View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9653_low_18 (Length: 433)
Name: NF9653_low_18
Description: NF9653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9653_low_18 |
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Alignment Details
Target: chr8 (Bit Score: 415; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 1 - 423
Target Start/End: Complemental strand, 36290658 - 36290236
Alignment:
| Q |
1 |
tcactgatgaaaaagatgtttctgatgcaataaacatagctactgaggaaattgctggttctgccaaagggatttccaacactcctttgacattgattgt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36290658 |
tcactgatgaaaaagatgtttctgatgcaataaacatagctactgaggaaattgctggttctgccaaagggatttccaacactcctttgacattgattgt |
36290559 |
T |
|
| Q |
101 |
caagaagaacggtgttcctgatcttaccatggttgatcttccaggtatcacacgtgtacctgttcatggtcaacctgataatatctatgatcagattaaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36290558 |
caagaagaacggtgttcctgatcttaccatggttgatcttccaggtatcacacgtgtacctgttcatggtcaacctgataatatctatgatcagattaaa |
36290459 |
T |
|
| Q |
201 |
gatattattatggagtatataactcctgaagaaagtattatcttgaatgtcctttctgctactgttgattttacaacttgtgagtctattaggatgtcac |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36290458 |
gatattattatggagtatataactcctgaagaaagtattatctcgaatgtcctttctgctactgttgattttacaacttgtgagtctattaggatgtcac |
36290359 |
T |
|
| Q |
301 |
aaatggttgataaaactggtttgaggacacttgctgttgtcacaaaagccgataaatctcctgaaggattgttggagaaggttactgctgatgatgttaa |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
36290358 |
aaatggttgataaaactggtttgaggacacttgctgttgtcacaaaagccgataaatctcctgaaggattgttggagaaggttaccgctgatgatgttaa |
36290259 |
T |
|
| Q |
401 |
catcggtctaggttatgtctgtg |
423 |
Q |
| |
|
||||||||||||||||||||||| |
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| T |
36290258 |
catcggtctaggttatgtctgtg |
36290236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 3 - 403
Target Start/End: Complemental strand, 36313139 - 36312739
Alignment:
| Q |
3 |
actgatgaaaaagatgtttctgatgcaataaacatagctactgaggaaattgctggttctgccaaagggatttccaacactcctttgacattgattgtca |
102 |
Q |
| |
|
||||||||| | |||| |||||||| ||||||| ||||||||| || ||||||| |||||||||||||||| |||||||| |||| |||||||| | |
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| T |
36313139 |
actgatgaagcaaatgtctctgatgctataaacacagctactgaagagcttgctggaactgccaaagggatttcaaacactccactgactttgattgtga |
36313040 |
T |
|
| Q |
103 |
agaagaacggtgttcctgatcttaccatggttgatcttccaggtatcacacgtgtacctgttcatggtcaacctgataatatctatgatcagattaaaga |
202 |
Q |
| |
|
||||||| || |||||||| ||||| |||||||||||||||||||| || ||||| ||||||||||||||||||||||| || |||||||||||||| || |
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| T |
36313039 |
agaagaatggcgttcctgaccttacaatggttgatcttccaggtataactcgtgttcctgttcatggtcaacctgataacatttatgatcagattaagga |
36312940 |
T |
|
| Q |
203 |
tattattatggagtatataactcctgaagaaagtattatcttgaatgtcctttctgctactgttgattttacaacttgtgagtctattaggatgtcacaa |
302 |
Q |
| |
|
|||||| ||||| ||||||||||||||||| || |||||| ||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
36312939 |
tattatcatggactatataactcctgaagagagcattatcctgaatgttctttctgctactgttgattttagtacttgtgagtctattaggatgtcacag |
36312840 |
T |
|
| Q |
303 |
atggttgataaaactggtttgaggacacttgctgttgtcacaaaagccgataaatctcctgaaggattgttggagaaggttactgctgatgatgttaaca |
402 |
Q |
| |
|
||||||||||||||||||||||||||| | |||||||| ||||| || |||||||| |||||||| ||||||||||| || ||||||||||||||||||| |
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|
| T |
36312839 |
atggttgataaaactggtttgaggacattagctgttgtaacaaaggctgataaatcacctgaaggtttgttggagaaagtaactgctgatgatgttaaca |
36312740 |
T |
|
| Q |
403 |
t |
403 |
Q |
| |
|
| |
|
|
| T |
36312739 |
t |
36312739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 75; Significance: 2e-34; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 228 - 398
Target Start/End: Complemental strand, 33579845 - 33579675
Alignment:
| Q |
228 |
gaagaaagtattatcttgaatgtcctttctgctactgttgattttacaacttgtgagtctattaggatgtcacaaatggttgataaaactggtttgagga |
327 |
Q |
| |
|
|||||||| |||||||||||||| |||||||||||| ||||||| | ||||||||||| | ||||||||| ||| ||||||||||||||||||||| |
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| T |
33579845 |
gaagaaagcattatcttgaatgttctttctgctactattgatttctctacttgtgagtcattaaggatgtcagaaactgttgataaaactggtttgaggt |
33579746 |
T |
|
| Q |
328 |
cacttgctgttgtcacaaaagccgataaatctcctgaaggattgttggagaaggttactgctgatgatgtt |
398 |
Q |
| |
|
||||||||| | |||| || ||||||||| |||||||||||| ||||| |||||||||||||||||| |
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| T |
33579745 |
cacttgctgctacttcaaaggctcataaatctcttgaaggattgtttgagaaagttactgctgatgatgtt |
33579675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 161 - 244
Target Start/End: Complemental strand, 33579949 - 33579866
Alignment:
| Q |
161 |
tgttcatggtcaacctgataatatctatgatcagattaaagatattattatggagtatataactcctgaagaaagtattatctt |
244 |
Q |
| |
|
||||||| ||||| |||||||| |||||||| ||| |||||||||||||||||| |||| || |||||||| |||||||| |
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|
| T |
33579949 |
tgttcattttcaacatgataatagttatgatcaaattgaagatattattatggagtttatacctatggaagaaagcattatctt |
33579866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 71; Significance: 5e-32; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 228 - 398
Target Start/End: Original strand, 15997153 - 15997323
Alignment:
| Q |
228 |
gaagaaagtattatcttgaatgtcctttctgctactgttgattttacaacttgtgagtctattaggatgtcacaaatggttgataaaactggtttgagga |
327 |
Q |
| |
|
|||||||| |||||||||||||| |||||||||||| ||||||| | ||||||||||| | ||||||||| ||| ||||||||||||| ||||||| |
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| T |
15997153 |
gaagaaagcattatcttgaatgttctttctgctactattgatttctctacttgtgagtcattaaggatgtcagaaactgttgataaaactgatttgaggt |
15997252 |
T |
|
| Q |
328 |
cacttgctgttgtcacaaaagccgataaatctcctgaaggattgttggagaaggttactgctgatgatgtt |
398 |
Q |
| |
|
||||||||| | |||| || ||||||||| |||||||||||| ||||| |||||||||||||||||| |
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|
| T |
15997253 |
cacttgctgctacttcaaaggctcataaatctcttgaaggattgtttgagaaagttactgctgatgatgtt |
15997323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 161 - 222
Target Start/End: Original strand, 15997057 - 15997118
Alignment:
| Q |
161 |
tgttcatggtcaacctgataatatctatgatcagattaaagatattattatggagtatataa |
222 |
Q |
| |
|
||||||| ||||| |||||||| |||||||| ||| |||||||||||||||||| ||||| |
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|
| T |
15997057 |
tgttcattttcaacatgataatagttatgatcaaattgaagatattattatggagtttataa |
15997118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 362 - 398
Target Start/End: Original strand, 30575787 - 30575823
Alignment:
| Q |
362 |
tgaaggattgttggagaaggttactgctgatgatgtt |
398 |
Q |
| |
|
|||||||||||| ||||| |||||||||||||||||| |
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|
| T |
30575787 |
tgaaggattgtttgagaaagttactgctgatgatgtt |
30575823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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