View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9653_low_16 (Length: 434)

Name: NF9653_low_16
Description: NF9653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9653_low_16
NF9653_low_16
[»] chr4 (21 HSPs)
chr4 (1-421)||(2391196-2391616)
chr4 (1-210)||(2381568-2381777)
chr4 (18-397)||(2382695-2383070)
chr4 (3-209)||(2380306-2380512)
chr4 (243-397)||(2380558-2380714)
chr4 (61-193)||(2533992-2534124)
chr4 (285-396)||(2381814-2381927)
chr4 (60-123)||(2621399-2621462)
chr4 (70-193)||(2547223-2547346)
chr4 (2-123)||(2525504-2525625)
chr4 (84-193)||(2367923-2368032)
chr4 (83-123)||(12124594-12124634)
chr4 (78-123)||(2361217-2361262)
chr4 (78-115)||(2486064-2486101)
chr4 (68-123)||(2467294-2467349)
chr4 (83-124)||(2373488-2373529)
chr4 (1-30)||(2376410-2376439)
chr4 (154-195)||(12124522-12124563)
chr4 (60-115)||(2393829-2393885)
chr4 (153-193)||(2625588-2625628)
chr4 (83-115)||(12126658-12126690)
[»] chr5 (1 HSPs)
chr5 (71-128)||(41900496-41900553)


Alignment Details
Target: chr4 (Bit Score: 372; Significance: 0; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 1 - 421
Target Start/End: Original strand, 2391196 - 2391616
Alignment:
Q  1 cccaaatctccactttccctttagacctcagatcgctcattctttccaacttctacaaaattcctaaagatgggttccgagctttgtccaaaaagatgaa 100  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  2391196 cccaaatctccactttccctttagtcctcagatcgctcattctttccaacttctacaaaatccctaaagatgggttccgagctttgtccaaaaagatgaa 2391295  T
Q  101 aaatttgacctctcttacttgtttcgaannnnnnnggatcaacaagaaggatatcttcttcattgttgattgcttccctttacttgaagaacttgttctc 200  Q
    ||||||||||||||||||||||| ||||       ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  2391296 aaatttgacctctcttacttgttccgaatttttttggatcaacaagaaggatatcttcttcattgttgattgcttccctttactcgaagaacttgttctc 2391395  T
Q  201 aaggaaacagactgcactgattacacttctgctaggaagttcgattttgtgctagatgaagataatcattttttggcacttcccaaactccgaaagatta 300  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  2391396 aaggaaacagactgcagtgattacacttctgctaggaagttcgattttgtgctagatgaagataataattttttggcacttcccaaactccgaaagatta 2391495  T
Q  301 gtttgtatggttatgacatcgatagccaatttattgattatctccacagcaaccctcgacctttcagaggagaagaataacctagatggtgatgatatac 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2391496 gtttgtatggttatgacatcgatagccaatttattgattatctccacagcaaccctcgacctttcagaggagaagaataacctagatggtgatgatatac 2391595  T
Q  401 tccatagtgataattcacagg 421  Q
    |||||||||||||||| ||||    
T  2391596 tccatagtgataattcccagg 2391616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 2381568 - 2381777
Alignment:
Q  1 cccaaatctccactttccctttagacctcagatcgctcattctttccaacttctacaaaattcctaaagatgggttccgagctttgtccaaaaagatgaa 100  Q
    ||||||||||| |||||||||||||||||| |||||||||| | ||||| || |  ||||| ||||||||||||||||||||||||||||||||||||||    
T  2381568 cccaaatctccgctttccctttagacctcaaatcgctcattttctccaagttttttaaaatccctaaagatgggttccgagctttgtccaaaaagatgaa 2381667  T
Q  101 aaatttgacctctcttacttgtttcgaannnnnnnggatcaacaagaaggatatcttcttcattgttgattgcttccctttacttgaagaacttgttctc 200  Q
    |||||||||||||||||||||||  |||       ||||||||||||||||| |||| |||||||| ||||||||||||||||| |||||||| ||||||    
T  2381668 aaatttgacctctcttacttgttctgaaattacttggatcaacaagaaggatttcttattcattgtcgattgcttccctttactcgaagaactcgttctc 2381767  T
Q  201 aaggaaacag 210  Q
    ||| ||||||    
T  2381768 aagaaaacag 2381777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 18 - 397
Target Start/End: Original strand, 2382695 - 2383070
Alignment:
Q  18 cctttagacctcagatcgctcattctttccaacttctacaaaattcctaaagatgggttccgagctttgtccaaaaagatgaaaaatttgacctctctta 117  Q
    |||||||| |||| ||| |||||||| |||||| ||| |||||| | || | |||| || |||||||||||||||||||||||||| ||||| ||| | |    
T  2382695 cctttagatctcaaatcactcattctctccaacctcttcaaaatccatataaatggattgcgagctttgtccaaaaagatgaaaaaattgacttctttca 2382794  T
Q  118 cttgtttcgaannnnnnnggatcaacaagaaggatatcttcttcattgttgattgcttccctttacttgaagaacttgttctcaaggaaacagactgcac 217  Q
     ||||||| ||         || |   ||||||||||||  |||||||   |||||||||||||||| || | ||| |||||||||||||||   |||      
T  2382795 tttgtttcaaa---------attacgtagaaggatatctatttcattgccaattgcttccctttactcgatgtactcgttctcaaggaaacatgatgcgt 2382885  T
Q  218 tgat---tacacttctgctaggaagttcgattttgtgctagatgaagataatcattttttggcacttcccaaactccgaaagattagtttgtatggttat 314  Q
     | |   ||| ||||| || |||| ||  |||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| |||||||||| ||    
T  2382886 aggtcagtacccttctacttggaacttttattttgtgctagatgatgataatcaatttttggcacttcccaaactccgaaagattaatttgtatggtaat 2382985  T
Q  315 gacatcgatagccaatttattgattatctccacagcaaccctcgaccttt--cagaggagaagaataacctagatggtgatgata 397  Q
      ||||||||||||| ||||| ||||||| | ||  |||| | |||||||  ||||||||||||||||| |||||||| ||||||    
T  2382986 tccatcgatagccaaattattaattatcttcgcaaaaaccgtggacctttcacagaggagaagaataacttagatggtaatgata 2383070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 3 - 209
Target Start/End: Original strand, 2380306 - 2380512
Alignment:
Q  3 caaatctccactttccctttagacctcagatcgctcattctttccaacttctacaaaattcctaaagatgggttccgagctttgtccaaaaagatgaaaa 102  Q
    ||||||||| |||| |||||||| |||| |||||||||||| |||||| ||| |||||| || ||| |||| || ||| |||||||||||||||||||||    
T  2380306 caaatctccgctttacctttagatctcaaatcgctcattctctccaacctcttcaaaatcccgaaaaatggattgcgacctttgtccaaaaagatgaaaa 2380405  T
Q  103 atttgacctctcttacttgtttcgaannnnnnnggatcaacaagaaggatatcttcttcattgttgattgcttccctttacttgaagaacttgttctcaa 202  Q
    ||||||| ||| | |  |||||| ||       ||||||| ||||||||||| | |||||||| |||||||||||||| |||||||| ||| ||||||||    
T  2380406 atttgacttctttcatgtgtttcaaaattacttggatcaataagaaggatatttacttcattgctgattgcttcccttcacttgaagtactcgttctcaa 2380505  T
Q  203 ggaaaca 209  Q
    |||||||    
T  2380506 ggaaaca 2380512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 243 - 397
Target Start/End: Original strand, 2380558 - 2380714
Alignment:
Q  243 gattttgtgctagatgaagataatcattttttggcacttcccaaactccgaaagattagtttgtatggttatgacatcgatagccaatttattgattatc 342  Q
    ||||||| ||||||||| |||||| | ||||| |||||||| ||||||||||||||||||||||||||| |   ||||||||||||| ||||| ||||||    
T  2380558 gattttgagctagatgatgataataaatttttagcacttccaaaactccgaaagattagtttgtatggtaactccatcgatagccaaattattaattatc 2380657  T
Q  343 tccacagcaaccctcgacctttca--gaggagaagaataacctagatggtgatgata 397  Q
    ||| ||  |||| | |||||||||  ||||||||||||||| |||||||| ||||||    
T  2380658 tccgcaaaaaccgtggacctttcacggaggagaagaataacttagatggtaatgata 2380714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 61 - 193
Target Start/End: Complemental strand, 2534124 - 2533992
Alignment:
Q  61 ttcctaaagatgggttccgagctttgtccaaaaagatgaaaaatttgacctctcttacttgtttcgaannnnnnnggatcaacaagaaggatatcttctt 160  Q
    ||||| || ||| |||||||||||||||||| |||||||||||||| || ||||| |||||||   ||         ||||||||||| ||| |||||||    
T  2534124 ttcctgaaaatgagttccgagctttgtccaagaagatgaaaaatttaacatctctcacttgttatcaaatgagctatatcaacaagaatgatctcttctt 2534025  T
Q  161 cattgttgattgcttccctttacttgaagaact 193  Q
     |||| |||||| ||||||||||||||||||||    
T  2534024 gattgctgattgtttccctttacttgaagaact 2533992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 285 - 396
Target Start/End: Original strand, 2381814 - 2381927
Alignment:
Q  285 aaactccgaaagattagtttgtatggttatgacatcgatagccaatttattgattatctccacagcaaccctcgaccttt--cagaggagaagaataacc 382  Q
    |||||||||||||||||||||  ||||  | |||| ||| ||||||||||| ||||||||| || ||||| | |||||||  ||||| |||||||||||     
T  2381814 aaactccgaaagattagtttgcgtggtatttacattgatcgccaatttattaattatctccgcaacaaccgtggacctttcacagagtagaagaataact 2381913  T
Q  383 tagatggtgatgat 396  Q
    |||||||| |||||    
T  2381914 tagatggtaatgat 2381927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 60 - 123
Target Start/End: Original strand, 2621399 - 2621462
Alignment:
Q  60 attcctaaagatgggttccgagctttgtccaaaaagatgaaaaatttgacctctcttacttgtt 123  Q
    ||||||| ||||||||| |||||||| |||||||| |||||||||||||| ||||| |||||||    
T  2621399 attcctacagatgggttgcgagctttctccaaaaatatgaaaaatttgacatctctcacttgtt 2621462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 70 - 193
Target Start/End: Complemental strand, 2547346 - 2547223
Alignment:
Q  70 atgggttccgagctttgtccaaaaagatgaaaaatttgacctctcttacttgtttcgaannnnnnnggatcaacaagaaggatatcttcttcattgttga 169  Q
    ||||||| |||||||||||  ||||||||||||||||||| ||||| | ||||| | ||         |||| |||||| ||| | |||||||||| |||    
T  2547346 atgggttgcgagctttgtctgaaaagatgaaaaatttgacgtctctcatttgttccaaaatcacctttatcagcaagaatgatttattcttcattgctga 2547247  T
Q  170 ttgcttccctttacttgaagaact 193  Q
    ||| ||||||||||||||||||||    
T  2547246 ttgtttccctttacttgaagaact 2547223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 2 - 123
Target Start/End: Complemental strand, 2525625 - 2525504
Alignment:
Q  2 ccaaatctccactttccctttagacctcagatcgctcattctttccaacttctacaaaattcctaaagatgggttccgagctttgtccaaaaagatgaaa 101  Q
    ||||||||||||||||||||||||||||| |||||||| ||| | | ||  |  |||  ||||| || ||| ||| || | ||||||||| || ||||||    
T  2525625 ccaaatctccactttccctttagacctcaaatcgctcactctctaccacccccccaaggttcctcaaaatgagttgcgtgttttgtccaagaaaatgaaa 2525526  T
Q  102 aatttgacctctcttacttgtt 123  Q
    |||||||| ||||| |||||||    
T  2525525 aatttgacatctctcacttgtt 2525504  T

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Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 84 - 193
Target Start/End: Original strand, 2367923 - 2368032
Alignment:
Q  84 ttgtccaaaaagatgaaaaatttgacctctcttacttgtttcgaannnnnnnggatcaacaagaaggatatcttcttcattgttgattgcttccctttac 183  Q
    |||||||||| ||||||||| ||||||||||||||||||| || |       | ||  ||||||  ||| |||||||||||| |||||| ||||||||||    
T  2367923 ttgtccaaaaggatgaaaaacttgacctctcttacttgttccggaatgattagtattcacaagagtgatctcttcttcattgctgattgtttccctttac 2368022  T
Q  184 ttgaagaact 193  Q
    | ||||||||    
T  2368023 tcgaagaact 2368032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 83 - 123
Target Start/End: Complemental strand, 12124634 - 12124594
Alignment:
Q  83 tttgtccaaaaagatgaaaaatttgacctctcttacttgtt 123  Q
    ||||||||||||||||||||||||||||||||| |||||||    
T  12124634 tttgtccaaaaagatgaaaaatttgacctctctcacttgtt 12124594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 78 - 123
Target Start/End: Original strand, 2361217 - 2361262
Alignment:
Q  78 cgagctttgtccaaaaagatgaaaaatttgacctctcttacttgtt 123  Q
    ||||||||||||||||| |||||||||||||| ||||| |||||||    
T  2361217 cgagctttgtccaaaaaaatgaaaaatttgacatctctcacttgtt 2361262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 78 - 115
Target Start/End: Complemental strand, 2486101 - 2486064
Alignment:
Q  78 cgagctttgtccaaaaagatgaaaaatttgacctctct 115  Q
    |||||||||||||||||||||||||||||||| |||||    
T  2486101 cgagctttgtccaaaaagatgaaaaatttgacatctct 2486064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 68 - 123
Target Start/End: Complemental strand, 2467349 - 2467294
Alignment:
Q  68 agatgggttccgagctttgtccaaaaagatgaaaaatttgacctctcttacttgtt 123  Q
    ||||||||| |||||||| |||||| |||||||||||||||| || || |||||||    
T  2467349 agatgggttgcgagctttctccaaagagatgaaaaatttgacatcactcacttgtt 2467294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 83 - 124
Target Start/End: Original strand, 2373488 - 2373529
Alignment:
Q  83 tttgtccaaaaagatgaaaaatttgacctctcttacttgttt 124  Q
    ||||||| ||||||||||| ||||||||||||| ||||||||    
T  2373488 tttgtccgaaaagatgaaatatttgacctctctcacttgttt 2373529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 2376410 - 2376439
Alignment:
Q  1 cccaaatctccactttccctttagacctca 30  Q
    ||||||||||||||||||||||||||||||    
T  2376410 cccaaatctccactttccctttagacctca 2376439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 154 - 195
Target Start/End: Complemental strand, 12124563 - 12124522
Alignment:
Q  154 tcttcttcattgttgattgcttccctttacttgaagaacttg 195  Q
    |||||||||||| |||||| ||||||||||| ||||||||||    
T  12124563 tcttcttcattgctgattgtttccctttactagaagaacttg 12124522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 60 - 115
Target Start/End: Original strand, 2393829 - 2393885
Alignment:
Q  60 attcctaaagatgggttccgagctttgtccaaaaagatg-aaaaatttgacctctct 115  Q
    |||| |||| ||||||| |||||||||||| |||||||| ||||||||||| |||||    
T  2393829 attcataaaaatgggttgcgagctttgtcccaaaagatgaaaaaatttgacatctct 2393885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 153 - 193
Target Start/End: Original strand, 2625588 - 2625628
Alignment:
Q  153 atcttcttcattgttgattgcttccctttacttgaagaact 193  Q
    |||||||| ||||||||||| ||||||||||| ||||||||    
T  2625588 atcttctttattgttgattgtttccctttactcgaagaact 2625628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 83 - 115
Target Start/End: Complemental strand, 12126690 - 12126658
Alignment:
Q  83 tttgtccaaaaagatgaaaaatttgacctctct 115  Q
    |||||||||| ||||||||||||||||||||||    
T  12126690 tttgtccaaacagatgaaaaatttgacctctct 12126658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 71 - 128
Target Start/End: Original strand, 41900496 - 41900553
Alignment:
Q  71 tgggttccgagctttgtccaaaaagatgaaaaatttgacctctcttacttgtttcgaa 128  Q
    |||||| |||||||| ||||||||||| | || |||||||||||| ||||||| ||||    
T  41900496 tgggtttcgagctttttccaaaaagattacaactttgacctctctcacttgttacgaa 41900553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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