View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9653_low_17 (Length: 433)
Name: NF9653_low_17
Description: NF9653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9653_low_17 |
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Alignment Details
Target: chr6 (Bit Score: 277; Significance: 1e-155; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 50 - 423
Target Start/End: Original strand, 635843 - 636213
Alignment:
| Q |
50 |
aaacagcatatgccaactgattagaacaacatcctaaattgtttaagttgacattttgatcatgaagtgaccaatagactacaataaccaattagaacat |
149 |
Q |
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| T |
635843 |
aaacagcctatgccaactgattagaacaacatcctaaattgtttaagttgacattttgatcatgaagtgaccaatagactacaataaccaattagaacat |
635942 |
T |
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| Q |
150 |
gcttctttcaatttttctatgaagcacatgttgcctcttcctttattgtcatcaatatgtaatagagatcagtcaaatttcgtgaagttcag--nnnnnn |
247 |
Q |
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| T |
635943 |
gcttctttcaatttttctatgaagcacatgttgcctcttcctttactgtcatcaatatgtaatagagatcagtcaaatttcgtgaagttcagaaaaaacg |
636042 |
T |
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| Q |
248 |
nnnnnnnnnnctgcataattacttttttgtctcaatcttcctactaggatgttaaattagtagtgttgcagcatccttgaaaaatcttgcctttggatgt |
347 |
Q |
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| T |
636043 |
aaaaaaaaaactgcataattacttttttgtctctatcttcctactaggatgttaaattagtagtgttgcagcatccttgaaaaatcttgcctttggatgt |
636142 |
T |
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| Q |
348 |
ggagcaagtgaagtaatttaatgagttgtacaatgctggtgtgagttaaaacttgagaacctaaagatgtgatgat |
423 |
Q |
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| T |
636143 |
ggagcaagtgaagtactttaatgag-----caatgctggtgtgagttaaaacttgagaagctaaagatgtgatgat |
636213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 18 - 56
Target Start/End: Original strand, 635782 - 635820
Alignment:
| Q |
18 |
cctagcccaaagaaaagggcgctgacagcaacaaacagc |
56 |
Q |
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| T |
635782 |
cctagcccaaagaaaagggcgctgacagcaacaaacagc |
635820 |
T |
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