View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9653_high_24 (Length: 239)
Name: NF9653_high_24
Description: NF9653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9653_high_24 |
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Alignment Details
Target: chr2 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 14 - 220
Target Start/End: Complemental strand, 1239542 - 1239336
Alignment:
| Q |
14 |
gcagagagcatgaattaatatatatggtggagttattgaagaggtggaaatggagaagttacaaatagagtaattaagttaatatctcactgagtttcat |
113 |
Q |
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| T |
1239542 |
gcagagagcatgaattaatatatatggtggagttattgaagaggtggaaatggagaagttacaaatagagtaatcaagttaatatctcactgagtttcat |
1239443 |
T |
|
| Q |
114 |
gcatagcagcatgcagtagaggcaaacccttattattgaggcccacgaagaccaatttcgcacgtgtcaaataagaagctaaaacgtgtaagtttttcta |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1239442 |
gcatagcagcatgcagtagaggcaaacccttattattgaggcccacgaagaccaatttcgcacgtgtcaaataagaagctaaaacgtgtaagtttttcta |
1239343 |
T |
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| Q |
214 |
tagtaac |
220 |
Q |
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||||||| |
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| T |
1239342 |
tagtaac |
1239336 |
T |
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