
13843962 |
T |
|
| Q |
189 |
ctctaaatacaaggagagtacaattaccactctctcttataaataggagaat |
240 |
Q |
| |
|
| |||||||||| ||| || |||||||||||| | ||| |||||||||||| |
|
|
| T |
13843963 |
ttataaatacaagaagaataaaattaccactctattttaaaaataggagaat |
13844014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 467 - 538
Target Start/End: Original strand, 34614229 - 34614301
Alignment:
| Q |
467 |
atgtgaacatagaaattacatgccaacatgttttactgccatgtgataacacttcaacaaaa-gtggctttac |
538 |
Q |
| |
|
|||| |||||||||||||||||| |||||||||||||||||||||| |||| |||||||||| |||||||||| |
|
|
| T |
34614229 |
atgtaaacatagaaattacatgctaacatgttttactgccatgtgacaacaattcaacaaaaggtggctttac |
34614301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 117 - 242
Target Start/End: Complemental strand, 8004292 - 8004167
Alignment:
| Q |
117 |
caacaaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctct--aaatacaaggagagtacaatta |
214 |
Q |
| |
|
||||||||||| ||||||| | |||||| | || |||| |||||||||| | |||||||||||| | |||||||| |||| ||| |||||||||||| |
|
|
| T |
8004292 |
caacaaataagaggaaaaa-caacggggtatgactagaaaactttcactgaatggaagaaattataaaacctctctttaaatgtaagaagagtacaatta |
8004194 |
T |
|
| Q |
215 |
ccactctctcttataaataggagaatac |
242 |
Q |
| |
|
| |||||||||||||||||||||||||| |
|
|
| T |
8004193 |
c-actctctcttataaataggagaatac |
8004167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 22 - 242
Target Start/End: Original strand, 13840240 - 13840456
Alignment:
| Q |
22 |
tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca |
121 |
Q |
| |
|
|||| ||||||||| |||||||||||||||||| | || ||||| ||| |||||| ||||||| || |||||||| ||||| || || |||||||| |
|
|
| T |
13840240 |
tgttgggtaccagaataacaaaatattatcacgtaattataataaaagatgagaaaggaggaaccga--acacaata-tttacatgagaattcctcaaca |
13840336 |
T |
|
| Q |
122 |
aataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggac--ctctctaaatacaaggagagtacaattaccact |
219 |
Q |
| |
|
|| |||||| |||| || || ||||||||||| || ||| || |||| || |||||||| || ||||||||||| ||||||||||||||||| | | |
|
|
| T |
13840337 |
aacaagggggaaaa--catggagcaagagtagaaaatttttaccaagt-aaaaaaattacaaaacctctctctaaatataaggagagtacaattacaatt |
13840433 |
T |
|
| Q |
220 |
ctctcttataaataggagaatac |
242 |
Q |
| |
|
|||||||| ||||| ||||||| |
|
|
| T |
13840434 |
ctctcttaaaaataaaagaatac |
13840456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 42 - 157
Target Start/End: Original strand, 12175768 - 12175881
Alignment:
| Q |
42 |
aaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacg |
141 |
Q |
| |
|
||||||||||||||| ||||||||| ||| || |||| || || ||||||||||||||||| |||||||| ||||| |||||| ||||||||| | |
|
|
| T |
12175768 |
aaatattatcacgcaactaaaataaaagatgataaaaaagaaattgaacacacaatatttt-tgtggaaacatctcaataaataa-tggaaaaaacaatt |
12175865 |
T |
|
| Q |
142 |
gggcaagagtagagaa |
157 |
Q |
| |
|
|| ||||||||||||| |
|
|
| T |
12175866 |
ggacaagagtagagaa |
12175881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 361 - 431
Target Start/End: Complemental strand, 28715747 - 28715678
Alignment:
| Q |
361 |
tagaatggtgcaagggacatgctatttatactagtgaaagagtcatgccccaaccaattgcatttatggca |
431 |
Q |
| |
|
|||||||||||||| | ||||||||||||| ||||||||| ||||||||||||| || ||||||||||| |
|
|
| T |
28715747 |
tagaatggtgcaagag-catgctatttataggagtgaaagaaccatgccccaaccatttacatttatggca |
28715678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 83 - 197
Target Start/End: Complemental strand, 42117876 - 42117764
Alignment:
| Q |
83 |
aactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattaca |
182 |
Q |
| |
|
||||||||| ||||||||| |||| |||||| ||||| |||||||||||||| ||||| | ||| |||||| |||||||| ||| | |||||||| | |
|
|
| T |
42117876 |
aactgaacatacaatattt-acgtagaaacctctcaattaataaggggaaaaa-ccacgagacaaaagtagataactttcattaaacgagagaaattata |
42117779 |
T |
|
| Q |
183 |
ggacctctctaaata |
197 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
42117778 |
agacctctctaaata |
42117764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 37 - 86
Target Start/End: Original strand, 9358158 - 9358207
Alignment:
| Q |
37 |
taacaaaatattatcacgcagctaaaataagagacgagaaaagaggaact |
86 |
Q |
| |
|
|||| ||||||||| |||||||||||| || ||||||||||||| ||||| |
|
|
| T |
9358158 |
taaccaaatattattacgcagctaaaacaacagacgagaaaagaagaact |
9358207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 427; Significance: 0; HSPs: 13)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 20 - 556
Target Start/End: Original strand, 27878707 - 27879263
Alignment:
| Q |
20 |
actgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaa |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27878707 |
actgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaa |
27878806 |
T |
|
| Q |
120 |
caaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggac--ctctctaaatacaaggagagtacaattacca |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
27878807 |
caaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattacca |
27878906 |
T |
|
| Q |
218 |
ctctctcttataaataggagaatacaa--actaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcacta-tc |
314 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| || |
|
|
| T |
27878907 |
ctctctcttataaataggagaatacaaacactaacactacctaggagaaacctcacaggagaaactaatttttctctctatatttttcctctctctattc |
27879006 |
T |
|
| Q |
315 |
ta-----aacaa---------gctttac-ttgttcttgtgttgttactgatttgggatgagtagaatggtgcaagggacatgctatttatactagtgaaa |
399 |
Q |
| |
|
|| ||||| | |||| ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27879007 |
tactaagaacaagtagttgttgtgttactttgttctggtgttgttactaatttgggatgagtagaatggtgcaagggacatgctatttatactagtgaaa |
27879106 |
T |
|
| Q |
400 |
gagtcatgccccaaccaattgcatttatggcagcgtgtgaattttcaactttgcatagtaactttccatgtgaacatagaaattacatgccaacatgttt |
499 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27879107 |
gagccatgccccaaccaattgcatttatggcagcgtgtgaattttcaactttgcatagtaactttccatgtgaacatagaaattacatgccaacatgttt |
27879206 |
T |
|
| Q |
500 |
tactgccatgtgataacacttcaacaaaagtggctttaccactttcctgtgttcaca |
556 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
27879207 |
tactgccatgtgataacacttcaacaaaagtggctttaccactttcctgtgtccaca |
27879263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 22 - 359
Target Start/End: Original strand, 26976131 - 26976470
Alignment:
| Q |
22 |
tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26976131 |
tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca |
26976230 |
T |
|
| Q |
122 |
aataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggac--ctctctaaatacaaggagagtacaattaccact |
219 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| |
|
|
| T |
26976231 |
aataaggggaaaaaaccaaggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccact |
26976330 |
T |
|
| Q |
220 |
ctctcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactatctaaac |
319 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| |
|
|
| T |
26976331 |
ctctcttataaataggagaatactaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttttctctcactatctaaac |
26976430 |
T |
|
| Q |
320 |
aagctttacttgttcttgtgttgttactgatttgggatga |
359 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26976431 |
aagctttacttgttcttgtgttgttactgatttgggatga |
26976470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 22 - 358
Target Start/End: Complemental strand, 1235018 - 1234680
Alignment:
| Q |
22 |
tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1235018 |
tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca |
1234919 |
T |
|
| Q |
122 |
aataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacct--ctctaaatacaaggagagtacaattaccact |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| ||||||| |
|
|
| T |
1234918 |
aataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaaataccact |
1234819 |
T |
|
| Q |
220 |
ctctcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactatctaaac |
319 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| |
|
|
| T |
1234818 |
ctctcttataaataggagaatactaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttttctctcactatctaaac |
1234719 |
T |
|
| Q |
320 |
aagctttacttgttcttgtgttgttactgatttgggatg |
358 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1234718 |
aagctttacttgttcttgtgttgttactgatttgggatg |
1234680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 22 - 357
Target Start/End: Original strand, 27873990 - 27874327
Alignment:
| Q |
22 |
tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca |
121 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27873990 |
tgttaggtaccagagtaacaaaatattatcacgcatctaaaataagagaagagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca |
27874089 |
T |
|
| Q |
122 |
aataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggac--ctctctaaatacaaggagagtacaattaccact |
219 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
27874090 |
aataaagggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccact |
27874189 |
T |
|
| Q |
220 |
ctctcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactatctaaac |
319 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| ||||||||||||||||||||||||||||||| |
|
|
| T |
27874190 |
ctctcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaagctatttttcctctctatattttttctctcactatctaaac |
27874289 |
T |
|
| Q |
320 |
aagctttacttgttcttgtgttgttactgatttgggat |
357 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27874290 |
aagctttacttgttcttgtgttgttactgatttgggat |
27874327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 22 - 311
Target Start/End: Complemental strand, 18968194 - 18967912
Alignment:
| Q |
22 |
tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| |
|
|
| T |
18968194 |
tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaatacataatattttacgtggaaacccctcaaca |
18968095 |
T |
|
| Q |
122 |
aataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaaga-aattacaggac--ctctctaaatacaaggagagtacaattaccac |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| ||| |||||||||||||||||||| ||||| | | |
|
|
| T |
18968094 |
aataaggggaaaaaaccacggggcaagagtagaaaactttcactaagtggaagacaattacaagacttctctctaaatacaaggagagacaaattagc-c |
18967996 |
T |
|
| Q |
219 |
tctctcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcact |
311 |
Q |
| |
|
|||||| | |||||||||||||| ||| |||||||||||||||||| ||||||||| ||| |||| ||||||||| |||||||| |
|
|
| T |
18967995 |
tctctcat-gaaataggagaatactaac--------actaggagaaacctcacaagagaaactatatttcctctttatatttttcctctcact |
18967912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 21 - 295
Target Start/End: Complemental strand, 30986830 - 30986552
Alignment:
| Q |
21 |
ctgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaa---acccctc |
117 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| ||||||| |
|
|
| T |
30986830 |
ctgttaggtatcagagtaacaaaatattatcacgtagctaaaataagagacgagaaaagaggaactgaacgcacaata-tttacgtggaaagtacccctc |
30986732 |
T |
|
| Q |
118 |
aacaaataagg--ggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggac--ctctctaaatacaaggagagtacaatt |
213 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| |||||||||||||||| |
|
|
| T |
30986731 |
aacaaataaggaaaaaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattgcaggacctctctctaaatgcaaggagagtacaatt |
30986632 |
T |
|
| Q |
214 |
accactctctcttataaataggagaatacaaactaacacaaactaggagaaacctca-caggagaaactaatt-tttctctcta |
295 |
Q |
| |
|
||||||||||||| ||||||| ||||| ||| |||| | ||||||||||||||| ||||||||||| || |||||||||| |
|
|
| T |
30986631 |
accactctctcttgtaaatagaagaat----actgacactacctaggagaaacctcatgaggagaaactatttctttctctcta |
30986552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 68 - 308
Target Start/End: Complemental strand, 30966923 - 30966683
Alignment:
| Q |
68 |
agacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaa-aaaaccacggggcaagagtagagaactttcacta |
166 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| || |||| ||||||||||||||||||||||||||||| |
|
|
| T |
30966923 |
agacgagaaaagaggaactgaacacacaatattt-acgtggaaacccatcaacaaataagggaaataaaatcacggggcaagagtagagaactttcacta |
30966825 |
T |
|
| Q |
167 |
agtggaagaaattacaggac--ctctctaaatacaaggagagtacaattaccactctctcttataaataggagaatacaaactaacacaaactaggagaa |
264 |
Q |
| |
|
||||||||||||| ||| || |||||||||| ||||||||||||||||||||||||||||| ||||||| ||||| ||| | | | ||||||||| |
|
|
| T |
30966824 |
agtggaagaaattgcagaacctctctctaaatgcaaggagagtacaattaccactctctcttgtaaatagaagaat----actgaggctacctaggagaa |
30966729 |
T |
|
| Q |
265 |
acctcac-aggagaaactaatt-tttctctctatattttttctctc |
308 |
Q |
| |
|
||||||| || |||||||| || ||||||||||||||||||||||| |
|
|
| T |
30966728 |
acctcacaagtagaaactatttctttctctctatattttttctctc |
30966683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 27 - 192
Target Start/End: Complemental strand, 21966860 - 21966698
Alignment:
| Q |
27 |
ggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataa |
126 |
Q |
| |
|
||||||| |||||| ||| ||||||||||||||||| ||| | | ||||||||||||||| |||| | ||||||| | ||||||||||||||| |||||| |
|
|
| T |
21966860 |
ggtaccaaagtaacgaaacattatcacgcagctaaa-taacatatgagaaaagaggaactaaacataaaatattt-atgtggaaacccctcaataaataa |
21966763 |
T |
|
| Q |
127 |
ggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctct |
192 |
Q |
| |
|
|||||||| | | ||||||||||||||||||||||||||| |||||||||||| | ||||||||| |
|
|
| T |
21966762 |
agggaaaaatc-atggggcaagagtagagaactttcactaaatggaagaaattataagacctctct |
21966698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 41 - 206
Target Start/End: Original strand, 23012520 - 23012683
Alignment:
| Q |
41 |
aaaatattatcacgcagctaaaataagagacgagaaaa-gaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaacca |
139 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||| || ||| |||||||||| ||||| |||||||||| | ||| || |||||||||||| ||| |
|
|
| T |
23012520 |
aaaatattatcacgcaactaaaataagagacgagaaaaagaagaattgaacacacattattt-acgtggaaactcgtcacaaattaaggggaaaaa-cca |
23012617 |
T |
|
| Q |
140 |
cggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctaaatacaaggagag |
206 |
Q |
| |
|
||| |||||||||||||||||||||||||| ||||||| || ||||||| ||||||||| ||||| |
|
|
| T |
23012618 |
tggg-caagagtagagaactttcactaagtgagagaaatttcaagacctctttaaatacaatgagag |
23012683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 20 - 73
Target Start/End: Complemental strand, 30967727 - 30967674
Alignment:
| Q |
20 |
actgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacga |
73 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
30967727 |
actgttaggtaccagagtaacaaaatattatcaagcagctaaaataagagacga |
30967674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 378 - 426
Target Start/End: Complemental strand, 30986478 - 30986430
Alignment:
| Q |
378 |
catgctatttatactagtgaaagagtcatgccccaaccaattgcattta |
426 |
Q |
| |
|
||||||||||||| ||||||||||| |||||||||||||||| |||||| |
|
|
| T |
30986478 |
catgctatttatattagtgaaagagccatgccccaaccaattacattta |
30986430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 378 - 417
Target Start/End: Complemental strand, 30966605 - 30966566
Alignment:
| Q |
378 |
catgctatttatactagtgaaagagtcatgccccaaccaa |
417 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
30966605 |
catgctatttatactagtgaaagagccatgccccaaccaa |
30966566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 156 - 206
Target Start/End: Original strand, 6174185 - 6174235
Alignment:
| Q |
156 |
aactttcactaagtggaagaaattacaggacctctctaaatacaaggagag |
206 |
Q |
| |
|
|||||||| ||||||| |||||||||| |||||||||||||||||| |||| |
|
|
| T |
6174185 |
aactttcattaagtgggagaaattacaagacctctctaaatacaagtagag |
6174235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 386; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 22 - 556
Target Start/End: Original strand, 29585300 - 29585826
Alignment:
| Q |
22 |
tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca |
121 |
Q |
| |
|
||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29585300 |
tgttaggtatcagagtaacaaaatattatcatgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca |
29585399 |
T |
|
| Q |
122 |
aataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggac--ctctctaaatacaaggagagtacaattaccact |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||| |
|
|
| T |
29585400 |
aataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaagagagtacaattaccact |
29585499 |
T |
|
| Q |
220 |
ctctcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcacta-tctaaa |
318 |
Q |
| |
|
||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| | |
|
|
| T |
29585500 |
ctctcttataaataggagaatactaactaatacaaactaggagaaacctcacaggagaaactaatttttctctctatatttttcctctcactactctaga |
29585599 |
T |
|
| Q |
319 |
caagctttacttgttcttgtgttgttactgatttgggatgagtagaatggtgcaa-gggacatgctatttatactagtgaaagagtcatgccccaaccaa |
417 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||| | ||| ||| || ||| | ||||||||||| |||||||||||||| |
|
|
| T |
29585600 |
caagctttacttgttgttgtgttgttactgatttgggatga--tgtgtggaacaatggtaca----------aatagtgaaagagccatgccccaaccaa |
29585687 |
T |
|
| Q |
418 |
ttgcatttatggcagcgtgtgaattttcaactttgcatagtaactttccatgtgaacatagaaattacatgccaacatgttttactgccatgtgataaca |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
29585688 |
ttgcatttatggcagcgtgtgaattttcaactttgcatagtaactttccatgtgaacataaaaactacatgccaacatgttttactgccatgtgataaca |
29585787 |
T |
|
| Q |
518 |
cttcaacaaaagtggctttaccactttcctgtgttcaca |
556 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29585788 |
attcaacaaaagtggctttaccactttcctgtgttcaca |
29585826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 20 - 390
Target Start/End: Complemental strand, 41718729 - 41718357
Alignment:
| Q |
20 |
actgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaa |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41718729 |
actgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaa |
41718630 |
T |
|
| Q |
120 |
caaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctct--aaatacaaggagagtacaattacca |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| ||||| |
|
|
| T |
41718629 |
caaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaaatacca |
41718530 |
T |
|
| Q |
218 |
ctctctcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactatctaa |
317 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| |
|
|
| T |
41718529 |
ctctctcttataaataggagaatactaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttttctctcactatctaa |
41718430 |
T |
|
| Q |
318 |
acaagctttacttgttcttgtgttgttactgatttgggatgagtagaatggtgcaagggacatgctatttata |
390 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41718429 |
acaagctttacttgttcttgtgttgttactgatttgggatgagtagaatggtgcaagggacatgctatttata |
41718357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 22 - 390
Target Start/End: Complemental strand, 41723453 - 41723083
Alignment:
| Q |
22 |
tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41723453 |
tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca |
41723354 |
T |
|
| Q |
122 |
aataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctct--aaatacaaggagagtacaattaccact |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| ||||||| |
|
|
| T |
41723353 |
aataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaaataccact |
41723254 |
T |
|
| Q |
220 |
ctctcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactatctaaac |
319 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| |
|
|
| T |
41723253 |
ctctcttataaataggagaatactaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttttctctcactatctaaac |
41723154 |
T |
|
| Q |
320 |
aagctttacttgttcttgtgttgttactgatttgggatgagtagaatggtgcaagggacatgctatttata |
390 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41723153 |
aagctttacttgttcttgtgttgttactgatttgggatgagtagaatggtgcaagggacatgctatttata |
41723083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 22 - 359
Target Start/End: Complemental strand, 34360273 - 34359934
Alignment:
| Q |
22 |
tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca |
121 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
34360273 |
tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtagaaacccctcaaca |
34360174 |
T |
|
| Q |
122 |
aataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacct--ctctaaatacaaggagagtacaattaccact |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| |
|
|
| T |
34360173 |
aataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccact |
34360074 |
T |
|
| Q |
220 |
ctctcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactatctaaac |
319 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34360073 |
ctctcttataaataggagaatactaactaacacaaactaggagaaatctcacaggagaaactaatttttctctctatattttttctctcactatctaaac |
34359974 |
T |
|
| Q |
320 |
aagctttacttgttcttgtgttgttactgatttgggatga |
359 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34359973 |
aagctttacttgttcttgtgttgttactgatttgggatga |
34359934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 41 - 359
Target Start/End: Complemental strand, 34352546 - 34352226
Alignment:
| Q |
41 |
aaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccac |
140 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34352546 |
aaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccac |
34352447 |
T |
|
| Q |
141 |
ggggcaagagtagagaactttcactaagtggaagaaattacaggacctctct--aaatacaaggagagtacaattaccactctctcttataaataggaga |
238 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34352446 |
ggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccactctctcttataaataggaga |
34352347 |
T |
|
| Q |
239 |
atacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactatctaaacaagctttacttgttcttgt |
338 |
Q |
| |
|
|||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34352346 |
atactaactaacacaaactaggagaaatctcacaggagaaactaatttttctctctatattttttctctcactatctaaacaagctttacttgttcttgt |
34352247 |
T |
|
| Q |
339 |
gttgttactgatttgggatga |
359 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
34352246 |
gttgttactgatttgggatga |
34352226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 370; Significance: 0; HSPs: 12)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 20 - 556
Target Start/End: Original strand, 2817261 - 2817788
Alignment:
| Q |
20 |
actgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaa |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2817261 |
actgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagaagagaaaagaggaactgaacacacaatattttacgtggaaacccctcaa |
2817360 |
T |
|
| Q |
120 |
caaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctct--aaatacaaggagagtacaattacca |
217 |
Q |
| |
|
|||||||||| |||||||||| ||||||||||| |||||| |||||||||||||||||||||| || |||||| |||||||||||||||||||| |||| |
|
|
| T |
2817361 |
caaataaggg-aaaaaaccacagggcaagagtaaagaactctcactaagtggaagaaattacaagaactctctctaaatacaaggagagtacaatcacca |
2817459 |
T |
|
| Q |
218 |
ctctctct--tataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactatc- |
314 |
Q |
| |
|
|||||||| ||||||||||||||||| |||||| |||||||||||||||| || |||| ||||||||||||||||||||| || | |
|
|
| T |
2817460 |
ctctctctcttataaataggagaatactaactaatacaaactaggagaaac--------------tatttttcctctctatattttttctctcattaccc |
2817545 |
T |
|
| Q |
315 |
taaacaagctttacttgttcttgtgttgttactgatttgggatgagtagaatggtgcaagggacatgctatttatactagtgaaagagtcatgccccaac |
414 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| |
|
|
| T |
2817546 |
taaacaagttttacttgttcttgtgttgttactgatttgggatgagtagaatggtgcaagggacatgctatgtatactagtgaaagagccatgccccaac |
2817645 |
T |
|
| Q |
415 |
caattgcatttatggcagcgtgtgaattttcaactttgcatagtaactttccatgtgaacatagaaattacatgccaacatgttttactgccatgtgata |
514 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
2817646 |
caattgcatttatggcagcgtgtgaattttcaactttgcatagtaacttcccatgtgaacatagaaattacatgccaacatattttactgccatgtgata |
2817745 |
T |
|
| Q |
515 |
acacttcaacaaaagtggcttta-ccactttcctgtgttcaca |
556 |
Q |
| |
|
||| ||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
2817746 |
acaattcaacaaaagtggctttatgcactttcctgtgttcaca |
2817788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 20 - 358
Target Start/End: Original strand, 5823273 - 5823613
Alignment:
| Q |
20 |
actgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaa |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5823273 |
actgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaa |
5823372 |
T |
|
| Q |
120 |
caaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggac--ctctctaaatacaaggagagtacaattacca |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| |
|
|
| T |
5823373 |
caaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattacca |
5823472 |
T |
|
| Q |
218 |
ctctctcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactatctaa |
317 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| |
|
|
| T |
5823473 |
ctctctcttataaataggagaatactaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttttctctcactatctaa |
5823572 |
T |
|
| Q |
318 |
acaagctttacttgttcttgtgttgttactgatttgggatg |
358 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5823573 |
acaagctttacttgttcttgtgttgttactgatttgggatg |
5823613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 22 - 359
Target Start/End: Original strand, 5818513 - 5818852
Alignment:
| Q |
22 |
tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca |
121 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5818513 |
tgttaggtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaact |
5818612 |
T |
|
| Q |
122 |
aataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggac--ctctctaaatacaaggagagtacaattaccact |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| |
|
|
| T |
5818613 |
aataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccact |
5818712 |
T |
|
| Q |
220 |
ctctcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactatctaaac |
319 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| |
|
|
| T |
5818713 |
ctctcttataaataggagaatactaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttttctctcactatctaaac |
5818812 |
T |
|
| Q |
320 |
aagctttacttgttcttgtgttgttactgatttgggatga |
359 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5818813 |
aagctttacttgttcttgtgttgttactgatttgggatga |
5818852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 22 - 313
Target Start/End: Complemental strand, 54546200 - 54545906
Alignment:
| Q |
22 |
tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca |
121 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| ||||||||||||||||||| |
|
|
| T |
54546200 |
tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagatgagaaaagaggaactgaacatacaatattt-acgtggaaacccctcaaca |
54546102 |
T |
|
| Q |
122 |
aataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacct--ctctaaatacaaggagagtacaattaccact |
219 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| |||||| |||||||||||||||||||||||| |
|
|
| T |
54546101 |
aataaggggaaaaaaccacggggctagagtagagaactttcactaagtggatgaaattacaggacctctctctaactacaaggagagtacaattaccact |
54546002 |
T |
|
| Q |
220 |
ctctcttataaataggagaatacaa--actaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactat |
313 |
Q |
| |
|
||||||||||||||||||||||||| |||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
54546001 |
ctctcttataaataggagaatacaaacactaacactacctaggagaaacctcacaggagaaactaatttttctctctatatttttcctctcactat |
54545906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 22 - 175
Target Start/End: Original strand, 24659136 - 24659287
Alignment:
| Q |
22 |
tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca |
121 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
24659136 |
tgttaggtaccagagtaataaaatattatcacacagctaaaataagagatgagaaaagaggaactgaacacacaacattttacgtggaaacccctcaaca |
24659235 |
T |
|
| Q |
122 |
aataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaaga |
175 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
24659236 |
aataaggggaaaaaaccacggggcaagagt--agaactttcactaagtggaaga |
24659287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 30 - 136
Target Start/End: Complemental strand, 4579360 - 4579254
Alignment:
| Q |
30 |
accagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggg |
129 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4579360 |
accagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggg |
4579261 |
T |
|
| Q |
130 |
gaaaaaa |
136 |
Q |
| |
|
||||||| |
|
|
| T |
4579260 |
gaaaaaa |
4579254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 36 - 206
Target Start/End: Original strand, 31204781 - 31204950
Alignment:
| Q |
36 |
gtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaa |
135 |
Q |
| |
|
|||||||||||||| ||||||| ||||| |||||| || |||||||||||||||| |||||||||| ||||||||||||||||||||||||| ||||||| |
|
|
| T |
31204781 |
gtaacaaaatattagcacgcagttaaaagaagagatga-aaaagaggaactgaactcacaatattt-acgtggaaacccctcaacaaataagaggaaaaa |
31204878 |
T |
|
| Q |
136 |
accacgg-ggcaagagtagagaactttcactaagtggaagaaattacaggacctctctaaatacaaggagag |
206 |
Q |
| |
|
| ||||| ||||| ||||||||||||||||||||||| | |||||||| ||||||||||||| |||||||| |
|
|
| T |
31204879 |
atcacggaggcaatagtagagaactttcactaagtgggaaaaattacaaaacctctctaaatataaggagag |
31204950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 187 - 311
Target Start/End: Original strand, 24671187 - 24671301
Alignment:
| Q |
187 |
ctctctaaatacaaggagagtacaattaccactctctcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaattt |
286 |
Q |
| |
|
|||||||||||||||||||| ||||||| ||||||||| |||||||||||||| ||| |||||||||||||||||||||||||||| || |
|
|
| T |
24671187 |
ctctctaaatacaaggagagacaaattacc-ctctctcttg-aaataggagaatactaac--------actaggagaaacctcacaggagaaactatatt |
24671276 |
T |
|
| Q |
287 |
ttctctctatattttttctctcact |
311 |
Q |
| |
|
| |||||||||||||| |||||||| |
|
|
| T |
24671277 |
tcctctctatatttttcctctcact |
24671301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 60 - 215
Target Start/End: Complemental strand, 35977258 - 35977103
Alignment:
| Q |
60 |
aaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagtaga-gaac |
158 |
Q |
| |
|
|||||||||| |||||||||| || |||||| ||||||||| |||| ||| || |||||| ||| |||||||| ||| |||||||||| | || |
|
|
| T |
35977258 |
aaaataagaggtgagaaaagagaaattgaacaaacaatattt-acgtaaaaaaccatcaacatata--gggaaaaactcacttggcaagagtaaaagagt |
35977162 |
T |
|
| Q |
159 |
tttcactaagtggaagaaattacaggac--ctctctaaatacaaggagagtacaattac |
215 |
Q |
| |
|
||||||||||||||| |||||||| ||| |||||||||||||||||||| |||||||| |
|
|
| T |
35977161 |
tttcactaagtggaaaaaattacaagacttctctctaaatacaaggagagaacaattac |
35977103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 260 - 311
Target Start/End: Complemental strand, 4579177 - 4579126
Alignment:
| Q |
260 |
gagaaacctcacaggagaaactaatttttctctctatattttttctctcact |
311 |
Q |
| |
|
||||||||||||||||||||||| ||| |||||||||||||| |||||||| |
|
|
| T |
4579177 |
gagaaacctcacaggagaaactatatttcctctctatatttttcctctcact |
4579126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 36 - 206
Target Start/End: Complemental strand, 36420220 - 36420054
Alignment:
| Q |
36 |
gtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaa |
135 |
Q |
| |
|
||||||||||||||||| | || ||||||| |||| ||||||| | |||| ||||| |||| |||||||||||| | ||||||||| | | |||| |
|
|
| T |
36420220 |
gtaacaaaatattatcatgtagttaaaatatgagatgagaaaaaaagaacaacacacataata-tttacgtggaaatctttcaacaaat-acagaaaaag |
36420123 |
T |
|
| Q |
136 |
accacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctaaatacaaggagag |
206 |
Q |
| |
|
|| ||||||||| |||||| ||| || |||||| | |||||||||| || ||||||||||||| ||||| |
|
|
| T |
36420122 |
actacggggcaaaagtagaaaacatttgctaagttggagaaattacaaga--tctctaaatacaatgagag |
36420054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 20 - 66
Target Start/End: Complemental strand, 25877132 - 25877086
Alignment:
| Q |
20 |
actgttaggtaccagagtaacaaaatattatcacgcagctaaaataa |
66 |
Q |
| |
|
|||||||||||||||| ||||| |||||||| ||||| ||||||||| |
|
|
| T |
25877132 |
actgttaggtaccagaataacataatattattacgcaactaaaataa |
25877086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 310; Significance: 1e-174; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 20 - 358
Target Start/End: Original strand, 9444090 - 9444430
Alignment:
| Q |
20 |
actgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaa |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9444090 |
actgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaa |
9444189 |
T |
|
| Q |
120 |
caaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggac--ctctctaaatacaaggagagtacaattacca |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| ||||| |
|
|
| T |
9444190 |
caaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaaatacca |
9444289 |
T |
|
| Q |
218 |
ctctctcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactatctaa |
317 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| |
|
|
| T |
9444290 |
ctctctcttataaataggagaatactaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttttctctcactatctaa |
9444389 |
T |
|
| Q |
318 |
acaagctttacttgttcttgtgttgttactgatttgggatg |
358 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9444390 |
acaagctttacttgttcttgtgttgttactgatttgggatg |
9444430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 22 - 358
Target Start/End: Original strand, 9439372 - 9439710
Alignment:
| Q |
22 |
tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9439372 |
tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca |
9439471 |
T |
|
| Q |
122 |
aataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggac--ctctctaaatacaaggagagtacaattaccact |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| ||||||| |
|
|
| T |
9439472 |
aataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaaataccact |
9439571 |
T |
|
| Q |
220 |
ctctcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactatctaaac |
319 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| |
|
|
| T |
9439572 |
ctctcttataaataggagaatactaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttttctctcactatctaaac |
9439671 |
T |
|
| Q |
320 |
aagctttacttgttcttgtgttgttactgatttgggatg |
358 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9439672 |
aagctttacttgttcttgtgttgttactgatttgggatg |
9439710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 39 - 95
Target Start/End: Complemental strand, 4799371 - 4799315
Alignment:
| Q |
39 |
acaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacaca |
95 |
Q |
| |
|
||||||||||||||| | |||||||||||||| |||||||||| || |||||||||| |
|
|
| T |
4799371 |
acaaaatattatcacactgctaaaataagagatgagaaaagagaaattgaacacaca |
4799315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 94
Target Start/End: Complemental strand, 4844943 - 4844870
Alignment:
| Q |
21 |
ctgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacac |
94 |
Q |
| |
|
||||||||||| |||| ||||||| |||||||||| | |||||||||| |||| |||| ||| ||||||||| |
|
|
| T |
4844943 |
ctgttaggtacaagagaaacaaaacattatcacgctgtaaaaataagagttgagataagaagaattgaacacac |
4844870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 184; Significance: 3e-99; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 184; E-Value: 3e-99
Query Start/End: Original strand, 27 - 311
Target Start/End: Original strand, 16183636 - 16183913
Alignment:
| Q |
27 |
ggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataa |
126 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16183636 |
ggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataa |
16183735 |
T |
|
| Q |
127 |
ggggaaaaaaccacggggcaagagtagagaactttcactaagtggaaga-aattacaggac--ctctctaaatacaaggagagtacaattaccactctct |
223 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |||||||||||||||||||| ||||||| |||||| |
|
|
| T |
16183736 |
ggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagacaattacaagacctctctctaaatacaaggagagacaaattacc-ctctct |
16183834 |
T |
|
| Q |
224 |
cttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcact |
311 |
Q |
| |
|
||| |||||||||||||| ||| |||||||||||||||||||||||||||| ||| |||||||||||||| |||||||| |
|
|
| T |
16183835 |
ctt-gaaataggagaatactaac--------actaggagaaacctcacaggagaaactatatttcctctctatatttttcctctcact |
16183913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 22 - 312
Target Start/End: Complemental strand, 30235339 - 30235043
Alignment:
| Q |
22 |
tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca |
121 |
Q |
| |
|
|||| |||||||||||| ||||||||||| || |||||||||||| | | |||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
30235339 |
tgttgggtaccagagtagcaaaatattattacacagctaaaataaaaaatgagaaaagaggaactgaacacacaatattt-acgtggaaacccctcaacg |
30235241 |
T |
|
| Q |
122 |
aataaggggaaaaaa-ccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctct---aaatacaaggagagtacaattacca |
217 |
Q |
| |
|
||||||||||||||| ||||||| ||||||||| |||||||| ||| | |||||||||||||||||||||| | || ||||||||||||||||||| |
|
|
| T |
30235240 |
aataaggggaaaaaaaccacgggataagagtagaaaactttcaataactagaagaaattacaggacctctctcctatttataaggagagtacaattacca |
30235141 |
T |
|
| Q |
218 |
ctctctcttataaataggagaatacaa--actaacacaaactaggagaaacctca-caggagaaactaatttttctctctatattttttctctcacta |
312 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||| | || ||||||||||| ||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
30235140 |
ctctctcttataaataggagaatacaaacactaacactacgtaagagaaacctcataaggagaaactaatttttctctctatatttttcctctcacta |
30235043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 20 - 242
Target Start/End: Original strand, 8139962 - 8140183
Alignment:
| Q |
20 |
actgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaa |
119 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||| |||||||||||||||| |||||||||| |||||||| ||||||| |||| ||||||||||||||| |
|
|
| T |
8139962 |
actgttgggtaccagagtaacaaaatattatcacacagctaaaataagagatgagaaaagagaaactgaacgcacaata-tttatgtggaaacccctcaa |
8140060 |
T |
|
| Q |
120 |
caaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggac--ctctctaaatacaaggagagtacaattacca |
217 |
Q |
| |
|
|||||||||||| ||||||| |||| |||| |||| |||||||||| |||||||||||||| | ||| |||||| ||||||||||||| ||||||| |
|
|
| T |
8140061 |
caaataaggggagaaaaccatggggtaagattagaaaactttcactcagtggaagaaattataagacctctctcttaatacaaggagagacaaattacc- |
8140159 |
T |
|
| Q |
218 |
ctctctcttataaataggagaatac |
242 |
Q |
| |
|
||||||||| |||||||||||||| |
|
|
| T |
8140160 |
ctctctctt-gaaataggagaatac |
8140183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 20 - 206
Target Start/End: Original strand, 8138458 - 8138645
Alignment:
| Q |
20 |
actgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaa |
119 |
Q |
| |
|
|||||| |||| ||||||| |||| |||||||||||||||||||||||||||||||||||| |||| |||||||| || || | |||||||||||| || |
|
|
| T |
8138458 |
actgttgggtagcagagtatcaaagtattatcacgcagctaaaataagagacgagaaaagaaaaacttaacacacagtaatt-atgtggaaaccccttaa |
8138556 |
T |
|
| Q |
120 |
caaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacct--ctctaaatacaaggagag |
206 |
Q |
| |
|
|||| ||||||| ||||||||| ||||||| ||||||||||||||||| |||||||||||||| ||||| |||||||||||||||||| |
|
|
| T |
8138557 |
caaacaaggggagaaaaccacgaggcaagattagagaactttcactaaatggaagaaattacaagacctccctctaaatacaaggagag |
8138645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 35 - 180
Target Start/End: Original strand, 5102606 - 5102749
Alignment:
| Q |
35 |
agtaacaaaatattatcacgcagctaaaataagagacgagaaaa-gaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaa |
133 |
Q |
| |
|
||||||||||||||||||| || ||||||||| ||| ||||||| |||| ||| || ||| ||||||| || || |||||| |||||||||||||||||| |
|
|
| T |
5102606 |
agtaacaaaatattatcactcaactaaaataaaagatgagaaaaagagggactaaatacataatattt-acatgaaaaccc-tcaacaaataaggggaaa |
5102703 |
T |
|
| Q |
134 |
aaaccacggggcaagagtagagaactttcactaagtggaagaaatta |
180 |
Q |
| |
|
|| ||| || ||||||||||| |||||| ||||||||| |||||||| |
|
|
| T |
5102704 |
aa-ccatggagcaagagtagataacttttactaagtgggagaaatta |
5102749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 22 - 137
Target Start/End: Original strand, 36528415 - 36528529
Alignment:
| Q |
22 |
tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca |
121 |
Q |
| |
|
|||| |||| |||||||||||| || || ||||| ||||||||||||| ||||| ||||||| ||||||||||||| |||||||||||||||||| || |
|
|
| T |
36528415 |
tgttgggtatcagagtaacaaagtaaaattacgcaactaaaataagagatgagaatagaggaattgaacacacaata-tttacgtggaaacccctccacg |
36528513 |
T |
|
| Q |
122 |
aataaggggaaaaaac |
137 |
Q |
| |
|
||||||| ||||||| |
|
|
| T |
36528514 |
aataaggaaaaaaaac |
36528529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 377 - 431
Target Start/End: Complemental strand, 30234974 - 30234920
Alignment:
| Q |
377 |
acatgctatttatactagtgaaagagtcatgccccaaccaattgcatttatggca |
431 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||| ||||||||||| |
|
|
| T |
30234974 |
acatgctatttatactagtgaaagagccatgccccaaccaattacatttatggca |
30234920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 149 - 241
Target Start/End: Original strand, 31233730 - 31233821
Alignment:
| Q |
149 |
agtagagaactttcactaagtggaagaaattacaggacctctctaaatacaaggagagtacaattaccactctctcttataaataggagaata |
241 |
Q |
| |
|
||||||||| |||||| |||| ||||||||||| | ||||||||||| ||| |||||||||||| |||||| ||||| |||||| |||||| |
|
|
| T |
31233730 |
agtagagaattttcaccaagttaaagaaattacatggcctctctaaat-caaagagagtacaattgtcactctttcttaaaaatagaagaata |
31233821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0074 (Bit Score: 173; Significance: 9e-93; HSPs: 1)
Name: scaffold0074
Description:
Target: scaffold0074; HSP #1
Raw Score: 173; E-Value: 9e-93
Query Start/End: Original strand, 22 - 311
Target Start/End: Original strand, 27226 - 27508
Alignment:
| Q |
22 |
tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
27226 |
tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagagaaactgaacacacaatactttacgtggaaacccctcaaca |
27325 |
T |
|
| Q |
122 |
aataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaaga-aattacaggac--ctctctaaatacaaggagagtacaattaccac |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || |||||||||||||||||||| |||||||| |
|
|
| T |
27326 |
aataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagacaattacaatacttctctctaaatacaaggagagacaaattacca- |
27424 |
T |
|
| Q |
219 |
tctctcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcact |
311 |
Q |
| |
|
|||||||| ||||||| |||||| ||| |||||||||||||||||||||||||||| ||| |||||||||||||| |||||||| |
|
|
| T |
27425 |
tctctctt-gaaataggtgaatactaac--------actaggagaaacctcacaggagaaactatatttcctctctatatttttcctctcact |
27508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 162; Significance: 3e-86; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 22 - 311
Target Start/End: Complemental strand, 46191546 - 46191266
Alignment:
| Q |
22 |
tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca |
121 |
Q |
| |
|
||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
46191546 |
tgttaggaaccagagtaacaaaatattatcatgcagctaaaataagagacgagaaaagaggaactgaacaca--atattttacgtggaaacccctcaaca |
46191449 |
T |
|
| Q |
122 |
aataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaaga-aattacaggac--ctctctaaatacaaggagagtacaattaccac |
218 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| ||| ||||||||||| |||||||| ||||||| | |
|
|
| T |
46191448 |
aataaggggaaaaaaccacgggacaagagtagagaactttcactaagtggaagacaattacaagacttctctctaaatagaaggagagacaaattacc-c |
46191350 |
T |
|
| Q |
219 |
tctctcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcact |
311 |
Q |
| |
|
|||||||| |||||||||||||| ||| |||||||||||||||||||||||||||| ||| |||||||||||||| |||||||| |
|
|
| T |
46191349 |
tctctctt-gaaataggagaatactaac--------actaggagaaacctcacaggagaaactatatttcctctctatatttttcctctcact |
46191266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 27 - 206
Target Start/End: Original strand, 30697120 - 30697300
Alignment:
| Q |
27 |
ggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataa |
126 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| ||||||| |||||||||||||||||||||||| |
|
|
| T |
30697120 |
ggtactagagtaacaaaatattatcacgcagctaacataagagacgagaaaagaggaacttaacacaaaatattt-acgtggaaacccctcaacaaataa |
30697218 |
T |
|
| Q |
127 |
ggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctc--tctaaatacaaggagag |
206 |
Q |
| |
|
||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| |
|
|
| T |
30697219 |
ggggaaaaagccacgtggcaagagtagagaactttcactaagtggaagaaattacaagacctctttctaaatacaaggagag |
30697300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 22 - 206
Target Start/End: Complemental strand, 4130401 - 4130215
Alignment:
| Q |
22 |
tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca |
121 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||| |||| ||||||||| ||||||||| |
|
|
| T |
4130401 |
tgttaggtacttgagtaacaaaatattatcacgcaactaaaataagtgacgagaaaagaggaactgaacacacaaaattt-acgtggaaatccctcaaca |
4130303 |
T |
|
| Q |
122 |
aataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaaga-aattacaggac--ctctctaaatacaaggagag |
206 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |||||||||||||||||||| |
|
|
| T |
4130302 |
aataaagggaaaaaaccacggggcaagagtagagaactttcactaagtggaagataattacaagacttctctctaaatacaaggagag |
4130215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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