View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9653_low_11 (Length: 452)
Name: NF9653_low_11
Description: NF9653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9653_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 240; Significance: 1e-133; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 16 - 263
Target Start/End: Complemental strand, 3016843 - 3016596
Alignment:
| Q |
16 |
gagcacagacacttcaaattgaacgtgtatcttgtgtacaacaacagacaagtatcaatgtcggatactgacattttagattgaaaaacgtgtcgcttgt |
115 |
Q |
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| T |
3016843 |
gagcacagacacttcaaattgaacgtgtatcttgtgtacaacaacagacaagtatcaatgtcggatactgacattttagattgaaaaacgtgtcgcttgt |
3016744 |
T |
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| Q |
116 |
ccaacaaccgacaagtatccatgtctgacaccgacacattgatttcattggactactttagctttatcaaattattactagtgttgacgtatcaatgtca |
215 |
Q |
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| T |
3016743 |
ccaacaaccgacaagtatccatgtctgacaccgacacattgatttcattggactactttagctttatcaaattattactagtgttgacgtatcagtgtca |
3016644 |
T |
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| Q |
216 |
gtgatgtgtctgtatccatgtcagtgcttcattgatgaccgtgtccca |
263 |
Q |
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| T |
3016643 |
gtgatgtgtctgtatccatgtcagtgcttcatagatgaccgtgtccca |
3016596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 302 - 452
Target Start/End: Complemental strand, 3016557 - 3016407
Alignment:
| Q |
302 |
acatgaggatgtttatggtttcatgttgcagttattcttcattcttgtgttggnnnnnnngctctgaagttaacagcatcgtcgtgtgaactgattgaag |
401 |
Q |
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| T |
3016557 |
acatgaggatgtttatggtttcatgttgcagttattcttcattcttgtgttggaaaaaaagctctgaagttaacagcatcgtcgtgtgaactgattgaag |
3016458 |
T |
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| Q |
402 |
caaagatgggttttgaaccattgattttgtattgcaagccagaaccaaaca |
452 |
Q |
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| T |
3016457 |
caaagatgggttttgaaccattgatttggtattgcaagccagaaccaaaca |
3016407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 385 - 452
Target Start/End: Complemental strand, 3044892 - 3044825
Alignment:
| Q |
385 |
gtgtgaactgattgaagcaaagatgggttttgaaccattgattttgtattgcaagccagaaccaaaca |
452 |
Q |
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| T |
3044892 |
gtgttaaccgattgaagcaaagatgggttttgaaccattggtttggtactgcaagccagaaccaaaca |
3044825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 177 - 218
Target Start/End: Complemental strand, 19941743 - 19941702
Alignment:
| Q |
177 |
ctttatcaaattattactagtgttgacgtatcaatgtcagtg |
218 |
Q |
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| T |
19941743 |
ctttctcaaattattactagtgttgatgtatcaatgtcagtg |
19941702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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