View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9653_high_26 (Length: 236)
Name: NF9653_high_26
Description: NF9653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9653_high_26 |
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Alignment Details
Target: chr2 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 14457851 - 14458073
Alignment:
| Q |
1 |
tgcatggtgaatcttacattcacctcctcttcttgctcgtctcctcttcatacttatcgacaacagcttccaatgctctctttgttggttttggaggtct |
100 |
Q |
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| T |
14457851 |
tgcatggtgaatcttacattcgcctcctcttcttgctcgtatcctcttcatacttatcgacaacagcttccaatgctctctttgttggttttgaaggtct |
14457950 |
T |
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| Q |
101 |
tctactcttcctcggagtttctacagcttgattcccgatgtgaccctctgatgttggaactgtaacagcattaggctcatcaaatttgacctcatcagga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| |
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| T |
14457951 |
tctactcttcctcggagtttctacagcttgattcccgatgtgaccctctgatgttggaactgtaacagcattagagtcatcaaatttgacctcagcagga |
14458050 |
T |
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| Q |
201 |
acttcattcaccatagtttcatc |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
14458051 |
acttcattcaccatagtttcatc |
14458073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 14466725 - 14466943
Alignment:
| Q |
1 |
tgcatggtgaatcttacattcacctcctcttcttgctcgtctcctcttcatacttatcgacaacagcttccaatgctctctttgttggttttggaggtct |
100 |
Q |
| |
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|||| |||||||||||||| | ||||||||| ||||| || |||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
14466725 |
tgcacggtgaatcttacat-cgcctcctcttgttgcttgtttcctcttcgtacttgtcgacaacagcttccaatgctctctttgttggttttggcggtct |
14466823 |
T |
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| Q |
101 |
tctactcttcctcggagtttctacagcttgattcccgatgtgaccctctgatgttggaactgtaacagcattaggctcatcaaatttgacctcatcagga |
200 |
Q |
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|| ||||||||||||||||||||||||||||||||||||| | |||||||||||||| ||||| |||||||||||| ||||||||||||| ||||| |
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| T |
14466824 |
tccgctcttcctcggagtttctacagcttgattcccgatgtaatcctctgatgttgga---gtaactacattaggctcattaaatttgacctcagcagga |
14466920 |
T |
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| Q |
201 |
acttcattcaccatagtttcatc |
223 |
Q |
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||||| ||||||||||||||||| |
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| T |
14466921 |
acttcgttcaccatagtttcatc |
14466943 |
T |
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