View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9653_high_15 (Length: 300)
Name: NF9653_high_15
Description: NF9653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9653_high_15 |
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Alignment Details
Target: chr2 (Bit Score: 252; Significance: 1e-140; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 6 - 285
Target Start/End: Original strand, 32721775 - 32722054
Alignment:
| Q |
6 |
gaacgagcagaacctgtgtaatgctaaacaccaatccttttacatctatagacagtttcttccagcaacattaataagagtaacatgacaaaaatcgcag |
105 |
Q |
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|||| |||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
32721775 |
gaacaagcacaacatgtgtaatgctaaacaccaatccttttacatctatagacagtttcttccagcaacattaataagagtgacatgacaaaaatcgcag |
32721874 |
T |
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| Q |
106 |
caatagtaaaaatgatgtgtcacaactatgcttaatggtgccatttgtgggtcagatagaaaagcagcatatctgcactccactaacacaagccagcaat |
205 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
32721875 |
caatagtaaaaatgatgtgtcacaactatgcttaacggtgccatttgtgggtcagatagaaaagcagcatatctgcactccactaacacaagtcagcaat |
32721974 |
T |
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| Q |
206 |
acaattcctgcacctaagagacactgaaagagttaaggagattcaggttcaaatcctgtaaactaagataactactaatt |
285 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32721975 |
acaattcctgcacctaagagacactgaaagaggtaaggagattcaggttcaaatcctgtaaactaagataactactaatt |
32722054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 6 - 285
Target Start/End: Original strand, 32730230 - 32730509
Alignment:
| Q |
6 |
gaacgagcagaacctgtgtaatgctaaacaccaatccttttacatctatagacagtttcttccagcaacattaataagagtaacatgacaaaaatcgcag |
105 |
Q |
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|||| |||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
32730230 |
gaacaagcacaacatgtgtaatgctaaacaccaatccttttacatctatagacagtttcttccagcaacattaataagagtgacatgacaaaaatcgcag |
32730329 |
T |
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| Q |
106 |
caatagtaaaaatgatgtgtcacaactatgcttaatggtgccatttgtgggtcagatagaaaagcagcatatctgcactccactaacacaagccagcaat |
205 |
Q |
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| T |
32730330 |
caatagtaaaaatgatgtgtcacaactatgcttaacggtgccatttgtgggtcagatagaaaagcagcatatctgcactccactaacacaagtcagcaat |
32730429 |
T |
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| Q |
206 |
acaattcctgcacctaagagacactgaaagagttaaggagattcaggttcaaatcctgtaaactaagataactactaatt |
285 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32730430 |
acaattcctgcacctaagagacactgaaagaggtaaggagattcaggttcaaatcctgtaaactaagataactactaatt |
32730509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 20 - 284
Target Start/End: Original strand, 32747127 - 32747392
Alignment:
| Q |
20 |
tgtgtaatgctaaacaccaatccttttacatctatagacagtttcttccagcaacattaataagagtaacatgacaaaaatcgcagcaatagtaaaa-at |
118 |
Q |
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||||||||||||||||||| ||||||||||||||||| |||||||||||| ||||||||||||||| || |||||||||||||||||||||||||| || |
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| T |
32747127 |
tgtgtaatgctaaacaccattccttttacatctataggcagtttcttccaacaacattaataagagcgacgtgacaaaaatcgcagcaatagtaaaaaat |
32747226 |
T |
|
| Q |
119 |
gatgtgtcacaactatgcttaatggtgccatttgtgggtcagatagaaaagcagcatatctgcactccactaacacaagccagcaatacaattcctgcac |
218 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
32747227 |
gatgtgtcacaactatgcttaacggtgccatttgtgggtcagatagaaaagcagcatatctgcactccactaacacaagtcagcaatacaattcctgcac |
32747326 |
T |
|
| Q |
219 |
ctaagagacactgaaagagttaaggagattcaggttcaaatcctgtaaactaagataactactaat |
284 |
Q |
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| T |
32747327 |
ctaagagacactgaaagaggtaaggagattcaggttcaaatcctataaactaagataactactaat |
32747392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 10 - 171
Target Start/End: Original strand, 32711234 - 32711395
Alignment:
| Q |
10 |
gagcagaacctgtgtaatgctaaacaccaatccttttacatctatagacagtttcttccagcaacattaataagagtaacatgacaaaaatcgcagcaat |
109 |
Q |
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||||| ||| ||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
32711234 |
gagcaaaacatgtgtaatgctaaacaccattccttttacatctataggcagtttcttccagcaacattaataagagtgacatgacaaaaatcgcagcaat |
32711333 |
T |
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| Q |
110 |
agtaaaaatgatgtgtcacaactatgcttaatggtgccatttgtgggtcagatagaaaagca |
171 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32711334 |
agtaaaaatgatgtgtcacaactatgcttaatggtgccatttgtgggtcagatagaaaagca |
32711395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 123 - 216
Target Start/End: Complemental strand, 3286205 - 3286104
Alignment:
| Q |
123 |
tgtcacaactatgcttaatggtgccatttgtgggtcagatagaaaagcagcatatc--------tgcactccactaacacaagccagcaatacaattcct |
214 |
Q |
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||||| ||||||||||||||||||||||||||| || |||||||||| ||| || | || |||||||||||||||||||||||||||||||| |
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| T |
3286205 |
tgtcataactatgcttaatggtgccatttgtggatctgatagaaaagtagcgtaacttgagagttgtgctccactaacacaagccagcaatacaattcct |
3286106 |
T |
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| Q |
215 |
gc |
216 |
Q |
| |
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|| |
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| T |
3286105 |
gc |
3286104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 68
Target Start/End: Complemental strand, 3282118 - 3282069
Alignment:
| Q |
19 |
ctgtgtaatgctaaacaccaatccttttacatctatagacagtttcttcc |
68 |
Q |
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|||||| ||||||||||||| ||||||||||||||||| |||| |||||| |
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| T |
3282118 |
ctgtgtgatgctaaacaccattccttttacatctataggcagtctcttcc |
3282069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 130 - 176
Target Start/End: Complemental strand, 3282003 - 3281957
Alignment:
| Q |
130 |
actatgcttaatggtgccatttgtgggtcagatagaaaagcagcata |
176 |
Q |
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||||||||||| |||||||||| |||||||| |||||||| |||||| |
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| T |
3282003 |
actatgcttaacggtgccatttctgggtcagttagaaaagtagcata |
3281957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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