View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9653_high_4 (Length: 466)
Name: NF9653_high_4
Description: NF9653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9653_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 367; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 19 - 449
Target Start/End: Complemental strand, 52609486 - 52609062
Alignment:
| Q |
19 |
tggagcacaagcccaacaaaaataactgcctgaagttaatcgtcgatgttagagcactagaatctttaagtcttcgcctcaaagaacaagacaatgactt |
118 |
Q |
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| T |
52609486 |
tggagcacaagcccaacaaaaataaccgcctgaagttaatcgtcgatgttagagcactagaatctttaagtcttcgcctcaaagaacaagacaatgactt |
52609387 |
T |
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| Q |
119 |
gtgggctaaggtaaaatgaggtgcggaaatgcagtcgtggatctcttatatatgtaaagagccgtgaaacactaaataaggctctcagaggcaatagtgt |
218 |
Q |
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| T |
52609386 |
gggggctagggtaaaatgaggcgcgaaaatgcagtcgtggatctcttatatatgtaaagagccgtgaaacactaaataaggctctcagaggcaatagtgt |
52609287 |
T |
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| Q |
219 |
gcagccgtctaaaagcccgtactaatgcaacgaacgaactgaaaattaatctaaaaatagaataaaccactgcaaaatcatgtgcacattctcatttcga |
318 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
52609286 |
gcagccgtctaaaagcacgtactaatgcaacgaacgaactgaa----aatctaaaaatagaataatccactgcaaaatcatgtgcacattctcatttcga |
52609191 |
T |
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| Q |
319 |
gaaaagccttaaaataccttgagatatcattgactttgagtattggaatgtctttgttggtacatcccccacacccatgaagaaccgctgtcgtcaacaa |
418 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
52609190 |
gaaaagccttaaaacaccttgagatatcattgactttgagtattggaatgtctttgttggtacat--cccacacccatgaagaaccgctgtcgtcaacaa |
52609093 |
T |
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| Q |
419 |
ccacatcaacttcctagcatccacttcggcc |
449 |
Q |
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| T |
52609092 |
ccacatcaacttcctagcacccacttcggcc |
52609062 |
T |
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