View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9653_low_19 (Length: 419)

Name: NF9653_low_19
Description: NF9653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9653_low_19
NF9653_low_19
[»] chr7 (5 HSPs)
chr7 (18-409)||(42133060-42133451)
chr7 (147-404)||(42154012-42154269)
chr7 (138-404)||(42171858-42172124)
chr7 (147-404)||(42142209-42142466)
chr7 (232-313)||(39622216-39622297)
[»] chr8 (4 HSPs)
chr8 (176-330)||(45156073-45156226)
chr8 (235-401)||(4501189-4501355)
chr8 (205-405)||(43529329-43529529)
chr8 (54-102)||(45156272-45156320)
[»] chr1 (4 HSPs)
chr1 (200-404)||(41687689-41687893)
chr1 (201-319)||(2149001-2149119)
chr1 (205-405)||(19542561-19542761)
chr1 (241-365)||(2160938-2161062)
[»] chr4 (1 HSPs)
chr4 (274-404)||(2886962-2887092)
[»] chr2 (1 HSPs)
chr2 (241-318)||(43457685-43457762)


Alignment Details
Target: chr7 (Bit Score: 380; Significance: 0; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 18 - 409
Target Start/End: Complemental strand, 42133451 - 42133060
Alignment:
Q  18 ctaaaatatatcaataagaaggtggactatacttcgaatgaaaacaacatttaatattttgtgtcatggaactttagtaatagttggtttgtttattcgt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42133451 ctaaaatatatcaataagaaggtggactatacttcgaatgaaaacaacatttaatattttgtgtcatggaactttagtaatagttggtttgtttattcgt 42133352  T
Q  118 caaagtaatgtattttattgtttataatgtcaggaaatgaagagtcggggaatcaatgaagatagacttaaactactacacaatgttagtggtgctttca 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||  ||||||||||||||||||    
T  42133351 caaagtaatgtattttattgtttataatgtcaggaaatgaagagtcagggaatcaatgaagatagacttaaactactacatgatgttagtggtgctttca 42133252  T
Q  218 gaccaggaatattaacagcacttatgggtgtcagtggtgctggaaagacaaccctcatggatgtattagccggaagaaaaacaggtggatatattgaagg 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42133251 gaccaggaatattaacagcacttatgggtgtcagtggtgctggaaagacaaccctcatggatgtattagccggaagaaaaacaggtggatatattgaagg 42133152  T
Q  318 aagtattaacatctctggttacccaaagaaccaaacaacatttgctcgagtcagtggttattgtgagcaaaatgatattcattctccctatg 409  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42133151 aagtattaacatctctggttacccaaagaaccaaacaacatttgctcgagtcagtggttattgtgagcaaaatgatattcattctccctatg 42133060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 147 - 404
Target Start/End: Complemental strand, 42154269 - 42154012
Alignment:
Q  147 tcaggaaatgaagagtcggggaatcaatgaagatagacttaaactactacacaatgttagtggtgctttcagaccaggaatattaacagcacttatgggt 246  Q
    |||||||||||| ||||  ||||||| | | ||||  ||| ||||||||||  |||||||||||||||| ||||| |||||||||||||||||| | |||    
T  42154269 tcaggaaatgaaaagtcaaggaatcattaaggataagcttcaactactacaagatgttagtggtgcttttagaccgggaatattaacagcacttgtaggt 42154170  T
Q  247 gtcagtggtgctggaaagacaaccctcatggatgtattagccggaagaaaaacaggtggatatattgaaggaagtattaacatctctggttacccaaaga 346  Q
    || ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| ||| ||||| || ||||||| |||||    
T  42154169 gttagtggtgctggaaagacaaccctcatggatgtattagccggcagaaaaacaggtggatacattgaaggaaatatcaacatatccggttaccgaaaga 42154070  T
Q  347 accaaacaacatttgctcgagtcagtggttattgtgagcaaaatgatattcattctcc 404  Q
    ||||| ||||||| |||||| | || ||||| || || || ||||| |||||||||||    
T  42154069 accaagcaacattcgctcgaataagcggttactgcgaacagaatgacattcattctcc 42154012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 138 - 404
Target Start/End: Complemental strand, 42172124 - 42171858
Alignment:
Q  138 tttataatgtcaggaaatgaagagtcggggaatcaatgaagatagacttaaactactacacaatgttagtggtgctttcagaccaggaatattaacagca 237  Q
    ||||| || |||||||||||||||||  ||||| ||  | || | |||| ||||||||||  |||||||||||||||| |||||||||||||||||||||    
T  42172124 tttatcatatcaggaaatgaagagtcatggaatgaacaaggaaaaacttcaactactacaagatgttagtggtgcttttagaccaggaatattaacagca 42172025  T
Q  238 cttatgggtgtcagtggtgctggaaagacaaccctcatggatgtattagccggaagaaaaacaggtggatatattgaaggaagtattaacatctctggtt 337  Q
    ||| | ||||| ||||||||||| |||||||| ||||||||||||||||| ||||||||||| |||||||| |||||||||| ||||| ||| || ||||    
T  42172024 cttgtaggtgttagtggtgctgggaagacaacactcatggatgtattagctggaagaaaaactggtggatacattgaaggaaatattagcatatcaggtt 42171925  T
Q  338 acccaaagaaccaaacaacatttgctcgagtcagtggttattgtgagcaaaatgatattcattctcc 404  Q
    ||| ||||||||||  |||||| || ||| | |||||||| || || || |||||||||||||||||    
T  42171924 accaaaagaaccaagaaacattcgcccgaattagtggttactgcgaacagaatgatattcattctcc 42171858  T

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Target: chr7; HSP #4
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 147 - 404
Target Start/End: Complemental strand, 42142466 - 42142209
Alignment:
Q  147 tcaggaaatgaagagtcggggaatcaatgaagatagacttaaactactacacaatgttagtggtgctttcagaccaggaatattaacagcacttatgggt 246  Q
    |||||||||||||||||| ||||| | | | |||| |||| || |||||||  ||||||||||| |||| |||||||||||||||||||||||| | |||    
T  42142466 tcaggaaatgaagagtcgaggaataattaaggataaacttcaattactacaagatgttagtggttcttttagaccaggaatattaacagcacttgtaggt 42142367  T
Q  247 gtcagtggtgctggaaagacaaccctcatggatgtattagccggaagaaaaacaggtggatatattgaaggaagtattaacatctctggttacccaaaga 346  Q
    || ||||||||||||||||||||||| |||||||||||||| |||||||| ||||||||||| || ||||||| ||| | ||| ||||||||||||||||    
T  42142366 gttagtggtgctggaaagacaaccctaatggatgtattagctggaagaaagacaggtggatacatcgaaggaaatatcagcatatctggttacccaaaga 42142267  T
Q  347 accaaacaacatttgctcgagtcagtggttattgtgagcaaaatgatattcattctcc 404  Q
    |||||  |||||| |||||| | || ||||| || || || ||||| |||||||||||    
T  42142266 accaagaaacattcgctcgaataagcggttactgcgaacagaatgacattcattctcc 42142209  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 313
Target Start/End: Complemental strand, 39622297 - 39622216
Alignment:
Q  232 acagcacttatgggtgtcagtggtgctggaaagacaaccctcatggatgtattagccggaagaaaaacaggtggatatattg 313  Q
    ||||| || |||||||| | ||||||||| || ||||| || ||||||||| |||| |||||||||||  | ||||||||||    
T  39622297 acagctctgatgggtgtgactggtgctggcaaaacaactctgatggatgtactagctggaagaaaaaccagaggatatattg 39622216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 93; Significance: 4e-45; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 176 - 330
Target Start/End: Complemental strand, 45156226 - 45156073
Alignment:
Q  176 aagatagacttaaactactacacaatgttagtggtgctttcagaccaggaatattaacagcacttatgggtgtcagtggtgctggaaagacaaccctcat 275  Q
    ||||||||||| |||||| ||| |||||||| ||||||||||||||||||||||||||| |||||||||||||||  |||||||||||||||||||||||    
T  45156226 aagatagacttcaactaccacataatgttagcggtgctttcagaccaggaatattaacaacacttatgggtgtca--ggtgctggaaagacaaccctcat 45156129  T
Q  276 ggatgtattagccggaagaaaaacaggtggatatattgaag-gaagtattaacatc 330  Q
    ||||||||||||  |  |||||||||||||||| |||||||  |||||||||||||    
T  45156128 ggatgtattagcttgtcgaaaaacaggtggatacattgaagcaaagtattaacatc 45156073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 235 - 401
Target Start/End: Original strand, 4501189 - 4501355
Alignment:
Q  235 gcacttatgggtgtcagtggtgctggaaagacaaccctcatggatgtattagccggaagaaaaacaggtggatatattgaaggaagtattaacatctctg 334  Q
    ||||| ||||| || |||||||| || ||||||||  | |||||||| ||||| |||||||| || ||||| || |||||||||  | |||  |||||||    
T  4501189 gcactaatgggagttagtggtgccgggaagacaactttaatggatgttttagcaggaagaaagactggtggctacattgaaggagatgttagaatctctg 4501288  T
Q  335 gttacccaaagaaccaaacaacatttgctcgagtcagtggttattgtgagcaaaatgatattcattc 401  Q
    | ||||| |||||||||  ||| |||||  ||||   |||||||||||| |||| ||||||||||||    
T  4501289 gataccctaagaaccaagaaacctttgcaagagtttctggttattgtgaacaaactgatattcattc 4501355  T

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Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 205 - 405
Target Start/End: Original strand, 43529329 - 43529529
Alignment:
Q  205 agtggtgctttcagaccaggaatattaacagcacttatgggtgtcagtggtgctggaaagacaaccctcatggatgtattagccggaagaaaaacaggtg 304  Q
    ||||||||||| || || ||||| ||||||||| |  | ||||| |||||||||||||| || ||  | ||||||||  |  | ||||| |||||  | |    
T  43529329 agtggtgcttttaggcctggaattttaacagcattagttggtgtaagtggtgctggaaaaaccactttgatggatgtgctttcaggaaggaaaactagcg 43529428  T
Q  305 gatatattgaaggaagtattaacatctctggttacccaaagaaccaaacaacatttgctcgagtcagtggttattgtgagcaaaatgatattcattctcc 404  Q
    | ||  ||||||||||||||| ||| || ||||| || ||||||||| |||| ||||||||  | || ||||||||||| ||||||||||| || |||||    
T  43529429 gttaccttgaaggaagtattagcatatcaggttatcctaagaaccaagcaacttttgctcggattagcggttattgtgaacaaaatgatatccactctcc 43529528  T
Q  405 c 405  Q
    |    
T  43529529 c 43529529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 54 - 102
Target Start/End: Complemental strand, 45156320 - 45156272
Alignment:
Q  54 aatgaaaacaacatttaatattttgtgtcatggaactttagtaatagtt 102  Q
    ||||||||||||||||||| |||| |||||||||||||||||| |||||    
T  45156320 aatgaaaacaacatttaattttttttgtcatggaactttagtactagtt 45156272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 57; Significance: 1e-23; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 200 - 404
Target Start/End: Complemental strand, 41687893 - 41687689
Alignment:
Q  200 atgttagtggtgctttcagaccaggaatattaacagcacttatgggtgtcagtggtgctggaaagacaaccctcatggatgtattagccggaagaaaaac 299  Q
    |||| |||||||||||||| || ||| || |||| ||| |  | ||||| | |||||||||||| || || || ||||||||  | || |||||||||||    
T  41687893 atgtaagtggtgctttcaggcctggagtactaacggcattagttggtgtaactggtgctggaaaaaccacactaatggatgttcttgctggaagaaaaac 41687794  T
Q  300 aggtggatatattgaaggaagtattaacatctctggttacccaaagaaccaaacaacatttgctcgagtcagtggttattgtgagcaaaatgatattcat 399  Q
     ||||| ||||||||||| || |||| | | |||||||| |||||||||||| |||| ||||| ||| ||||||| || ||||| ||||| ||||||||     
T  41687793 tggtggttatattgaagggagcattagcgtatctggttatccaaagaaccaagcaacttttgcacgaatcagtggatactgtgaacaaaacgatattcac 41687694  T
Q  400 tctcc 404  Q
    |||||    
T  41687693 tctcc 41687689  T

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Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 201 - 319
Target Start/End: Complemental strand, 2149119 - 2149001
Alignment:
Q  201 tgttagtggtgctttcagaccaggaatattaacagcacttatgggtgtcagtggtgctggaaagacaaccctcatggatgtattagccggaagaaaaaca 300  Q
    ||||||||||||||| ||||| ||| || |||||||  | |||||||| ||||||||||||||||| ||  | |||||||| ||||| |||| ||||||     
T  2149119 tgttagtggtgcttttagacctggagtactaacagctttgatgggtgtaagtggtgctggaaagactactttaatggatgttttagctggaataaaaact 2149020  T
Q  301 ggtggatatattgaaggaa 319  Q
     ||||||| ||||||||||    
T  2149019 agtggatacattgaaggaa 2149001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 205 - 405
Target Start/End: Original strand, 19542561 - 19542761
Alignment:
Q  205 agtggtgctttcagaccaggaatattaacagcacttatgggtgtcagtggtgctggaaagacaaccctcatggatgtattagccggaagaaaaacaggtg 304  Q
    ||||||||||| || || ||||| ||||||||| |  | ||||| |||||||||||||| || ||  | ||||||||  |  | ||||| |||||  |||    
T  19542561 agtggtgcttttaggcctggaattttaacagcattagttggtgtaagtggtgctggaaaaaccactttgatggatgtgctttcaggaaggaaaactagtg 19542660  T
Q  305 gatatattgaaggaagtattaacatctctggttacccaaagaaccaaacaacatttgctcgagtcagtggttattgtgagcaaaatgatattcattctcc 404  Q
    | || |||||||||||||| | ||| || ||||| || ||||||||| |||| ||||||||  | || ||||||||||| ||||||||||| || |||||    
T  19542661 gttacattgaaggaagtatcagcatatcgggttatcctaagaaccaagcaacttttgctcggattagcggttattgtgaacaaaatgatatccactctcc 19542760  T
Q  405 c 405  Q
    |    
T  19542761 c 19542761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 241 - 365
Target Start/End: Complemental strand, 2161062 - 2160938
Alignment:
Q  241 atgggtgtcagtggtgctggaaagacaaccctcatggatgtattagccggaagaaaaacaggtggatatattgaaggaagtattaacatctctggttacc 340  Q
    |||||||| |||||||| |||||||| || || |||||||| ||||| ||||| ||||| |||||||||||||| ||||  || |  || || || || |    
T  2161062 atgggtgtaagtggtgccggaaagactactctaatggatgttttagctggaaggaaaactggtggatatattgatggaaacatcacaatatccggctatc 2160963  T
Q  341 caaagaaccaaacaacatttgctcg 365  Q
    ||||||| |||| ||||||||||||    
T  2160962 caaagaatcaaaaaacatttgctcg 2160938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 274 - 404
Target Start/End: Original strand, 2886962 - 2887092
Alignment:
Q  274 atggatgtattagccggaagaaaaacaggtggatatattgaaggaagtattaacatctctggttacccaaagaaccaaacaacatttgctcgagtcagtg 373  Q
    |||||||| || || || || ||||| ||||| |||||||| || || || || || ||||| ||||| || || |||  ||| ||||||||| ||  ||    
T  2886962 atggatgttttggctggtaggaaaactggtggttatattgacgggagcataaaaatttctgggtaccctaaaaaacaagaaacgtttgctcgaatctctg 2887061  T
Q  374 gttattgtgagcaaaatgatattcattctcc 404  Q
    ||||||||||||| |||||||| ||||||||    
T  2887062 gttattgtgagcagaatgatatccattctcc 2887092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 318
Target Start/End: Complemental strand, 43457762 - 43457685
Alignment:
Q  241 atgggtgtcagtggtgctggaaagacaaccctcatggatgtattagccggaagaaaaacaggtggatatattgaagga 318  Q
    ||||| || ||||| ||||||||||||||  | |||||||| ||||| ||||| || |||||||| || |||||||||    
T  43457762 atgggagttagtggagctggaaagacaactttgatggatgttttagctggaaggaagacaggtggttacattgaagga 43457685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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