View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9653_high_12 (Length: 365)

Name: NF9653_high_12
Description: NF9653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9653_high_12
NF9653_high_12
[»] chr4 (32 HSPs)
chr4 (1-365)||(33385077-33385441)
chr4 (130-200)||(990528-990598)
chr4 (130-200)||(50857993-50858063)
chr4 (130-200)||(53740163-53740233)
chr4 (132-200)||(15665134-15665202)
chr4 (130-201)||(53739846-53739917)
chr4 (130-200)||(29669416-29669485)
chr4 (130-200)||(45426989-45427059)
chr4 (130-200)||(50858309-50858379)
chr4 (131-200)||(991185-991254)
chr4 (139-207)||(34206056-34206124)
chr4 (144-200)||(43972336-43972392)
chr4 (130-194)||(51469468-51469532)
chr4 (130-200)||(13254364-13254434)
chr4 (130-200)||(22867065-22867135)
chr4 (130-200)||(23018451-23018521)
chr4 (130-200)||(29669731-29669800)
chr4 (130-200)||(56509590-56509660)
chr4 (139-200)||(29734542-29734603)
chr4 (130-199)||(36558519-36558588)
chr4 (139-207)||(34206318-34206386)
chr4 (220-264)||(48843186-48843230)
chr4 (131-265)||(17222720-17222850)
chr4 (130-200)||(991019-991088)
chr4 (130-200)||(43972020-43972090)
chr4 (131-177)||(51470487-51470533)
chr4 (130-200)||(52214596-52214666)
chr4 (130-200)||(53738261-53738331)
chr4 (220-264)||(50857903-50857947)
chr4 (220-264)||(50858219-50858263)
chr4 (220-264)||(51469377-51469421)
chr4 (220-256)||(53738377-53738413)
[»] chr7 (24 HSPs)
chr7 (130-264)||(37272098-37272232)
chr7 (130-264)||(43288181-43288315)
chr7 (123-200)||(1663651-1663727)
chr7 (130-200)||(7135296-7135366)
chr7 (130-200)||(43167946-43168016)
chr7 (132-200)||(40121673-40121741)
chr7 (130-173)||(21557024-21557067)
chr7 (134-213)||(31149026-31149104)
chr7 (134-213)||(31167318-31167396)
chr7 (130-200)||(257320-257390)
chr7 (130-196)||(1661244-1661310)
chr7 (202-264)||(3973052-3973114)
chr7 (131-197)||(6960020-6960086)
chr7 (202-264)||(23838924-23838986)
chr7 (192-249)||(7552452-7552509)
chr7 (189-233)||(6960093-6960137)
chr7 (202-265)||(23721034-23721097)
chr7 (130-200)||(28910013-28910083)
chr7 (220-262)||(29780352-29780394)
chr7 (130-176)||(40121992-40122038)
chr7 (130-200)||(41670565-41670634)
chr7 (220-265)||(40122095-40122140)
chr7 (129-177)||(27585260-27585308)
chr7 (160-200)||(41670849-41670889)
[»] chr8 (16 HSPs)
chr8 (130-264)||(34248276-34248410)
chr8 (130-224)||(34248033-34248128)
chr8 (130-200)||(18905837-18905907)
chr8 (130-200)||(21085201-21085271)
chr8 (130-200)||(23027558-23027628)
chr8 (130-200)||(23027881-23027951)
chr8 (189-264)||(27402527-27402602)
chr8 (130-177)||(38287790-38287837)
chr8 (130-200)||(36997147-36997217)
chr8 (202-264)||(38886993-38887055)
chr8 (132-200)||(21653307-21653376)
chr8 (160-197)||(22277508-22277545)
chr8 (130-195)||(32931387-32931452)
chr8 (189-229)||(27402240-27402280)
chr8 (160-200)||(31766982-31767022)
chr8 (161-205)||(36994016-36994060)
[»] chr5 (22 HSPs)
chr5 (130-264)||(38663164-38663298)
chr5 (130-230)||(29432363-29432463)
chr5 (130-200)||(38131745-38131815)
chr5 (130-246)||(396194-396311)
chr5 (130-202)||(28009850-28009922)
chr5 (130-205)||(30588033-30588108)
chr5 (130-200)||(1028146-1028216)
chr5 (130-200)||(37995687-37995757)
chr5 (132-200)||(873751-873819)
chr5 (130-200)||(13843678-13843748)
chr5 (130-200)||(13843994-13844064)
chr5 (130-200)||(27760056-27760126)
chr5 (139-200)||(28010178-28010239)
chr5 (204-264)||(30587959-30588019)
chr5 (130-200)||(20811435-20811505)
chr5 (130-200)||(20837790-20837860)
chr5 (144-200)||(17016160-17016216)
chr5 (130-177)||(22196379-22196426)
chr5 (130-173)||(39268234-39268277)
chr5 (154-200)||(12595189-12595235)
chr5 (188-233)||(4465014-4465059)
chr5 (208-256)||(24993971-24994020)
[»] chr6 (21 HSPs)
chr6 (167-256)||(11160338-11160427)
chr6 (130-200)||(10418391-10418461)
chr6 (130-200)||(24055162-24055232)
chr6 (130-200)||(30539216-30539286)
chr6 (167-256)||(11198919-11199008)
chr6 (144-200)||(1408992-1409048)
chr6 (130-198)||(8144001-8144068)
chr6 (130-197)||(31926-31993)
chr6 (202-264)||(32023-32084)
chr6 (130-200)||(10733491-10733561)
chr6 (130-200)||(12134536-12134606)
chr6 (130-200)||(19054474-19054544)
chr6 (130-200)||(21043834-21043904)
chr6 (130-200)||(1744895-1744965)
chr6 (130-200)||(19753657-19753727)
chr6 (130-200)||(21067110-21067180)
chr6 (130-200)||(21088901-21088971)
chr6 (130-172)||(28149802-28149844)
chr6 (220-265)||(30539125-30539170)
chr6 (130-174)||(12268806-12268850)
chr6 (189-233)||(26809292-26809336)
[»] chr3 (20 HSPs)
chr3 (130-200)||(41380705-41380775)
chr3 (130-200)||(44573307-44573377)
chr3 (130-200)||(54369020-54369090)
chr3 (139-227)||(24539107-24539195)
chr3 (130-198)||(27219312-27219380)
chr3 (130-200)||(13769344-13769414)
chr3 (130-200)||(43101424-43101494)
chr3 (130-200)||(45443261-45443331)
chr3 (130-199)||(34715508-34715577)
chr3 (130-200)||(4255491-4255561)
chr3 (130-200)||(4256215-4256285)
chr3 (130-200)||(47833715-47833784)
chr3 (130-199)||(3985755-3985824)
chr3 (130-200)||(48685370-48685441)
chr3 (130-200)||(14170052-14170122)
chr3 (130-200)||(24860114-24860183)
chr3 (130-200)||(44573620-44573690)
chr3 (130-200)||(46139213-46139283)
chr3 (130-200)||(50203910-50203980)
chr3 (220-264)||(46139124-46139167)
[»] chr2 (21 HSPs)
chr2 (130-200)||(43169223-43169293)
chr2 (130-197)||(30166132-30166199)
chr2 (131-197)||(3976209-3976275)
chr2 (130-200)||(3977056-3977126)
chr2 (130-200)||(6183419-6183489)
chr2 (130-200)||(18901917-18901987)
chr2 (130-200)||(21213938-21214008)
chr2 (139-200)||(15820163-15820224)
chr2 (130-199)||(23054308-23054377)
chr2 (130-200)||(42768387-42768455)
chr2 (130-200)||(3976524-3976594)
chr2 (130-200)||(7877825-7877895)
chr2 (130-200)||(21214254-21214324)
chr2 (130-200)||(43195765-43195835)
chr2 (220-264)||(25441587-25441631)
chr2 (130-200)||(17509090-17509160)
chr2 (130-200)||(25441677-25441747)
chr2 (130-176)||(39596759-39596805)
chr2 (130-207)||(35249747-35249823)
chr2 (220-264)||(5424925-5424969)
chr2 (130-186)||(11969047-11969103)
[»] chr1 (16 HSPs)
chr1 (130-200)||(4022178-4022248)
chr1 (130-200)||(8520146-8520216)
chr1 (130-200)||(17419768-17419838)
chr1 (128-200)||(45264644-45264716)
chr1 (130-200)||(19937096-19937166)
chr1 (130-200)||(31305692-31305762)
chr1 (130-219)||(19696751-19696839)
chr1 (130-206)||(35891996-35892072)
chr1 (130-193)||(2697384-2697447)
chr1 (130-200)||(20735503-20735573)
chr1 (130-200)||(43423260-43423330)
chr1 (130-200)||(33879831-33879901)
chr1 (130-200)||(33964354-33964424)
chr1 (208-264)||(31305602-31305659)
chr1 (130-191)||(40664200-40664261)
chr1 (220-264)||(2697500-2697544)


Alignment Details
Target: chr4 (Bit Score: 341; Significance: 0; HSPs: 32)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 1 - 365
Target Start/End: Complemental strand, 33385441 - 33385077
Alignment:
Q  1 caggttttccgcctggcttaataactcacaaggttgcttcggttgtattgcttatactctacgattttggtaatgttgaaaatttggtcctaacttatcc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  33385441 caggttttccgcctggcttaataactcacaaggttgcttcggttgtattgcttatactctatgattttggtaatgttgaaaatttggtcctaacttatcc 33385342  T
Q  101 ttataaaactgggttgtattgtctccacttttataaagtcttatcaagagttctatctctccgatgtgggactaaattcactccctgaaagccaacacaa 200  Q
    ||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33385341 ttacaaaactgggttgtaatgtctccacttttataaagtcttatcaagagttctatctctccgatgtgggactaaattcactccctgaaagccaacacaa 33385242  T
Q  201 agcaactcaaatgtcgcaattaggcgactagggatggaccgcaataaaggtggaatatccaacaggtactacttgcttctttgatgttggaaggtctttt 300  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  33385241 agcaactcaaatgtcgcaattaggtgactagggatggaccgcaataaaggcggaatatccaacaggtactacttgcttctttgatgttggaaggtctttt 33385142  T
Q  301 ggtctattgtgggagaagtaggagcgatatggtggcttttatggtggtccaatgctctcttgtgc 365  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  33385141 ggtctattgtgggagaagtaggagcgatatggtggcttttatggtgatccaatgctctcttgtgc 33385077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 130 - 200
Target Start/End: Complemental strand, 990598 - 990528
Alignment:
Q  130 tttataaagtcttatcaagagttctatctctccgatgtgggactaaattcactccctgaaagccaacacaa 200  Q
    |||||||| |||| ||||||||  ||||| |||||||||||||||||||||| |||| |||||||||||||    
T  990598 tttataaactcttctcaagagtgttatctatccgatgtgggactaaattcaccccctcaaagccaacacaa 990528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 130 - 200
Target Start/End: Complemental strand, 50858063 - 50857993
Alignment:
Q  130 tttataaagtcttatcaagagttctatctctccgatgtgggactaaattcactccctgaaagccaacacaa 200  Q
    |||||||| |||| |||||||| |||||| |||||||||||||||||| ||| |||| |||||||||||||    
T  50858063 tttataaaatcttctcaagagtactatctatccgatgtgggactaaatccaccccctcaaagccaacacaa 50857993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 130 - 200
Target Start/End: Complemental strand, 53740233 - 53740163
Alignment:
Q  130 tttataaagtcttatcaagagttctatctctccgatgtgggactaaattcactccctgaaagccaacacaa 200  Q
    |||||||| |||| |||||||| |||||| |||||||||||||||||| ||| |||| |||||||||||||    
T  53740233 tttataaactcttctcaagagtactatctatccgatgtgggactaaatccaccccctcaaagccaacacaa 53740163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 132 - 200
Target Start/End: Complemental strand, 15665202 - 15665134
Alignment:
Q  132 tataaagtcttatcaagagttctatctctccgatgtgggactaaattcactccctgaaagccaacacaa 200  Q
    |||||| |||| |||||||| |||||| |||||||||||||||||| ||| |||| |||||||||||||    
T  15665202 tataaactcttctcaagagtcctatctatccgatgtgggactaaatccaccccctcaaagccaacacaa 15665134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 130 - 201
Target Start/End: Complemental strand, 53739917 - 53739846
Alignment:
Q  130 tttataaagtcttatcaagagttctatctctccgatgtgggactaaattcactccctgaaagccaacacaaa 201  Q
    |||||||| |||| |||||||| |||||| |||||| ||||||||||| ||| |||| ||||||||||||||    
T  53739917 tttataaactcttctcaagagtactatctatccgatatgggactaaatccaccccctcaaagccaacacaaa 53739846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 130 - 200
Target Start/End: Original strand, 29669416 - 29669485
Alignment:
Q  130 tttataaagtcttatcaagagttctatctctccgatgtgggactaaattcactccctgaaagccaacacaa 200  Q
    |||||||| |||| |||||||| |||||| |||||||||||||||||| ||| |||| |||||||||||||    
T  29669416 tttataaactcttctcaagagtgctatctatccgatgtgggactaaatccac-ccctcaaagccaacacaa 29669485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 130 - 200
Target Start/End: Original strand, 45426989 - 45427059
Alignment:
Q  130 tttataaagtcttatcaagagttctatctctccgatgtgggactaaattcactccctgaaagccaacacaa 200  Q
    |||||||| |||| |||||||| |||||| ||||||||||| |||||| ||| |||| |||||||||||||    
T  45426989 tttataaactcttctcaagagtactatctatccgatgtggggctaaatccaccccctcaaagccaacacaa 45427059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 130 - 200
Target Start/End: Complemental strand, 50858379 - 50858309
Alignment:
Q  130 tttataaagtcttatcaagagttctatctctccgatgtgggactaaattcactccctgaaagccaacacaa 200  Q
    |||||||| |||| |||||||| |||||| || ||||||||||||||| ||| |||| |||||||||||||    
T  50858379 tttataaactcttctcaagagtactatctatctgatgtgggactaaatccaccccctcaaagccaacacaa 50858309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 131 - 200
Target Start/End: Complemental strand, 991254 - 991185
Alignment:
Q  131 ttataaagtcttatcaagagttctatctctccgatgtgggactaaattcactccctgaaagccaacacaa 200  Q
    ||||||| |||| ||||||||  ||||| |||||||||||||||||| ||| |||| |||||||||||||    
T  991254 ttataaactcttctcaagagtgttatctatccgatgtgggactaaatccaccccctcaaagccaacacaa 991185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 139 - 207
Target Start/End: Original strand, 34206056 - 34206124
Alignment:
Q  139 tcttatcaagagttctatctctccgatgtgggactaaattcactccctgaaagccaacacaaagcaact 207  Q
    |||||||||||||  |||||  ||||||||||||||||| ||| |||| ||||||||||||| ||||||    
T  34206056 tcttatcaagagtcttatctaaccgatgtgggactaaatccaccccctcaaagccaacacaaggcaact 34206124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 144 - 200
Target Start/End: Complemental strand, 43972392 - 43972336
Alignment:
Q  144 tcaagagttctatctctccgatgtgggactaaattcactccctgaaagccaacacaa 200  Q
    |||||||| |||||| |||||||||||||||||||||| |||| ||| |||||||||    
T  43972392 tcaagagtcctatctatccgatgtgggactaaattcaccccctcaaaaccaacacaa 43972336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 130 - 194
Target Start/End: Complemental strand, 51469532 - 51469468
Alignment:
Q  130 tttataaagtcttatcaagagttctatctctccgatgtgggactaaattcactccctgaaagcca 194  Q
    |||||||| |||| |||||||| |||||| |||||||||||||||||| ||| |||| |||||||    
T  51469532 tttataaactcttctcaagagtcctatctatccgatgtgggactaaatccaccccctcaaagcca 51469468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 130 - 200
Target Start/End: Complemental strand, 13254434 - 13254364
Alignment:
Q  130 tttataaagtcttatcaagagttctatctctccgatgtgggactaaattcactccctgaaagccaacacaa 200  Q
    |||||||| |||| |||| ||| |||||| ||| |||||||||||||| ||| |||| |||||||||||||    
T  13254434 tttataaactcttctcaatagtcctatctatccaatgtgggactaaatccaccccctcaaagccaacacaa 13254364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 130 - 200
Target Start/End: Complemental strand, 22867135 - 22867065
Alignment:
Q  130 tttataaagtcttatcaagagttctatctctccgatgtgggactaaattcactccctgaaagccaacacaa 200  Q
    |||||||| |||| |||||||| |||||| ||||| |||||||||||| ||| |||| ||||||| |||||    
T  22867135 tttataaactcttctcaagagtcctatctatccgacgtgggactaaatccaccccctcaaagccagcacaa 22867065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 130 - 200
Target Start/End: Complemental strand, 23018521 - 23018451
Alignment:
Q  130 tttataaagtcttatcaagagttctatctctccgatgtgggactaaattcactccctgaaagccaacacaa 200  Q
    |||||||| |||| ||||||||  ||||| ||||||||| || ||||||||| |||| |||||||||||||    
T  23018521 tttataaactcttctcaagagtcatatctatccgatgtgagattaaattcacccccttaaagccaacacaa 23018451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 130 - 200
Target Start/End: Original strand, 29669731 - 29669800
Alignment:
Q  130 tttataaagtcttatcaagagttctatctctccgatgtgggactaaattcactccctgaaagccaacacaa 200  Q
    |||||||| |||| |||||||| |||||| || ||||||||||||||| ||| |||| |||||||||||||    
T  29669731 tttataaactcttctcaagagtgctatctatctgatgtgggactaaatccac-ccctcaaagccaacacaa 29669800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 130 - 200
Target Start/End: Complemental strand, 56509660 - 56509590
Alignment:
Q  130 tttataaagtcttatcaagagttctatctctccgatgtgggactaaattcactccctgaaagccaacacaa 200  Q
    |||||||| |||| ||||| || |||||| |||||||| ||||||||| ||| |||| |||||||||||||    
T  56509660 tttataaactcttctcaagggtcctatctatccgatgtaggactaaatccaccccctcaaagccaacacaa 56509590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 139 - 200
Target Start/End: Complemental strand, 29734603 - 29734542
Alignment:
Q  139 tcttatcaagagttctatctctccgatgtgggactaaattcactccctgaaagccaacacaa 200  Q
    |||| |||| ||| |||||| |||||||||||||||||||||| |||| |||| ||||||||    
T  29734603 tcttctcaaaagtcctatctatccgatgtgggactaaattcaccccctcaaagtcaacacaa 29734542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 130 - 199
Target Start/End: Original strand, 36558519 - 36558588
Alignment:
Q  130 tttataaagtcttatcaagagttctatctctccgatgtgggactaaattcactccctgaaagccaacaca 199  Q
    |||||||| |||| |||| |||  ||||| |||||||||||||||||| ||| |||| ||||||||||||    
T  36558519 tttataaactcttctcaaaagtcatatctatccgatgtgggactaaatccaccccctcaaagccaacaca 36558588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 139 - 207
Target Start/End: Original strand, 34206318 - 34206386
Alignment:
Q  139 tcttatcaagagttctatctctccgatgtgggactaaattcactccctgaaagccaacacaaagcaact 207  Q
    |||||||||||||  |||||  |||||||| |||||||| ||| |||| ||||||||||||| ||||||    
T  34206318 tcttatcaagagtcttatctaaccgatgtgagactaaatccaccccctcaaagccaacacaaggcaact 34206386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 264
Target Start/End: Original strand, 48843186 - 48843230
Alignment:
Q  220 ttaggcgactagggatggaccgcaataaaggtggaatatccaaca 264  Q
    |||||||||||||| |||||||||||||||| ||||| |||||||    
T  48843186 ttaggcgactaggggtggaccgcaataaaggcggaatttccaaca 48843230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 131 - 265
Target Start/End: Original strand, 17222720 - 17222850
Alignment:
Q  131 ttataaagtcttatcaagagttctatctctccgatgtgggactaaattcactccctgaaagccaacacaaagcaactcaaatgtcgcaa-ttaggcgact 229  Q
    ||||||| |||| | |||||| |||||| ||| |||||||||||||| ||| |||| |||||     ||| || |  |||| ||||||| ||||||||||    
T  17222720 ttataaactcttcttaagagtgctatctatcctatgtgggactaaatccaccccctcaaagc-----caaggctaaccaaaggtcgcaatttaggcgact 17222814  T
Q  230 agggatggaccgcaataaaggtggaatatccaacag 265  Q
    || |  |||||||||| |||||||||| ||||||||    
T  17222815 agaggcggaccgcaattaaggtggaatttccaacag 17222850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 130 - 200
Target Start/End: Complemental strand, 991088 - 991019
Alignment:
Q  130 tttataaagtcttatcaagagttctatctctccgatgtgggactaaattcactccctgaaagccaacacaa 200  Q
    |||||||| |||| |||||||| |||||| ||||| |||| ||||||| ||| |||| |||||||||||||    
T  991088 tttataaactcttctcaagagtgctatctatccgacgtgg-actaaatccaccccctcaaagccaacacaa 991019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 130 - 200
Target Start/End: Complemental strand, 43972090 - 43972020
Alignment:
Q  130 tttataaagtcttatcaagagttctatctctccgatgtgggactaaattcactccctgaaagccaacacaa 200  Q
    ||||| || |||| |||||||| |||||| ||| | |||||||||||| ||| |||| |||||||||||||    
T  43972090 tttatcaactcttctcaagagtcctatctatccaacgtgggactaaatccacccccttaaagccaacacaa 43972020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 131 - 177
Target Start/End: Complemental strand, 51470533 - 51470487
Alignment:
Q  131 ttataaagtcttatcaagagttctatctctccgatgtgggactaaat 177  Q
    ||||||| |||| |||||||| |||||| ||||||||||||||||||    
T  51470533 ttataaactcttctcaagagtcctatctatccgatgtgggactaaat 51470487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 130 - 200
Target Start/End: Complemental strand, 52214666 - 52214596
Alignment:
Q  130 tttataaagtcttatcaagagttctatctctccgatgtgggactaaattcactccctgaaagccaacacaa 200  Q
    |||||||| |||||||||||||  |||||  || |||||||||||| | ||| |||| |||||||||||||    
T  52214666 tttataaactcttatcaagagtattatctacccaatgtgggactaattccaccccctcaaagccaacacaa 52214596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 130 - 200
Target Start/End: Original strand, 53738261 - 53738331
Alignment:
Q  130 tttataaagtcttatcaagagttctatctctccgatgtgggactaaattcactccctgaaagccaacacaa 200  Q
    |||||||| |||| ||||||||  ||||| | | |||||||||||||| ||| |||| |||||||||||||    
T  53738261 tttataaactcttctcaagagtcttatctattctatgtgggactaaatccaccccctcaaagccaacacaa 53738331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 220 - 264
Target Start/End: Complemental strand, 50857947 - 50857903
Alignment:
Q  220 ttaggcgactagggatggaccgcaataaaggtggaatatccaaca 264  Q
    |||||||||||||| ||||||||||| |||| ||||| |||||||    
T  50857947 ttaggcgactaggggtggaccgcaattaaggcggaatttccaaca 50857903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 220 - 264
Target Start/End: Complemental strand, 50858263 - 50858219
Alignment:
Q  220 ttaggcgactagggatggaccgcaataaaggtggaatatccaaca 264  Q
    |||||||||||||| ||||||||||| |||| ||||| |||||||    
T  50858263 ttaggcgactaggggtggaccgcaattaaggcggaatttccaaca 50858219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 220 - 264
Target Start/End: Complemental strand, 51469421 - 51469377
Alignment:
Q  220 ttaggcgactagggatggaccgcaataaaggtggaatatccaaca 264  Q
    ||||||||||||||  ||||||||||||||| ||||| |||||||    
T  51469421 ttaggcgactaggggcggaccgcaataaaggcggaatttccaaca 51469377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 220 - 256
Target Start/End: Original strand, 53738377 - 53738413
Alignment:
Q  220 ttaggcgactagggatggaccgcaataaaggtggaat 256  Q
    |||||||||||||| |||||||||||||||| |||||    
T  53738377 ttaggcgactaggggtggaccgcaataaaggcggaat 53738413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 87; Significance: 1e-41; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 130 - 264
Target Start/End: Original strand, 37272098 - 37272232
Alignment:
Q  130 tttataaagtcttatcaagagttctatctctccgatgtgggactaaattcactccctgaaagccaacacaaagcaactcaaatgtcgcaattaggcgact 229  Q
    |||||||| ||||||||||||| ||||||  ||||||||||||||||| ||| |||| ||||||||||| | ||||||||||||||||||||||||||||    
T  37272098 tttataaactcttatcaagagtcctatctaaccgatgtgggactaaatccaccccctcaaagccaacacgaggcaactcaaatgtcgcaattaggcgact 37272197  T
Q  230 agggatggaccgcaataaaggtggaatatccaaca 264  Q
    |||| |||||||||||||||| ||||| |||||||    
T  37272198 aggggtggaccgcaataaaggcggaatttccaaca 37272232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 130 - 264
Target Start/End: Complemental strand, 43288315 - 43288181
Alignment:
Q  130 tttataaagtcttatcaagagttctatctctccgatgtgggactaaattcactccctgaaagccaacacaaagcaactcaaatgtcgcaattaggcgact 229  Q
    |||||||| ||||||||||||| ||||||  ||||||||||| ||||| ||| |||| ||||||||||| | ||||| |||||||| |||||||||||||    
T  43288315 tttataaactcttatcaagagtcctatctaaccgatgtgggagtaaatccaccccctcaaagccaacacgaggcaacacaaatgtcacaattaggcgact 43288216  T
Q  230 agggatggaccgcaataaaggtggaatatccaaca 264  Q
    ||||   || ||||||||||||||||| |||||||    
T  43288215 aggggcagatcgcaataaaggtggaatttccaaca 43288181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 123 - 200
Target Start/End: Original strand, 1663651 - 1663727
Alignment:
Q  123 ctccacttttataaagtcttatcaagagttctatctctccgatgtgggactaaattcactccctgaaagccaacacaa 200  Q
    |||| |||||||||| |||| |||||||| |||||| |||||||||||||||||| ||| |||| |||||||||||||    
T  1663651 ctcctcttttataaactcttctcaagagtgctatctatccgatgtgggactaaatccac-ccctcaaagccaacacaa 1663727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 130 - 200
Target Start/End: Original strand, 7135296 - 7135366
Alignment:
Q  130 tttataaagtcttatcaagagttctatctctccgatgtgggactaaattcactccctgaaagccaacacaa 200  Q
    |||||||| |||| |||||||| |||||| ||||||||| |||||||| ||| |||| |||||||||||||    
T  7135296 tttataaactcttctcaagagtcctatctatccgatgtgtgactaaatccaccccctcaaagccaacacaa 7135366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 130 - 200
Target Start/End: Original strand, 43167946 - 43168016
Alignment:
Q  130 tttataaagtcttatcaagagttctatctctccgatgtgggactaaattcactccctgaaagccaacacaa 200  Q
    |||||||| |||| |||||||| |||||| |||||| ||||||||||| ||| |||| |||||||||||||    
T  43167946 tttataaactcttctcaagagtgctatctatccgatttgggactaaatccaccccctcaaagccaacacaa 43168016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 132 - 200
Target Start/End: Original strand, 40121673 - 40121741
Alignment:
Q  132 tataaagtcttatcaagagttctatctctccgatgtgggactaaattcactccctgaaagccaacacaa 200  Q
    |||||| |||| |||||||| |||||| |||||||||| ||||||| ||| |||| |||||||||||||    
T  40121673 tataaactcttctcaagagtactatctatccgatgtggaactaaatccaccccctcaaagccaacacaa 40121741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 130 - 173
Target Start/End: Complemental strand, 21557067 - 21557024
Alignment:
Q  130 tttataaagtcttatcaagagttctatctctccgatgtgggact 173  Q
    |||||||| |||||||||||||||||||| ||||||||||||||    
T  21557067 tttataaactcttatcaagagttctatctatccgatgtgggact 21557024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 134 - 213
Target Start/End: Complemental strand, 31149104 - 31149026
Alignment:
Q  134 taaagtcttatcaagagttctatctctccgatgtgggactaaattcactccctgaaagccaacacaaagcaactcaaatg 213  Q
    |||| ||||||| |||||  ||||| || ||||| ||||||||| ||| |||| ||||||||||||||||||||||||||    
T  31149104 taaactcttatcgagagtcttatctatctgatgtaggactaaatccac-ccctcaaagccaacacaaagcaactcaaatg 31149026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 134 - 213
Target Start/End: Complemental strand, 31167396 - 31167318
Alignment:
Q  134 taaagtcttatcaagagttctatctctccgatgtgggactaaattcactccctgaaagccaacacaaagcaactcaaatg 213  Q
    |||| ||||||| |||||  ||||| || ||||| ||||||||| ||| |||| ||||||||||||||||||||||||||    
T  31167396 taaactcttatcgagagtcttatctatctgatgtaggactaaatccac-ccctcaaagccaacacaaagcaactcaaatg 31167318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 130 - 200
Target Start/End: Original strand, 257320 - 257390
Alignment:
Q  130 tttataaagtcttatcaagagttctatctctccgatgtgggactaaattcactccctgaaagccaacacaa 200  Q
    |||||||| |||| |||||| |  ||||| |||||||||||||||||| ||| |||| |||||||||||||    
T  257320 tttataaactcttctcaagaataatatctatccgatgtgggactaaatccaccccctcaaagccaacacaa 257390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 130 - 196
Target Start/End: Original strand, 1661244 - 1661310
Alignment:
Q  130 tttataaagtcttatcaagagttctatctctccgatgtgggactaaattcactccctgaaagccaac 196  Q
    |||||||| |||| ||||||||| ||||| |||||||||||||||||| ||| || | |||||||||    
T  1661244 tttataaactcttctcaagagttttatctatccgatgtgggactaaatccaccccgtcaaagccaac 1661310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 202 - 264
Target Start/End: Complemental strand, 3973114 - 3973052
Alignment:
Q  202 gcaactcaaatgtcgcaattaggcgactagggatggaccgcaataaaggtggaatatccaaca 264  Q
    ||||| ||||||| ||||||||||| |||||| ||||||||||| |||| ||||| |||||||    
T  3973114 gcaacccaaatgttgcaattaggcggctaggggtggaccgcaatgaaggcggaatttccaaca 3973052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 131 - 197
Target Start/End: Original strand, 6960020 - 6960086
Alignment:
Q  131 ttataaagtcttatcaagagttctatctctccgatgtgggactaaattcactccctgaaagccaaca 197  Q
    ||||||| ||||||||||||| ||||||  ||||||||| ||||||| ||| |||| ||||||||||    
T  6960020 ttataaactcttatcaagagtcctatctaaccgatgtggaactaaatccaccccctcaaagccaaca 6960086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 202 - 264
Target Start/End: Original strand, 23838924 - 23838986
Alignment:
Q  202 gcaactcaaatgtcgcaattaggcgactagggatggaccgcaataaaggtggaatatccaaca 264  Q
    |||||||||||||||||||||||| |||||||| |||  ||||||||||  |||| |||||||    
T  23838924 gcaactcaaatgtcgcaattaggcaactagggacggattgcaataaaggaagaatttccaaca 23838986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 192 - 249
Target Start/End: Complemental strand, 7552509 - 7552452
Alignment:
Q  192 ccaacacaaagcaactcaaatgtcgcaattaggcgactagggatggaccgcaataaag 249  Q
    ||||||| | ||||||||||||||| |||||||||||||| |  ||||||||||||||    
T  7552509 ccaacacgaggcaactcaaatgtcgtaattaggcgactagtggcggaccgcaataaag 7552452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 189 - 233
Target Start/End: Original strand, 6960093 - 6960137
Alignment:
Q  189 aagccaacacaaagcaactcaaatgtcgcaattaggcgactaggg 233  Q
    |||||| ||| | ||||||||||||||||||||||||||||||||    
T  6960093 aagccagcacgaggcaactcaaatgtcgcaattaggcgactaggg 6960137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 202 - 265
Target Start/End: Complemental strand, 23721097 - 23721034
Alignment:
Q  202 gcaactcaaatgtcgcaattaggcgactagggatggaccgcaataaaggtggaatatccaacag 265  Q
    ||||| |||||| |||||||||| | ||||||  |||||||| |||||||||||| ||||||||    
T  23721097 gcaacccaaatgccgcaattaggtggctaggggaggaccgcattaaaggtggaatttccaacag 23721034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 130 - 200
Target Start/End: Complemental strand, 28910083 - 28910013
Alignment:
Q  130 tttataaagtcttatcaagagttctatctctccgatgtgggactaaattcactccctgaaagccaacacaa 200  Q
    |||||||| ||||  ||||||| |||||| ||  |||||||||||||| ||| |||| |||||||||||||    
T  28910083 tttataaactcttcccaagagtcctatctatcttatgtgggactaaatccaccccctcaaagccaacacaa 28910013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 220 - 262
Target Start/End: Complemental strand, 29780394 - 29780352
Alignment:
Q  220 ttaggcgactagggatggaccgcaataaaggtggaatatccaa 262  Q
    ||||||||||||||  ||||||||||||||||||||| |||||    
T  29780394 ttaggcgactaggggcggaccgcaataaaggtggaatttccaa 29780352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 130 - 176
Target Start/End: Original strand, 40121992 - 40122038
Alignment:
Q  130 tttataaagtcttatcaagagttctatctctccgatgtgggactaaa 176  Q
    |||||||| |||| |||||||| |||||| |||||||||||||||||    
T  40121992 tttataaactcttctcaagagtactatctatccgatgtgggactaaa 40122038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 130 - 200
Target Start/End: Complemental strand, 41670634 - 41670565
Alignment:
Q  130 tttataaagtcttatcaagagttctatctctccgatgtgggactaaattcactccctgaaagccaacacaa 200  Q
    |||||||| |||| |||||||| |||||| | |||||||||||||||| | | |||| |||||||||||||    
T  41670634 tttataaactcttctcaagagtactatctattcgatgtgggactaaatccgc-ccctcaaagccaacacaa 41670565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 265
Target Start/End: Original strand, 40122095 - 40122140
Alignment:
Q  220 ttaggcgactagggatggaccgcaataaaggtggaatatccaacag 265  Q
    |||||||||||||| ||||||||||| |||| ||||| ||||||||    
T  40122095 ttaggcgactaggggtggaccgcaattaaggcggaatttccaacag 40122140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 129 - 177
Target Start/End: Complemental strand, 27585308 - 27585260
Alignment:
Q  129 ttttataaagtcttatcaagagttctatctctccgatgtgggactaaat 177  Q
    ||||||||| |||| |||||| | |||||| ||||||||||||||||||    
T  27585308 ttttataaactcttctcaagaatcctatctatccgatgtgggactaaat 27585260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 160 - 200
Target Start/End: Complemental strand, 41670889 - 41670849
Alignment:
Q  160 tccgatgtgggactaaattcactccctgaaagccaacacaa 200  Q
    |||||||||||||||||| ||| |||| |||||||||||||    
T  41670889 tccgatgtgggactaaatccaccccctcaaagccaacacaa 41670849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 75; Significance: 2e-34; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 130 - 264
Target Start/End: Complemental strand, 34248410 - 34248276
Alignment:
Q  130 tttataaagtcttatcaagagttctatctctccgatgtgggactaaattcactccctgaaagccaacacaaagcaactcaaatgtcgcaattaggcgact 229  Q
    |||||||| ||||||||||||| ||||||  || |||||||||||||| ||| |||| ||||||||||||| ||||||||||||||||||||||||||||    
T  34248410 tttataaactcttatcaagagtcctatctaaccaatgtgggactaaatccaccccctcaaagccaacacaaggcaactcaaatgtcgcaattaggcgact 34248311  T
Q  230 agggatggaccgcaataaaggtggaatatccaaca 264  Q
    ||||  |||  |||||||||| ||||| |||||||    
T  34248310 aggggcggattgcaataaaggcggaatttccaaca 34248276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 130 - 224
Target Start/End: Complemental strand, 34248128 - 34248033
Alignment:
Q  130 tttataaagtcttatcaagagttctatctctccgatgtgggactaaattcactccc-tgaaagccaacacaaagcaactcaaatgtcgcaattagg 224  Q
    |||||||| ||||||||||||| ||||||  ||||||||||||||||| ||| ||| | ||||||||||||| |||||||||||||||||||||||    
T  34248128 tttataaactcttatcaagagtcctatctaaccgatgtgggactaaatccacccccctcaaagccaacacaaggcaactcaaatgtcgcaattagg 34248033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 130 - 200
Target Start/End: Complemental strand, 18905907 - 18905837
Alignment:
Q  130 tttataaagtcttatcaagagttctatctctccgatgtgggactaaattcactccctgaaagccaacacaa 200  Q
    |||||||| |||| |||||||| |||||| |||||||||||||||||| ||| |||| |||||||||||||    
T  18905907 tttataaactcttctcaagagtgctatctatccgatgtgggactaaatccaccccctcaaagccaacacaa 18905837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 130 - 200
Target Start/End: Original strand, 21085201 - 21085271
Alignment:
Q  130 tttataaagtcttatcaagagttctatctctccgatgtgggactaaattcactccctgaaagccaacacaa 200  Q
    |||||||| |||| |||||||| |||||| |||||||||||||||||| ||| |||| |||||||||||||    
T  21085201 tttataaactcttctcaagagtgctatctatccgatgtgggactaaatccaccccctcaaagccaacacaa 21085271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 130 - 200
Target Start/End: Original strand, 23027558 - 23027628
Alignment:
Q  130 tttataaagtcttatcaagagttctatctctccgatgtgggactaaattcactccctgaaagccaacacaa 200  Q
    |||||||| |||| ||||||||||||||| || ||||||||||||||| ||| |||| |||||||||||||    
T  23027558 tttataaactcttctcaagagttctatctatctgatgtgggactaaatccaccccctcaaagccaacacaa 23027628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 130 - 200
Target Start/End: Original strand, 23027881 - 23027951
Alignment:
Q  130 tttataaagtcttatcaagagttctatctctccgatgtgggactaaattcactccctgaaagccaacacaa 200  Q
    |||||||  |||| ||||||||||||||| ||| |||||||||||||| ||| |||| |||||||||||||    
T  23027881 tttataagctcttctcaagagttctatctatcctatgtgggactaaatccaccccctcaaagccaacacaa 23027951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 189 - 264
Target Start/End: Original strand, 27402527 - 27402602
Alignment:
Q  189 aagccaacacaaagcaactcaaatgtcgcaattaggcgactagggatggaccgcaataaaggtggaatatccaaca 264  Q
    |||||||||| | |||||||||||||||||| |||| ||||||||  ||| |||| |||||| ||||| |||||||    
T  27402527 aagccaacacgaggcaactcaaatgtcgcaagtaggtgactaggggcggatcgcactaaaggcggaatttccaaca 27402602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 130 - 177
Target Start/End: Original strand, 38287790 - 38287837
Alignment:
Q  130 tttataaagtcttatcaagagttctatctctccgatgtgggactaaat 177  Q
    |||||||| ||||||||||| | |||||| ||||||||||||||||||    
T  38287790 tttataaactcttatcaagaatcctatctatccgatgtgggactaaat 38287837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 130 - 200
Target Start/End: Complemental strand, 36997217 - 36997147
Alignment:
Q  130 tttataaagtcttatcaagagttctatctctccgatgtgggactaaattcactccctgaaagccaacacaa 200  Q
    |||||||| |||||||||||||  |||||  || |||||||||||| | ||| |||| |||||||||||||    
T  36997217 tttataaactcttatcaagagtagtatctacccaatgtgggactaattccaccccctcaaagccaacacaa 36997147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 202 - 264
Target Start/End: Complemental strand, 38887055 - 38886993
Alignment:
Q  202 gcaactcaaatgtcgcaattaggcgactagggatggaccgcaataaaggtggaatatccaaca 264  Q
    ||||| |||||| |||||||||||| |||||| ||||| ||||| |||| ||||| |||||||    
T  38887055 gcaacccaaatgccgcaattaggcggctaggggtggacagcaatgaaggaggaatttccaaca 38886993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 200
Target Start/End: Complemental strand, 21653376 - 21653307
Alignment:
Q  132 tataaagtcttatcaagagttctatctctccgatgtgggactaaattca-ctccctgaaagccaacacaa 200  Q
    |||||| |||| |||||||  |||||| |||||||||||||||||| || | |||| |||||||||||||    
T  21653376 tataaactcttctcaagagcactatctatccgatgtgggactaaatccacccccctcaaagccaacacaa 21653307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 197
Target Start/End: Complemental strand, 22277545 - 22277508
Alignment:
Q  160 tccgatgtgggactaaattcactccctgaaagccaaca 197  Q
    |||||||||||||||||||||| |||| ||||||||||    
T  22277545 tccgatgtgggactaaattcaccccctcaaagccaaca 22277508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 130 - 195
Target Start/End: Complemental strand, 32931452 - 32931387
Alignment:
Q  130 tttataaagtcttatcaagagttctatctctccgatgtgggactaaattcactccctgaaagccaa 195  Q
    |||||||| |||| |||||| |  ||||| |||||||||||||||||| ||| |||| ||||||||    
T  32931452 tttataaactcttctcaagaatgatatctatccgatgtgggactaaatccaccccctcaaagccaa 32931387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 189 - 229
Target Start/End: Original strand, 27402240 - 27402280
Alignment:
Q  189 aagccaacacaaagcaactcaaatgtcgcaattaggcgact 229  Q
    |||||||||| | ||||||||||||| ||||||||||||||    
T  27402240 aagccaacacgaggcaactcaaatgttgcaattaggcgact 27402280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 160 - 200
Target Start/End: Complemental strand, 31767022 - 31766982
Alignment:
Q  160 tccgatgtgggactaaattcactccctgaaagccaacacaa 200  Q
    |||||||||||||||||| ||| |||| |||||||||||||    
T  31767022 tccgatgtgggactaaatccaccccctcaaagccaacacaa 31766982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 161 - 205
Target Start/End: Original strand, 36994016 - 36994060
Alignment:
Q  161 ccgatgtgggactaaattcactccctgaaagccaacacaaagcaa 205  Q
    ||||||||||||||||| ||| |||| ||||||||||||| ||||    
T  36994016 ccgatgtgggactaaatccaccccctcaaagccaacacaaggcaa 36994060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 63; Significance: 3e-27; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 130 - 264
Target Start/End: Complemental strand, 38663298 - 38663164
Alignment:
Q  130 tttataaagtcttatcaagagttctatctctccgatgtgggactaaattcactccctgaaagccaacacaaagcaactcaaatgtcgcaattaggcgact 229  Q
    |||||||| ||||||||||||| ||||||  | ||||||||||||||| ||| |||| ||||||||||| | ||||||||||||||||||||||||||||    
T  38663298 tttataaactcttatcaagagtcctatcttactgatgtgggactaaatccaccccctcaaagccaacacgaggcaactcaaatgtcgcaattaggcgact 38663199  T
Q  230 agggatggaccgcaataaaggtggaatatccaaca 264  Q
     |||   || ||||||| ||||| ||| |||||||    
T  38663198 gggggcagatcgcaatagaggtgaaatttccaaca 38663164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 130 - 230
Target Start/End: Complemental strand, 29432463 - 29432363
Alignment:
Q  130 tttataaagtcttatcaagagttctatctctccgatgtgggactaaattcactccctgaaagccaacacaaagcaactcaaatgtcgcaattaggcgact 229  Q
    |||||||| ||||||||||||| ||||||  || |||||||||||||| ||| |||| ||||||||||| | ||||||||||||||||||||||||||||    
T  29432463 tttataaactcttatcaagagtcctatctaaccaatgtgggactaaatccaccccctcaaagccaacacgaggcaactcaaatgtcgcaattaggcgact 29432364  T
Q  230 a 230  Q
    |    
T  29432363 a 29432363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 130 - 200
Target Start/End: Complemental strand, 38131815 - 38131745
Alignment:
Q  130 tttataaagtcttatcaagagttctatctctccgatgtgggactaaattcactccctgaaagccaacacaa 200  Q
    |||||||| |||| |||||||| |||||| |||||||||||||||||| |||||||| |||||||||||||    
T  38131815 tttataaactcttctcaagagtcctatctatccgatgtgggactaaatccactccctcaaagccaacacaa 38131745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 130 - 246
Target Start/End: Complemental strand, 396311 - 396194
Alignment:
Q  130 tttataaagtcttatcaagagttctatctctccgatgtgggactaaattca-ctccctgaaagccaacacaaagcaactcaaatgtcgcaattaggcgac 228  Q
    |||||||||||||||||||||| |||||| | | |||||||||||||| || | |||| ||||||||||||  ||||  ||||| | ||||||||||||     
T  396311 tttataaagtcttatcaagagtcctatctattcaatgtgggactaaatccacccccctcaaagccaacacatggcaagccaaatattgcaattaggcgat 396212  T
Q  229 tagggatggaccgcaata 246  Q
    ||||| | ||||||||||    
T  396211 taggggttgaccgcaata 396194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 130 - 202
Target Start/End: Original strand, 28009850 - 28009922
Alignment:
Q  130 tttataaagtcttatcaagagttctatctctccgatgtgggactaaattcactccctgaaagccaacacaaag 202  Q
    |||||||| |||| ||||||||||||||| || ||||||||||||||| ||| |||| |||||||||||||||    
T  28009850 tttataaactcttctcaagagttctatctatctgatgtgggactaaatccacgccctcaaagccaacacaaag 28009922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 130 - 205
Target Start/End: Complemental strand, 30588108 - 30588033
Alignment:
Q  130 tttataaagtcttatcaagagttctatctctccgatgtgggactaaattcactccctgaaagccaacacaaagcaa 205  Q
    |||||||| ||||||||||||||||||||  ||||||||||||||||| ||| |||| |||||||| |||| ||||    
T  30588108 tttataaactcttatcaagagttctatctaaccgatgtgggactaaatccaccccctcaaagccaatacaaggcaa 30588033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 130 - 200
Target Start/End: Original strand, 1028146 - 1028216
Alignment:
Q  130 tttataaagtcttatcaagagttctatctctccgatgtgggactaaattcactccctgaaagccaacacaa 200  Q
    |||||||| |||| |||||||| |||||| |||||||||||||||||| ||| |||| |||||||||||||    
T  1028146 tttataaactcttctcaagagtgctatctatccgatgtgggactaaatccaccccctcaaagccaacacaa 1028216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 130 - 200
Target Start/End: Original strand, 37995687 - 37995757
Alignment:
Q  130 tttataaagtcttatcaagagttctatctctccgatgtgggactaaattcactccctgaaagccaacacaa 200  Q
    |||||||| |||| |||||||| |||||| |||||||||||||||||| ||| |||| |||||||||||||    
T  37995687 tttataaactcttctcaagagtgctatctatccgatgtgggactaaatccaccccctcaaagccaacacaa 37995757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 132 - 200
Target Start/End: Original strand, 873751 - 873819
Alignment:
Q  132 tataaagtcttatcaagagttctatctctccgatgtgggactaaattcactccctgaaagccaacacaa 200  Q
    |||||| |||| |||||||| |||||| |||||||||||||||||| ||| |||| |||||||||||||    
T  873751 tataaactcttctcaagagtcctatctatccgatgtgggactaaatccaccccctcaaagccaacacaa 873819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 130 - 200
Target Start/End: Complemental strand, 13843748 - 13843678
Alignment:
Q  130 tttataaagtcttatcaagagttctatctctccgatgtgggactaaattcactccctgaaagccaacacaa 200  Q
    |||||||| |||| |||||||| |||||| || ||||||||||||||| ||| |||| |||||||||||||    
T  13843748 tttataaactcttctcaagagtactatctatctgatgtgggactaaatccaccccctcaaagccaacacaa 13843678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 130 - 200
Target Start/End: Complemental strand, 13844064 - 13843994
Alignment:
Q  130 tttataaagtcttatcaagagttctatctctccgatgtgggactaaattcactccctgaaagccaacacaa 200  Q
    |||||||| |||| |||||||| |||||| || ||||||||||||||| ||| |||| |||||||||||||    
T  13844064 tttataaactcttctcaagagtactatctatcagatgtgggactaaatccaccccctcaaagccaacacaa 13843994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 130 - 200
Target Start/End: Complemental strand, 27760126 - 27760056
Alignment:
Q  130 tttataaagtcttatcaagagttctatctctccgatgtgggactaaattcactccctgaaagccaacacaa 200  Q
    |||| ||| |||| |||||||| |||||| |||||||||||||||||| ||| |||| |||||||||||||    
T  27760126 tttagaaactcttctcaagagtcctatctatccgatgtgggactaaatccaccccctcaaagccaacacaa 27760056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 139 - 200
Target Start/End: Original strand, 28010178 - 28010239
Alignment:
Q  139 tcttatcaagagttctatctctccgatgtgggactaaattcactccctgaaagccaacacaa 200  Q
    |||| ||||||||||||||| ||| |||||||||||||| ||| |||| |||||||||||||    
T  28010178 tcttctcaagagttctatctatcctatgtgggactaaatccaccccctcaaagccaacacaa 28010239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 204 - 264
Target Start/End: Complemental strand, 30588019 - 30587959
Alignment:
Q  204 aactcaaatgtcgcaattaggcgactagggatggaccgcaataaaggtggaatatccaaca 264  Q
    |||||||||||||||||| ||||||||||| |||| |||||||||||  |||| |||||||    
T  30588019 aactcaaatgtcgcaattgggcgactaggggtggatcgcaataaaggcagaatttccaaca 30587959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 130 - 200
Target Start/End: Complemental strand, 20811505 - 20811435
Alignment:
Q  130 tttataaagtcttatcaagagttctatctctccgatgtgggactaaattcactccctgaaagccaacacaa 200  Q
    |||||||| |||| ||||||||  ||||| ||||| |||||||||||| ||| |||| |||||||||||||    
T  20811505 tttataaaatcttctcaagagtgttatctatccgaagtgggactaaatccaccccctcaaagccaacacaa 20811435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 130 - 200
Target Start/End: Complemental strand, 20837860 - 20837790
Alignment:
Q  130 tttataaagtcttatcaagagttctatctctccgatgtgggactaaattcactccctgaaagccaacacaa 200  Q
    |||||||| |||| ||||||||  ||||| ||||| |||||||||||| ||| |||| |||||||||||||    
T  20837860 tttataaaatcttctcaagagtgttatctatccgaagtgggactaaatccaccccctcaaagccaacacaa 20837790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 144 - 200
Target Start/End: Original strand, 17016160 - 17016216
Alignment:
Q  144 tcaagagttctatctctccgatgtgggactaaattcactccctgaaagccaacacaa 200  Q
    |||||||| |||||| || ||||||||||||||| ||| |||| |||||||||||||    
T  17016160 tcaagagtcctatctatctgatgtgggactaaatccaccccctcaaagccaacacaa 17016216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 130 - 177
Target Start/End: Original strand, 22196379 - 22196426
Alignment:
Q  130 tttataaagtcttatcaagagttctatctctccgatgtgggactaaat 177  Q
    |||||||| |||| |||||||| |||||| ||||||||||||||||||    
T  22196379 tttataaactcttctcaagagtactatctatccgatgtgggactaaat 22196426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 130 - 173
Target Start/End: Complemental strand, 39268277 - 39268234
Alignment:
Q  130 tttataaagtcttatcaagagttctatctctccgatgtgggact 173  Q
    |||||||| |||||||||||||| ||||| ||||||||||||||    
T  39268277 tttataaactcttatcaagagttttatctatccgatgtgggact 39268234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 154 - 200
Target Start/End: Original strand, 12595189 - 12595235
Alignment:
Q  154 tatctctccgatgtgggactaaattcactccctgaaagccaacacaa 200  Q
    ||||| |||||||||||||||||| ||| |||| |||||||||||||    
T  12595189 tatctatccgatgtgggactaaatccaccccctcaaagccaacacaa 12595235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 233
Target Start/End: Original strand, 4465014 - 4465059
Alignment:
Q  188 aaagccaacacaaagcaactcaaatgtcgcaattaggcgactaggg 233  Q
    ||||||||||| | ||| |||||||||| |||||||||||||||||    
T  4465014 aaagccaacacgaggcagctcaaatgtcacaattaggcgactaggg 4465059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 208 - 256
Target Start/End: Complemental strand, 24994020 - 24993971
Alignment:
Q  208 caaatgtcgcaatt-aggcgactagggatggaccgcaataaaggtggaat 256  Q
    |||||||||||||| |||||| |||||  |||||||||||||||||||||    
T  24994020 caaatgtcgcaatttaggcgattaggggcggaccgcaataaaggtggaat 24993971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 4e-17; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 167 - 256
Target Start/End: Complemental strand, 11160427 - 11160338
Alignment:
Q  167 tgggactaaattcactccctgaaagccaacacaaagcaactcaaatgtcgcaattaggcgactagggatggaccgcaataaaggtggaat 256  Q
    ||||||||||| ||| |||| |||||||||||||  |||||||||||| ||| ||| |||||||||||| || ||||||||||| |||||    
T  11160427 tgggactaaatccaccccctcaaagccaacacaagacaactcaaatgtagcatttaagcgactagggatagatcgcaataaaggcggaat 11160338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 130 - 200
Target Start/End: Original strand, 10418391 - 10418461
Alignment:
Q  130 tttataaagtcttatcaagagttctatctctccgatgtgggactaaattcactccctgaaagccaacacaa 200  Q
    |||||||| ||| ||||||||| |||||| |||||||||||||||||| ||| |||| |||||||||||||    
T  10418391 tttataaactctcatcaagagtgctatctatccgatgtgggactaaatccaccccctcaaagccaacacaa 10418461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 130 - 200
Target Start/End: Original strand, 24055162 - 24055232
Alignment:
Q  130 tttataaagtcttatcaagagttctatctctccgatgtgggactaaattcactccctgaaagccaacacaa 200  Q
    |||||||| |||| |||||||| |||||| |||||||||||||||||| ||| |||| |||||||||||||    
T  24055162 tttataaactcttctcaagagtgctatctatccgatgtgggactaaatccaccccctcaaagccaacacaa 24055232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 130 - 200
Target Start/End: Complemental strand, 30539286 - 30539216
Alignment:
Q  130 tttataaagtcttatcaagagttctatctctccgatgtgggactaaattcactccctgaaagccaacacaa 200  Q
    |||||||| |||||||||||||  ||||| |||||||||||||||||||||| |||| ||| |||||||||    
T  30539286 tttataaactcttatcaagagtcttatctatccgatgtgggactaaattcaccccctcaaaaccaacacaa 30539216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 167 - 256
Target Start/End: Complemental strand, 11199008 - 11198919
Alignment:
Q  167 tgggactaaattcactccctgaaagccaacacaaagcaactcaaatgtcgcaattaggcgactagggatggaccgcaataaaggtggaat 256  Q
    ||||||||||| ||| |||| |||||||||||||  |||||||||||||||| ||| |||||||||||   | ||||||||||| |||||    
T  11199008 tgggactaaatccaccccctcaaagccaacacaagacaactcaaatgtcgcatttaagcgactagggacatatcgcaataaaggcggaat 11198919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 144 - 200
Target Start/End: Complemental strand, 1409048 - 1408992
Alignment:
Q  144 tcaagagttctatctctccgatgtgggactaaattcactccctgaaagccaacacaa 200  Q
    |||||||| |||||| |||||||||||||||||| ||| |||| |||||||||||||    
T  1409048 tcaagagtcctatctatccgatgtgggactaaatccaccccctcaaagccaacacaa 1408992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 130 - 198
Target Start/End: Complemental strand, 8144068 - 8144001
Alignment:
Q  130 tttataaagtcttatcaagagttctatctctccgatgtgggactaaattcactccctgaaagccaacac 198  Q
    |||||||| |||| |||||||| |||||| |||||||||||||||||| ||| |||| |||||||||||    
T  8144068 tttataaactcttctcaagagtgctatctatccgatgtgggactaaatccac-ccctcaaagccaacac 8144001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 130 - 197
Target Start/End: Original strand, 31926 - 31993
Alignment:
Q  130 tttataaagtcttatcaagagttctatctctccgatgtgggactaaattcactccctgaaagccaaca 197  Q
    |||||||| |||||||||||||  ||||| |||||||| ||||||||| ||| |||| ||||||||||    
T  31926 tttataaactcttatcaagagtcttatctatccgatgttggactaaatccaccccctcaaagccaaca 31993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 202 - 264
Target Start/End: Original strand, 32023 - 32084
Alignment:
Q  202 gcaactcaaatgtcgcaattaggcgactagggatggaccgcaataaaggtggaatatccaaca 264  Q
    |||||| ||||| |||||||||| |||||||| ||||| |||||||||||||||| |||||||    
T  32023 gcaacttaaatgccgcaattaggtgactaggggtggac-gcaataaaggtggaatttccaaca 32084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 130 - 200
Target Start/End: Original strand, 10733491 - 10733561
Alignment:
Q  130 tttataaagtcttatcaagagttctatctctccgatgtgggactaaattcactccctgaaagccaacacaa 200  Q
    |||||||| |||| ||||||||  ||||| ||| |||||||||||||| ||| |||| |||||||||||||    
T  10733491 tttataaactcttctcaagagtgttatctgtccaatgtgggactaaatccaccccctcaaagccaacacaa 10733561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 130 - 200
Target Start/End: Original strand, 12134536 - 12134606
Alignment:
Q  130 tttataaagtcttatcaagagttctatctctccgatgtgggactaaattcactccctgaaagccaacacaa 200  Q
    |||||||| |||| |||||||| |||||| |||||||||||||||| | ||| || | |||||||||||||    
T  12134536 tttataaactcttctcaagagtgctatctatccgatgtgggactaagtccaccccgtcaaagccaacacaa 12134606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 130 - 200
Target Start/End: Complemental strand, 19054544 - 19054474
Alignment:
Q  130 tttataaagtcttatcaagagttctatctctccgatgtgggactaaattcactccctgaaagccaacacaa 200  Q
    |||||||| |||| ||||||||  ||||| |||||||||||||||| | ||| |||| |||||||||||||    
T  19054544 tttataaactcttctcaagagtgttatctatccgatgtgggactaattccaccccctcaaagccaacacaa 19054474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 130 - 200
Target Start/End: Original strand, 21043834 - 21043904
Alignment:
Q  130 tttataaagtcttatcaagagttctatctctccgatgtgggactaaattcactccctgaaagccaacacaa 200  Q
    |||||||| |||| |||||||| |||||| |||||| ||||||||||| ||| |||| ||||| |||||||    
T  21043834 tttataaactcttctcaagagtgctatctatccgatatgggactaaatccaccccctcaaagcaaacacaa 21043904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 130 - 200
Target Start/End: Original strand, 1744895 - 1744965
Alignment:
Q  130 tttataaagtcttatcaagagttctatctctccgatgtgggactaaattcactccctgaaagccaacacaa 200  Q
    |||||||| |||| |||||||| |||||| ||| |||||||||||| | ||| |||| ||||| |||||||    
T  1744895 tttataaactcttttcaagagtactatctatccaatgtgggactaactccaccccctcaaagcaaacacaa 1744965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 130 - 200
Target Start/End: Original strand, 19753657 - 19753727
Alignment:
Q  130 tttataaagtcttatcaagagttctatctctccgatgtgggactaaattcactccctgaaagccaacacaa 200  Q
    |||||||| |||| |||||||| |||||| | | |||||||||||||| ||| |||| ||||| |||||||    
T  19753657 tttataaactcttctcaagagtcctatctataccatgtgggactaaatccaccccctcaaagctaacacaa 19753727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 130 - 200
Target Start/End: Original strand, 21067110 - 21067180
Alignment:
Q  130 tttataaagtcttatcaagagttctatctctccgatgtgggactaaattcactccctgaaagccaacacaa 200  Q
    |||||||| |||| |||||| | |||||| |||||| ||||||||||| ||| |||| ||||| |||||||    
T  21067110 tttataaactcttctcaagaatgctatctatccgatatgggactaaatccaccccctcaaagcaaacacaa 21067180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 130 - 200
Target Start/End: Original strand, 21088901 - 21088971
Alignment:
Q  130 tttataaagtcttatcaagagttctatctctccgatgtgggactaaattcactccctgaaagccaacacaa 200  Q
    |||||||| |||| |||||| | |||||| |||||| ||||||||||| ||| |||| ||||| |||||||    
T  21088901 tttataaactcttctcaagaatgctatctatccgatatgggactaaatccaccccctcaaagcaaacacaa 21088971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 130 - 172
Target Start/End: Complemental strand, 28149844 - 28149802
Alignment:
Q  130 tttataaagtcttatcaagagttctatctctccgatgtgggac 172  Q
    |||||||| |||||||||||||| ||||| |||||||||||||    
T  28149844 tttataaactcttatcaagagttttatctatccgatgtgggac 28149802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 265
Target Start/End: Complemental strand, 30539170 - 30539125
Alignment:
Q  220 ttaggcgactagggatggaccgcaataaaggtggaatatccaacag 265  Q
    ||||||||||||||  ||||||||||||||| ||||| ||||||||    
T  30539170 ttaggcgactaggggcggaccgcaataaaggcggaatttccaacag 30539125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 130 - 174
Target Start/End: Complemental strand, 12268850 - 12268806
Alignment:
Q  130 tttataaagtcttatcaagagttctatctctccgatgtgggacta 174  Q
    |||||||| |||||||||||||| ||||| |||||| ||||||||    
T  12268850 tttataaactcttatcaagagttatatctatccgatttgggacta 12268806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 189 - 233
Target Start/End: Original strand, 26809292 - 26809336
Alignment:
Q  189 aagccaacacaaagcaactcaaatgtcgcaattaggcgactaggg 233  Q
    ||||||||||||  ||||||||||||||| ||| |||||||||||    
T  26809292 aagccaacacaacacaactcaaatgtcgcgatttggcgactaggg 26809336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 130 - 200
Target Start/End: Complemental strand, 41380775 - 41380705
Alignment:
Q  130 tttataaagtcttatcaagagttctatctctccgatgtgggactaaattcactccctgaaagccaacacaa 200  Q
    |||||||| |||| |||||||| |||||| |||||||||||||||||| ||| |||| |||||||||||||    
T  41380775 tttataaactcttctcaagagtgctatctatccgatgtgggactaaatccaccccctcaaagccaacacaa 41380705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 130 - 200
Target Start/End: Complemental strand, 44573377 - 44573307
Alignment:
Q  130 tttataaagtcttatcaagagttctatctctccgatgtgggactaaattcactccctgaaagccaacacaa 200  Q
    |||||||| |||| |||||||| |||||| |||||||||||||||||| ||| |||| |||||||||||||    
T  44573377 tttataaactcttctcaagagtactatctatccgatgtgggactaaatccaccccctcaaagccaacacaa 44573307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 130 - 200
Target Start/End: Complemental strand, 54369090 - 54369020
Alignment:
Q  130 tttataaagtcttatcaagagttctatctctccgatgtgggactaaattcactccctgaaagccaacacaa 200  Q
    |||||||| |||| |||||||| |||||| |||||||||||||||||| ||| |||| |||||||||||||    
T  54369090 tttataaactcttctcaagagtcctatctatccgatgtgggactaaatccaccccctcaaagccaacacaa 54369020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 139 - 227
Target Start/End: Complemental strand, 24539195 - 24539107
Alignment:
Q  139 tcttatcaagagttctatctctccgatgtgggactaaattcactccctgaaagccaacacaaagcaactcaaatgtcgcaattaggcga 227  Q
    |||||||||||||  |||||  | ||||| ||||||||| ||| |||| ||||||||||| | |||||||||||||| |||||||||||    
T  24539195 tcttatcaagagtcttatctaactgatgtaggactaaatccaccccctcaaagccaacacgaggcaactcaaatgtcacaattaggcga 24539107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 130 - 198
Target Start/End: Complemental strand, 27219380 - 27219312
Alignment:
Q  130 tttataaagtcttatcaagagttctatctctccgatgtgggactaaattcactccctgaaagccaacac 198  Q
    |||||||| |||| |||||||| |||||| |||||||||||||||||| ||| |||| |||||||||||    
T  27219380 tttataaactcttctcaagagtgctatctatccgatgtgggactaaatccaccccctcaaagccaacac 27219312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 130 - 200
Target Start/End: Original strand, 13769344 - 13769414
Alignment:
Q  130 tttataaagtcttatcaagagttctatctctccgatgtgggactaaattcactccctgaaagccaacacaa 200  Q
    |||||||| |||| |||||||| |||||| ||| |||||||||||||| ||| |||| |||||||||||||    
T  13769344 tttataaactcttctcaagagtgctatctatccaatgtgggactaaatccaccccctcaaagccaacacaa 13769414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 130 - 200
Target Start/End: Original strand, 43101424 - 43101494
Alignment:
Q  130 tttataaagtcttatcaagagttctatctctccgatgtgggactaaattcactccctgaaagccaacacaa 200  Q
    |||||||| |||| |||||||| |||||| || ||||||||||||||| ||| |||| |||||||||||||    
T  43101424 tttataaactcttctcaagagtcctatctatctgatgtgggactaaatccaccccctcaaagccaacacaa 43101494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 130 - 200
Target Start/End: Complemental strand, 45443331 - 45443261
Alignment:
Q  130 tttataaagtcttatcaagagttctatctctccgatgtgggactaaattcactccctgaaagccaacacaa 200  Q
    |||||||| |||| |||||||| |||||| ||| |||||||||||||| ||| |||| |||||||||||||    
T  45443331 tttataaactcttctcaagagtgctatctatccaatgtgggactaaatccaccccctcaaagccaacacaa 45443261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 130 - 199
Target Start/End: Original strand, 34715508 - 34715577
Alignment:
Q  130 tttataaagtcttatcaagagttctatctctccgatgtgggactaaattcactccctgaaagccaacaca 199  Q
    |||||||| |||| |||| ||| |||||| |||||||||||||||||| ||| |||| ||||||||||||    
T  34715508 tttataaactcttctcaaaagtgctatctatccgatgtgggactaaatccaccccctcaaagccaacaca 34715577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 130 - 200
Target Start/End: Complemental strand, 4255561 - 4255491
Alignment:
Q  130 tttataaagtcttatcaagagttctatctctccgatgtgggactaaattcactccctgaaagccaacacaa 200  Q
    |||||||| |||| |||||||| |||||  || ||||||||||||||| ||| |||| |||||||||||||    
T  4255561 tttataaattcttctcaagagtgctatccatctgatgtgggactaaatccaccccctcaaagccaacacaa 4255491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 130 - 200
Target Start/End: Complemental strand, 4256285 - 4256215
Alignment:
Q  130 tttataaagtcttatcaagagttctatctctccgatgtgggactaaattcactccctgaaagccaacacaa 200  Q
    |||||||| |||| ||||||||  ||||  |||||||||||||||||| ||| |||| |||||||||||||    
T  4256285 tttataaactcttctcaagagtgttatccatccgatgtgggactaaatccaccccctcaaagccaacacaa 4256215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 130 - 200
Target Start/End: Original strand, 47833715 - 47833784
Alignment:
Q  130 tttataaagtcttatcaagagttctatctctccgatgtgggactaaattcactccctgaaagccaacacaa 200  Q
    ||||||||  ||| |||||||| |||||| |||||||||||||||||| ||| |||| |||||||||||||    
T  47833715 tttataaacacttctcaagagtcctatctatccgatgtgggactaaatccac-ccctcaaagccaacacaa 47833784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 130 - 199
Target Start/End: Complemental strand, 3985824 - 3985755
Alignment:
Q  130 tttataaagtcttatcaagagttctatctctccgatgtgggactaaattcactccctgaaagccaacaca 199  Q
    |||||||| |||| |||| |||  ||||| |||||||||||||||||| ||| |||| ||||||||||||    
T  3985824 tttataaactcttctcaaaagtcatatctatccgatgtgggactaaatccaccccctcaaagccaacaca 3985755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 130 - 200
Target Start/End: Original strand, 48685370 - 48685441
Alignment:
Q  130 tttataaagtcttatcaagagttctatctctccgatgtgggactaaattca-ctccctgaaagccaacacaa 200  Q
    |||||||| |||| |||||||| |||| | |||||||||||||||||| || | |||| |||||||||||||    
T  48685370 tttataaactcttctcaagagtactatatatccgatgtgggactaaatccacccccctcaaagccaacacaa 48685441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 130 - 200
Target Start/End: Original strand, 14170052 - 14170122
Alignment:
Q  130 tttataaagtcttatcaagagttctatctctccgatgtgggactaaattcactccctgaaagccaacacaa 200  Q
    |||||||| |||| ||||||||  ||| | |||||||||||||||||| ||  |||| |||||||||||||    
T  14170052 tttataaaatcttctcaagagtgttatttatccgatgtgggactaaatccagcccctcaaagccaacacaa 14170122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 130 - 200
Target Start/End: Original strand, 24860114 - 24860183
Alignment:
Q  130 tttataaagtcttatcaagagttctatctctccgatgtgggactaaattcactccctgaaagccaacacaa 200  Q
    |||||||| |||| |||||||| |||| | |||||||||| ||||||| ||| |||| |||||||||||||    
T  24860114 tttataaactcttctcaagagtcctatttatccgatgtgg-actaaatccaccccctcaaagccaacacaa 24860183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 130 - 200
Target Start/End: Complemental strand, 44573690 - 44573620
Alignment:
Q  130 tttataaagtcttatcaagagttctatctctccgatgtgggactaaattcactccctgaaagccaacacaa 200  Q
    |||||||| |||| |||||| || ||||| ||  |||||||||||||| ||| |||| |||||||||||||    
T  44573690 tttataaactcttctcaagatttttatctatcttatgtgggactaaatccaccccctcaaagccaacacaa 44573620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 130 - 200
Target Start/End: Complemental strand, 46139283 - 46139213
Alignment:
Q  130 tttataaagtcttatcaagagttctatctctccgatgtgggactaaattcactccctgaaagccaacacaa 200  Q
    |||||||| | || ||||||||  ||||| ||| |||||| ||||||||||| |||| |||||||||||||    
T  46139283 tttataaacttttctcaagagtgttatctatccaatgtggaactaaattcaccccctcaaagccaacacaa 46139213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 130 - 200
Target Start/End: Original strand, 50203910 - 50203980
Alignment:
Q  130 tttataaagtcttatcaagagttctatctctccgatgtgggactaaattcactccctgaaagccaacacaa 200  Q
    |||||||| |||| ||||||||  ||||| ||||||||| |||||||  ||| |||| |||||||||||||    
T  50203910 tttataaactcttctcaagagtcttatctatccgatgtgagactaaacccaccccctcaaagccaacacaa 50203980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 220 - 264
Target Start/End: Complemental strand, 46139167 - 46139124
Alignment:
Q  220 ttaggcgactagggatggaccgcaataaaggtggaatatccaaca 264  Q
    ||||||||||||||||||||| |||| |||||||||| |||||||    
T  46139167 ttaggcgactagggatggacc-caattaaggtggaatttccaaca 46139124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 130 - 200
Target Start/End: Complemental strand, 43169293 - 43169223
Alignment:
Q  130 tttataaagtcttatcaagagttctatctctccgatgtgggactaaattcactccctgaaagccaacacaa 200  Q
    |||||||| |||| |||||||| |||||| |||||||||||||||||| ||| |||| |||||||||||||    
T  43169293 tttataaactcttctcaagagtactatctatccgatgtgggactaaatccaccccctcaaagccaacacaa 43169223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 130 - 197
Target Start/End: Original strand, 30166132 - 30166199
Alignment:
Q  130 tttataaagtcttatcaagagttctatctctccgatgtgggactaaattcactccctgaaagccaaca 197  Q
    |||||||| |||| |||||||| |||||| |||||||||||||||||| ||| |||| ||||||||||    
T  30166132 tttataaactcttctcaagagtgctatctatccgatgtgggactaaatccaccccctcaaagccaaca 30166199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 131 - 197
Target Start/End: Original strand, 3976209 - 3976275
Alignment:
Q  131 ttataaagtcttatcaagagttctatctctccgatgtgggactaaattcactccctgaaagccaaca 197  Q
    ||||||| |||| |||||||| |||||| |||||||||||||||||| ||| |||| ||||||||||    
T  3976209 ttataaactcttctcaagagtactatctatccgatgtgggactaaatccaccccctcaaagccaaca 3976275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 130 - 200
Target Start/End: Original strand, 3977056 - 3977126
Alignment:
Q  130 tttataaagtcttatcaagagttctatctctccgatgtgggactaaattcactccctgaaagccaacacaa 200  Q
    |||||||| |||| |||||||| |||||| |||||||||||||||||| ||| |||| | |||||||||||    
T  3977056 tttataaactcttctcaagagtactatctatccgatgtgggactaaatccaccccctcagagccaacacaa 3977126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 130 - 200
Target Start/End: Original strand, 6183419 - 6183489
Alignment:
Q  130 tttataaagtcttatcaagagttctatctctccgatgtgggactaaattcactccctgaaagccaacacaa 200  Q
    |||||||| |||| |||||||| |||||| |||||||||||| ||||| ||| |||| |||||||||||||    
T  6183419 tttataaactcttctcaagagtactatctatccgatgtgggattaaatccaccccctcaaagccaacacaa 6183489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 130 - 200
Target Start/End: Original strand, 18901917 - 18901987
Alignment:
Q  130 tttataaagtcttatcaagagttctatctctccgatgtgggactaaattcactccctgaaagccaacacaa 200  Q
    |||||||| |||| ||||||||  ||||| |||||||||||||||||| ||| |||| |||||||||||||    
T  18901917 tttataaactcttttcaagagtcttatctatccgatgtgggactaaatccaccccctcaaagccaacacaa 18901987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 130 - 200
Target Start/End: Original strand, 21213938 - 21214008
Alignment:
Q  130 tttataaagtcttatcaagagttctatctctccgatgtgggactaaattcactccctgaaagccaacacaa 200  Q
    |||||||| |||| |||||||| |||||| ||| |||||||||||||| ||| |||| |||||||||||||    
T  21213938 tttataaactcttctcaagagtactatctatccaatgtgggactaaatccaccccctcaaagccaacacaa 21214008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 139 - 200
Target Start/End: Original strand, 15820163 - 15820224
Alignment:
Q  139 tcttatcaagagttctatctctccgatgtgggactaaattcactccctgaaagccaacacaa 200  Q
    |||| |||||||| |||||| |||||||||||||||||| ||| |||| |||||||||||||    
T  15820163 tcttctcaagagtgctatctatccgatgtgggactaaatccaccccctcaaagccaacacaa 15820224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 130 - 199
Target Start/End: Complemental strand, 23054377 - 23054308
Alignment:
Q  130 tttataaagtcttatcaagagttctatctctccgatgtgggactaaattcactccctgaaagccaacaca 199  Q
    |||||||| |||| ||||||||| ||||| || ||||||||||||||| ||| |||| ||||||||||||    
T  23054377 tttataaactcttctcaagagttatatctatctgatgtgggactaaatccaccccctcaaagccaacaca 23054308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 130 - 200
Target Start/End: Original strand, 42768387 - 42768455
Alignment:
Q  130 tttataaagtcttatcaagagttctatctctccgatgtgggactaaattcactccctgaaagccaacacaa 200  Q
    |||||||| |||| |||||||||  |||| ||||||||||||||||||||||  ||| |||||||||||||    
T  42768387 tttataaactcttctcaagagtt--atctatccgatgtgggactaaattcacctcctcaaagccaacacaa 42768455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 130 - 200
Target Start/End: Original strand, 3976524 - 3976594
Alignment:
Q  130 tttataaagtcttatcaagagttctatctctccgatgtgggactaaattcactccctgaaagccaacacaa 200  Q
    |||||||| |||| |||||| |  ||||| |||||||||||||||||| ||| |||| |||||||||||||    
T  3976524 tttataaactcttctcaagaatattatctatccgatgtgggactaaatccaccccctcaaagccaacacaa 3976594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 130 - 200
Target Start/End: Complemental strand, 7877895 - 7877825
Alignment:
Q  130 tttataaagtcttatcaagagttctatctctccgatgtgggactaaattcactccctgaaagccaacacaa 200  Q
    |||||||| |||| || ||||| |||||| |||||||| ||||||||| ||| |||| |||||||||||||    
T  7877895 tttataaactcttctcgagagtgctatctatccgatgtaggactaaatccaccccctcaaagccaacacaa 7877825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 130 - 200
Target Start/End: Original strand, 21214254 - 21214324
Alignment:
Q  130 tttataaagtcttatcaagagttctatctctccgatgtgggactaaattcactccctgaaagccaacacaa 200  Q
    |||||||| |||| |||||||| |||||| ||  |||||||||||||| ||| |||| |||||||||||||    
T  21214254 tttataaactcttctcaagagtgctatctatctaatgtgggactaaatccaccccctcaaagccaacacaa 21214324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 130 - 200
Target Start/End: Complemental strand, 43195835 - 43195765
Alignment:
Q  130 tttataaagtcttatcaagagttctatctctccgatgtgggactaaattcactccctgaaagccaacacaa 200  Q
    |||||||| |||| |||||||| |||||| || |||||||||||||||  || |||| |||||||||||||    
T  43195835 tttataaactcttctcaagagtactatctatctgatgtgggactaaatctaccccctcaaagccaacacaa 43195765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 264
Target Start/End: Complemental strand, 25441631 - 25441587
Alignment:
Q  220 ttaggcgactagggatggaccgcaataaaggtggaatatccaaca 264  Q
    ||||||||||||||  ||||||||||||||||||||| |||||||    
T  25441631 ttaggcgactaggggcggaccgcaataaaggtggaatttccaaca 25441587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 130 - 200
Target Start/End: Complemental strand, 17509160 - 17509090
Alignment:
Q  130 tttataaagtcttatcaagagttctatctctccgatgtgggactaaattcactccctgaaagccaacacaa 200  Q
    |||||||| |||| ||||| || |||||| || |||||||| |||||| ||| |||| |||||||||||||    
T  17509160 tttataaactcttctcaagggtgctatctatctgatgtggggctaaatccaccccctcaaagccaacacaa 17509090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 130 - 200
Target Start/End: Complemental strand, 25441747 - 25441677
Alignment:
Q  130 tttataaagtcttatcaagagttctatctctccgatgtgggactaaattcactccctgaaagccaacacaa 200  Q
    |||||||| |||| |||||||| |||||| || ||||||||||||||| ||  ||||  ||||||||||||    
T  25441747 tttataaactcttctcaagagtactatctatctgatgtgggactaaatccaaccccttgaagccaacacaa 25441677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 130 - 176
Target Start/End: Original strand, 39596759 - 39596805
Alignment:
Q  130 tttataaagtcttatcaagagttctatctctccgatgtgggactaaa 176  Q
    |||||||| |||||||||||||||||| |  ||||||||||||||||    
T  39596759 tttataaactcttatcaagagttctatatagccgatgtgggactaaa 39596805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 130 - 207
Target Start/End: Original strand, 35249747 - 35249823
Alignment:
Q  130 tttataaagtcttatcaagagttctatctctccgatgtgggactaaattcactccctgaaagccaacacaaagcaact 207  Q
    |||||||| ||||||||||||| ||||||  |||||||| || ||| ||||| |||| |||||||||| || ||||||    
T  35249747 tttataaactcttatcaagagtcctatctaaccgatgtgagattaagttcac-ccctcaaagccaacagaaggcaact 35249823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 220 - 264
Target Start/End: Original strand, 5424925 - 5424969
Alignment:
Q  220 ttaggcgactagggatggaccgcaataaaggtggaatatccaaca 264  Q
    ||||||||||||||| |||| ||||| |||||||||| |||||||    
T  5424925 ttaggcgactagggaaggacagcaattaaggtggaatttccaaca 5424969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 130 - 186
Target Start/End: Complemental strand, 11969103 - 11969047
Alignment:
Q  130 tttataaagtcttatcaagagttctatctctccgatgtgggactaaattcactccct 186  Q
    |||||||| |||| |||||||| |||||| ||||| |||||||||||| ||| ||||    
T  11969103 tttataaactcttctcaagagtactatctatccgacgtgggactaaatccaccccct 11969047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 130 - 200
Target Start/End: Original strand, 4022178 - 4022248
Alignment:
Q  130 tttataaagtcttatcaagagttctatctctccgatgtgggactaaattcactccctgaaagccaacacaa 200  Q
    |||||||| |||| |||||||| |||||| |||||||||||||||||| ||| |||| |||||||||||||    
T  4022178 tttataaactcttctcaagagtcctatctatccgatgtgggactaaatccaccccctcaaagccaacacaa 4022248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 130 - 200
Target Start/End: Original strand, 8520146 - 8520216
Alignment:
Q  130 tttataaagtcttatcaagagttctatctctccgatgtgggactaaattcactccctgaaagccaacacaa 200  Q
    |||||||| |||| |||||||| |||||| |||||||||||||||||| ||| |||| |||||||||||||    
T  8520146 tttataaactcttctcaagagtgctatctatccgatgtgggactaaatccaccccctcaaagccaacacaa 8520216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 130 - 200
Target Start/End: Complemental strand, 17419838 - 17419768
Alignment:
Q  130 tttataaagtcttatcaagagttctatctctccgatgtgggactaaattcactccctgaaagccaacacaa 200  Q
    |||||||| |||| |||||||| |||||| |||||||||||||||||| ||| |||| |||||||||||||    
T  17419838 tttataaactcttctcaagagtgctatctatccgatgtgggactaaatccaccccctcaaagccaacacaa 17419768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 128 - 200
Target Start/End: Complemental strand, 45264716 - 45264644
Alignment:
Q  128 cttttataaagtcttatcaagagttctatctctccgatgtgggactaaattcactccctgaaagccaacacaa 200  Q
    |||||||||| ||||||||||||| |||||| | ||| |||||||||||| ||| |||| |||||||||||||    
T  45264716 cttttataaactcttatcaagagtcctatctattcgacgtgggactaaatccaccccctcaaagccaacacaa 45264644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 130 - 200
Target Start/End: Original strand, 19937096 - 19937166
Alignment:
Q  130 tttataaagtcttatcaagagttctatctctccgatgtgggactaaattcactccctgaaagccaacacaa 200  Q
    |||||||| |||| |||||| |||||||| |||||||||||||||||| ||| || | |||||||||||||    
T  19937096 tttataaactcttctcaagaattctatctatccgatgtgggactaaatccaccccatcaaagccaacacaa 19937166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 130 - 200
Target Start/End: Complemental strand, 31305762 - 31305692
Alignment:
Q  130 tttataaagtcttatcaagagttctatctctccgatgtgggactaaattcactccctgaaagccaacacaa 200  Q
    |||||||| |||| |||||||| |||||| || ||||||||||||||| ||| |||| |||||||||||||    
T  31305762 tttataaactcttctcaagagtgctatctatcggatgtgggactaaatccaccccctcaaagccaacacaa 31305692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 130 - 219
Target Start/End: Original strand, 19696751 - 19696839
Alignment:
Q  130 tttataaagtcttatcaagagttctatctctccgatgtgggactaaattcactccctgaaagccaacacaaagcaactcaaatgtcgcaa 219  Q
    |||||||| ||||||||||||| |||||| || ||||||| |||||||| || |||| ||||||||||| |  ||||||||||| |||||    
T  19696751 tttataaactcttatcaagagtcctatctgtctgatgtggaactaaatttac-ccctcaaagccaacacgagacaactcaaatgccgcaa 19696839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 130 - 206
Target Start/End: Complemental strand, 35892072 - 35891996
Alignment:
Q  130 tttataaagtcttatcaagagttctatctctccgatgtgggactaaattcactccctgaaagccaacacaaagcaac 206  Q
    |||||||| |||||||||||||| |||||   | |||| ||||||||||||| |||| ||||||||||||| |||||    
T  35892072 tttataaactcttatcaagagttttatctaatcaatgtaggactaaattcaccccctcaaagccaacacaaggcaac 35891996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 130 - 193
Target Start/End: Original strand, 2697384 - 2697447
Alignment:
Q  130 tttataaagtcttatcaagagttctatctctccgatgtgggactaaattcactccctgaaagcc 193  Q
    |||||||| |||| |||||||| |||||| |||||||||||||||||| ||| |||| ||||||    
T  2697384 tttataaactcttctcaagagtcctatctatccgatgtgggactaaatccaccccctcaaagcc 2697447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 130 - 200
Target Start/End: Complemental strand, 20735573 - 20735503
Alignment:
Q  130 tttataaagtcttatcaagagttctatctctccgatgtgggactaaattcactccctgaaagccaacacaa 200  Q
    |||||||| |||| |||||||| |||||| || ||||||||| ||||| ||| |||| |||||||||||||    
T  20735573 tttataaattcttctcaagagtactatctatctgatgtgggattaaatccaccccctcaaagccaacacaa 20735503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 130 - 200
Target Start/End: Complemental strand, 43423330 - 43423260
Alignment:
Q  130 tttataaagtcttatcaagagttctatctctccgatgtgggactaaattcactccctgaaagccaacacaa 200  Q
    |||||||| |||| ||||||||  ||||| |||||||||||| ||||| ||| |||| |||||||||||||    
T  43423330 tttataaactcttctcaagagtgttatctatccgatgtgggaataaatccaccccctcaaagccaacacaa 43423260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 130 - 200
Target Start/End: Original strand, 33879831 - 33879901
Alignment:
Q  130 tttataaagtcttatcaagagttctatctctccgatgtgggactaaattcactccctgaaagccaacacaa 200  Q
    |||||||| |||| |||||||| |||| | || ||||||||||||||| ||| | || |||||||||||||    
T  33879831 tttataaactcttctcaagagtgctatatatctgatgtgggactaaatccaccctctcaaagccaacacaa 33879901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 130 - 200
Target Start/End: Complemental strand, 33964424 - 33964354
Alignment:
Q  130 tttataaagtcttatcaagagttctatctctccgatgtgggactaaattcactccctgaaagccaacacaa 200  Q
    |||||||| |||| |||||||| |||| | || ||||||||||||||| ||| | || |||||||||||||    
T  33964424 tttataaactcttctcaagagtgctatatatctgatgtgggactaaatccaccctctcaaagccaacacaa 33964354  T

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Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 208 - 264
Target Start/End: Complemental strand, 31305659 - 31305602
Alignment:
Q  208 caaatgtcgcaatt-aggcgactagggatggaccgcaataaaggtggaatatccaaca 264  Q
    |||| ||||||||| |||||||||||| ||||||||||| |||| ||||| |||||||    
T  31305659 caaaggtcgcaatttaggcgactaggggtggaccgcaattaaggcggaatttccaaca 31305602  T

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Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 130 - 191
Target Start/End: Complemental strand, 40664261 - 40664200
Alignment:
Q  130 tttataaagtcttatcaagagttctatctctccgatgtgggactaaattcactccctgaaag 191  Q
    |||||||| ||||||||||||| ||||||  |||||||| |||||||| ||| |||| ||||    
T  40664261 tttataaactcttatcaagagtcctatctaaccgatgtgagactaaatccaccccctcaaag 40664200  T

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Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 220 - 264
Target Start/End: Original strand, 2697500 - 2697544
Alignment:
Q  220 ttaggcgactagggatggaccgcaataaaggtggaatatccaaca 264  Q
    ||||||||||| || |||||||||||||||| ||||| |||||||    
T  2697500 ttaggcgactaagggtggaccgcaataaaggcggaatttccaaca 2697544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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