View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9653_low_14 (Length: 439)
Name: NF9653_low_14
Description: NF9653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9653_low_14 |
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| [»] scaffold1248 (1 HSPs) |
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| [»] scaffold0952 (1 HSPs) |
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| [»] scaffold0717 (1 HSPs) |
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| [»] scaffold1719 (2 HSPs) |
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Alignment Details
Target: scaffold1248 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: scaffold1248
Description:
Target: scaffold1248; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 22 - 433
Target Start/End: Complemental strand, 2312 - 1900
Alignment:
| Q |
22 |
tttggttgaggaagtgttgcattcagctattgaaaaacaattgaacattgaaggttactcatatttcaaacttctgacagatttgctatgtttgagttgc |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
2312 |
tttggttgaggaagtgttgcattcagctattgaaaaacaattgaacattgaaggttactcatatatcaaacttctgacagatttgctatgtttgagttgc |
2213 |
T |
|
| Q |
122 |
atagatatgctagacatttcagtctgccactctttctattaaaatctaaaacagtctttgtatgttgcaatcatgtagtaagttgtaagtgtgggcacct |
221 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2212 |
atagatatgctagacatttcagtctgccactctttctattaaaatctaaaacagtctttgcatgttgcaatcatgtagtaagttgtaagtgtgggcacct |
2113 |
T |
|
| Q |
222 |
aaagcattcacctcttggctcccccaatgcatgtccacctgagtaattccttttagtctctttcaaagcatagataacggctcaacatagatttttggtt |
321 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2112 |
aaagcattcacctcttggctcccccaatgcatgtccacctgagtaattccttttagtctctttcaaagcatagataacggctcaacatagatttttggtt |
2013 |
T |
|
| Q |
322 |
tccttgtagattttgggttaataaaacaagcttaaatctactag-nnnnnnnggacatcgaaaaatatttacaaagttattgtgccaaaaataacgcacc |
420 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||| | |||||||||||||||||||||||||||||||||||||||||| |
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| T |
2012 |
tccttgtagattttgggttaataaaacaagcttaaatctactagaaaaaaaaggagaccgaaaaatatttacaaagttattgtgccaaaaataacgcacc |
1913 |
T |
|
| Q |
421 |
actcaacaccaaa |
433 |
Q |
| |
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||||||||||||| |
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| T |
1912 |
actcaacaccaaa |
1900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0952 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: scaffold0952
Description:
Target: scaffold0952; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 22 - 433
Target Start/End: Original strand, 1 - 413
Alignment:
| Q |
22 |
tttggttgaggaagtgttgcattcagctattgaaaaacaattgaacattgaaggttactcatatttcaaacttctgacagatttgctatgtttgagttgc |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
1 |
tttggttgaggaagtgttgcattcagctattgaaaaacaattgaacattgaaggttactcatatatcaaacttctgacagatttgctatgtttgagttgc |
100 |
T |
|
| Q |
122 |
atagatatgctagacatttcagtctgccactctttctattaaaatctaaaacagtctttgtatgttgcaatcatgtagtaagttgtaagtgtgggcacct |
221 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
101 |
atagatatgctagacatttcagtctgccactctttctattaaaatctaaaacagtctttgcatgttgcaatcatgtagtaagttgtaagtgtgggcacct |
200 |
T |
|
| Q |
222 |
aaagcattcacctcttggctcccccaatgcatgtccacctgagtaattccttttagtctctttcaaagcatagataacggctcaacatagatttttggtt |
321 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
201 |
aaagcattcacctcttggctcccccaatgcatgtccacctgagtaattccttttagtctctttcaaagcatagataacggctcaacatagatttttggtt |
300 |
T |
|
| Q |
322 |
tccttgtagattttgggttaataaaacaagcttaaatctactag-nnnnnnnggacatcgaaaaatatttacaaagttattgtgccaaaaataacgcacc |
420 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||| | |||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
301 |
tccttgtagattttgggttaataaaacaagcttaaatctactagaaaaaaaaggagaccgaaaaatatttacaaagttattgtgccaaaaataacgcacc |
400 |
T |
|
| Q |
421 |
actcaacaccaaa |
433 |
Q |
| |
|
||||||||||||| |
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|
| T |
401 |
actcaacaccaaa |
413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0717 (Bit Score: 174; Significance: 2e-93; HSPs: 1)
Name: scaffold0717
Description:
Target: scaffold0717; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 1 - 276
Target Start/End: Complemental strand, 4555 - 4301
Alignment:
| Q |
1 |
ctgaatataaaataggacaggtttggttgaggaagtgttgcattcagctattgaaaaacaattgaacattgaaggttactcatatttcaaacttctgaca |
100 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
4555 |
ctgaatattaaataggacaggtttggttgaggaagtgttgcattcagctattgaaaaacaattgaacattgaaggttactcatatatcaaacttctgaca |
4456 |
T |
|
| Q |
101 |
gatttgctatgtttgagttgcatagatatgctagacatttcagtctgccactctttctattaaaatctaaaacagtctttgtatgttgcaatcatgtagt |
200 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||| |||| ||| |||||||||| |||||||||||||||||| |
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| T |
4455 |
gatttgctatgtttga-------------------catttcagtctgccactctttctatttaaatttaagacagtctttgcatgttgcaatcatgtagt |
4375 |
T |
|
| Q |
201 |
aagttgtaagtgtgggcacctaaagcattcacctcttggctcccccaatgcatgtccacctgagtaattcctttta |
276 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
4374 |
aagttgtaagtgtgggcacc-aaagcattcacctcttggct-ccccaatgcatgtccacctgagtaattcctttta |
4301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 108; Significance: 4e-54; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 20579832 - 20579717
Alignment:
| Q |
1 |
ctgaatataaaataggacaggtttggttgaggaagtgttgcattcagctattgaaaaacaattgaacattgaaggttactcatatttcaaacttctgaca |
100 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
20579832 |
ctgaatattaaataggacaggtttggttgaggaagtgttgcattcagctattgaaaaacaattgaacattgaaggttactcatatatcaaacttctgaca |
20579733 |
T |
|
| Q |
101 |
gatttgctatgtttga |
116 |
Q |
| |
|
|||||||||||||||| |
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|
| T |
20579732 |
gatttgctatgtttga |
20579717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 227 - 355
Target Start/End: Complemental strand, 20537122 - 20536994
Alignment:
| Q |
227 |
attcacctcttggctcccccaatgcatgtccacctgagtaattccttttagtctctttcaaagcatagataacggctcaacatagatttttggtttcctt |
326 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| ||| ||||||||||||||| |
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|
| T |
20537122 |
attcacctcttggcccccccaatgcatgtccaactgagtaattccttttagtctctttcaaagcatagataacggatcaagatatatttttggtttcctt |
20537023 |
T |
|
| Q |
327 |
gtagattttgggttaataaaacaagctta |
355 |
Q |
| |
|
| ||||||||||||||||||||||||||| |
|
|
| T |
20537022 |
gaagattttgggttaataaaacaagctta |
20536994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 62 - 165
Target Start/End: Complemental strand, 20600597 - 20600496
Alignment:
| Q |
62 |
ttgaacattgaaggttactcatatttcaaacttctgacagatttgctatgtttgagttgcatagatatgctagacatttcagtctgccactctttctatt |
161 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||| ||| |||||||| ||||||||||||||||||||||| |||||||||||||||| |||||| |
|
|
| T |
20600597 |
ttgaacattcaaggttactcatatttcaaacttctgacatatt-gctatgtt-gagttgcatagatatgctagacacttcagtctgccactctctctatt |
20600500 |
T |
|
| Q |
162 |
aaaa |
165 |
Q |
| |
|
|||| |
|
|
| T |
20600499 |
aaaa |
20600496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 224 - 271
Target Start/End: Complemental strand, 20600357 - 20600311
Alignment:
| Q |
224 |
agcattcacctcttggctcccccaatgcatgtccacctgagtaattcc |
271 |
Q |
| |
|
|||||||| ||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
20600357 |
agcattcatctcttggctcccc-aatgcatgtccacctgagtaattcc |
20600311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 223 - 298
Target Start/End: Original strand, 26077406 - 26077479
Alignment:
| Q |
223 |
aagcattcacctcttggctcccccaatgcatgtccacctgagtaattccttttagtctctttcaaagcatagataa |
298 |
Q |
| |
|
||||||||||| ||||||||||| ||||||||| |||||||||||||||||||||||| ||||||||||| ||||| |
|
|
| T |
26077406 |
aagcattcacc-cttggctcccc-aatgcatgttcacctgagtaattccttttagtctttttcaaagcattgataa |
26077479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 82 - 131
Target Start/End: Original strand, 26076984 - 26077031
Alignment:
| Q |
82 |
atatttcaaacttctgacagatttgctatgtttgagttgcatagatatgc |
131 |
Q |
| |
|
||||||||||||||||||||| |||||||| || |||||||||||||||| |
|
|
| T |
26076984 |
atatttcaaacttctgacaga-ttgctatg-ttaagttgcatagatatgc |
26077031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1719 (Bit Score: 44; Significance: 7e-16; HSPs: 2)
Name: scaffold1719
Description:
Target: scaffold1719; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 62 - 121
Target Start/End: Complemental strand, 340 - 282
Alignment:
| Q |
62 |
ttgaacattgaaggttactcatatttcaaacttctgacagatttgctatgtttgagttgc |
121 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| | ||||||||||| |||||| |
|
|
| T |
340 |
ttgaacattgaaggttactcatatttcaaacttctgacata-ttgctatgtttaagttgc |
282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1719; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 224 - 271
Target Start/End: Complemental strand, 159 - 113
Alignment:
| Q |
224 |
agcattcacctcttggctcccccaatgcatgtccacctgagtaattcc |
271 |
Q |
| |
|
|||||||| ||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
159 |
agcattcatctcttggctcccc-aatgcatgtccacctgagtaattcc |
113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 62 - 165
Target Start/End: Complemental strand, 54406360 - 54406255
Alignment:
| Q |
62 |
ttgaacattgaaggttactcatatttcaaac-ttctgacagatttgctatgtttgagttgcatagatatgctagaca---tttcagtctgccactctttc |
157 |
Q |
| |
|
|||||||||||||||| |||||||||||||| |||||||| | ||| |||| ||| |||||||||||||||| |||| ||| |||||||||||| || |
|
|
| T |
54406360 |
ttgaacattgaaggttgctcatatttcaaactttctgacata-ttggtatg-ttgtgttgcatagatatgctggacacttcttctgtctgccactctctc |
54406263 |
T |
|
| Q |
158 |
tattaaaa |
165 |
Q |
| |
|
||||||| |
|
|
| T |
54406262 |
cattaaaa |
54406255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 303 - 355
Target Start/End: Complemental strand, 40091508 - 40091456
Alignment:
| Q |
303 |
tcaacatagatttttggtttccttgtagattttgggttaataaaacaagctta |
355 |
Q |
| |
|
|||| |||||||||| |||| ||| |||||||| ||||||||||||||||||| |
|
|
| T |
40091508 |
tcaagatagatttttagttttcttatagatttttggttaataaaacaagctta |
40091456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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