View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9653_low_20 (Length: 408)
Name: NF9653_low_20
Description: NF9653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9653_low_20 |
 | |
|
| [»] chr7 (28 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 345; Significance: 0; HSPs: 28)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 4 - 408
Target Start/End: Original strand, 10494697 - 10495101
Alignment:
| Q |
4 |
aatattgttgacagttgtctcagagattcaaagatatacaagaatgatattgatgatgttgtactcgtgggtggctcgtctaggattcccaaagtgcagg |
103 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| || |||||||||||||||||||||||||||||||||| |
|
|
| T |
10494697 |
aatattgttgacagttgtctcagggattcaaagatatacaagaatgatattgatgatattgttcttgtgggtggctcgtctaggattcccaaagtgcagg |
10494796 |
T |
|
| Q |
104 |
atctattgctagagtttttcaaggggaaggctttgtttatgaatatcaacccagatgaggctattgcatatggcgctgctgttcaggctgctattttgag |
203 |
Q |
| |
|
||||||||||||| |||||||||||||||| || || ||| ||||||||||||||||||| |||| ||||| || ||||||||||||||||||||||| |
|
|
| T |
10494797 |
atctattgctagaatttttcaaggggaaggaattattcatgcgtatcaacccagatgaggctgttgcttatggtgcagctgttcaggctgctattttgag |
10494896 |
T |
|
| Q |
204 |
tgaaggctttaagaatgtcccgaacttggtgctacgagatgttaccccattgtcacttggtattgaagtaacaaatgaagatatcatggatgtggtgatt |
303 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10494897 |
tgaaggctttaagaatgtcccgaacttggtgctacgagatgttaccccattgtcacttggtattgaagtaacaaatgaagatatcatggatgtggtgatt |
10494996 |
T |
|
| Q |
304 |
cctaggaacacttccatccctgtcaagatgactaaaatattttatacagctggagataattgtggtgtctcttttaacgtatatgagggtgagagagcaa |
403 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10494997 |
cctaggaacacttccatccctgtcaagatgactaaaatattttatacagctggagataattgtggtgtctcttttaacgtatatgagggtgagagagcaa |
10495096 |
T |
|
| Q |
404 |
gagct |
408 |
Q |
| |
|
||||| |
|
|
| T |
10495097 |
gagct |
10495101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 408
Target Start/End: Complemental strand, 8654298 - 8653885
Alignment:
| Q |
1 |
atcaatattgttgacagttgtctcagagattcaaagatatacaagaatgatattgatgatgttgtactcgtgggtggctcgtctaggattcccaaagtgc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8654298 |
atcaatattgttgacagttgtctcagagattcaaagatatacaagaatgatattgatgatgttgtactcgtgggtggctcgtctaggattcccaaagtgc |
8654199 |
T |
|
| Q |
101 |
aggatctattgctagagtttttcaaggggaaggctttgtttatgaatatcaacccagatgaggctattgcatatggcgctgctgttcaggctgctatttt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8654198 |
aggatctattgctagagtttttcaaggggaaggctttgtttatgaatatcaacccagatgaggctattgcatatggcgctgctgttcaggctgctatttt |
8654099 |
T |
|
| Q |
201 |
gagtgaaggctttaagaatgtcccgaacttggtgctacgagatgttaccccattgtcacttggtattg---aagtaacaaat---gaagatatcatggat |
294 |
Q |
| |
|
|||||||| ||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| | || |||| || ||| ||||||||||| |
|
|
| T |
8654098 |
gagtgaagactttaagaatgtccccaacttggtgctacgtgatgttaccccattgtcacttggtatcgcaacagcaacatattgggaaaatatcatggat |
8653999 |
T |
|
| Q |
295 |
gtggtgattcctaggaacacttccatccctgtcaagatgactaaaatattttatacagctggagataattgtggtgtctcttttaacgtatatgagggtg |
394 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| | |||||| || || ||||||| |||||||||||||| |||| ||| || |||||||||| |
|
|
| T |
8653998 |
gtggtgattcctaggaacacttccatccctgtcaaaaatactaaaggatattgtacagctatagataattgtggtgcctctattattgtttatgagggtg |
8653899 |
T |
|
| Q |
395 |
agagagcaagagct |
408 |
Q |
| |
|
||||| |||||||| |
|
|
| T |
8653898 |
agagaccaagagct |
8653885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 4 - 331
Target Start/End: Complemental strand, 8667264 - 8666937
Alignment:
| Q |
4 |
aatattgttgacagttgtctcagagattcaaagatatacaagaatgatattgatgatgttgtactcgtgggtggctcgtctaggattcccaaagtgcagg |
103 |
Q |
| |
|
||||| ||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| |
|
|
| T |
8667264 |
aatatagttgacacctgtctcagggattcaaagatatacaagaatgatattgatgatgttgtacttgtcggtggctcgtctaggattcccaaagtgcagg |
8667165 |
T |
|
| Q |
104 |
atctattgctagagtttttcaaggggaaggctttgtttatgaatatcaacccagatgaggctattgcatatggcgctgctgttcaggctgctattttgag |
203 |
Q |
| |
|
| | ||||||||| | |||||||||||||| || || ||| |||||||||||| |||||| |||| ||||| || ||||||||||||||||||||||| |
|
|
| T |
8667164 |
aacaattgctagaatatttcaaggggaaggaattattcatgggtatcaacccagacgaggctgttgcttatggtgcagctgttcaggctgctattttgag |
8667065 |
T |
|
| Q |
204 |
tgaaggctttaagaatgtcccgaacttggtgctacgagatgttaccccattgtcacttggtattgaagtaacaaatgaagatatcatggatgtggtgatt |
303 |
Q |
| |
|
|||||||| |||||||||||| |||||||||||||||||||| ||||| ||||||||||||||| |||| | |||| |||||||| |||||||||| |
|
|
| T |
8667064 |
tgaaggctgtaagaatgtccccaacttggtgctacgagatgtgacccctttgtcacttggtatttctgtaagtattgaacatatcatgagtgtggtgatt |
8666965 |
T |
|
| Q |
304 |
cctaggaacacttccatccctgtcaaga |
331 |
Q |
| |
|
||||| ||||||||||| |||||||||| |
|
|
| T |
8666964 |
cctagaaacacttccatacctgtcaaga |
8666937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 147 - 408
Target Start/End: Original strand, 13333834 - 13334095
Alignment:
| Q |
147 |
tatcaacccagatgaggctattgcatatggcgctgctgttcaggctgctattttgagtgaaggctttaagaatgtcccgaacttggtgctacgagatgtt |
246 |
Q |
| |
|
||||||||||||||||||| |||| ||||| || ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
13333834 |
tatcaacccagatgaggctgttgcttatggtgcagctgttcaggctgctattttgagtgaaggctttaagactgtcccgaacttggtgctacgagatgtt |
13333933 |
T |
|
| Q |
247 |
accccattgtcacttggtattgaagtaacaaatgaagatatcatggatgtggtgattcctaggaacacttccatccctgtcaagatgactaa---aatat |
343 |
Q |
| |
|
| |||||| |||||||||||| ||| | ||||| |||||||| |||| |||||||||||||||||||||||||||||||||| |||||| | || |
|
|
| T |
13333934 |
atcccattatcacttggtatttcagt---atatgaacatatcatgaatgttgtgattcctaggaacacttccatccctgtcaagaagactaaaggaggat |
13334030 |
T |
|
| Q |
344 |
tttatacagctggagataattgtggtgtctcttttaacgtatatgagggtgagagagcaagagct |
408 |
Q |
| |
|
||||||||||| |||||||||| |||||||| || | ||||||||||||||||||||||||||| |
|
|
| T |
13334031 |
attatacagctgaagataattgttgtgtctctattgatgtatatgagggtgagagagcaagagct |
13334095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 9 - 266
Target Start/End: Complemental strand, 8659203 - 8658946
Alignment:
| Q |
9 |
tgttgacagttgtctcagagattcaaagatatacaagaatgatattgatgatgttgtactcgtgggtggctcgtctaggattcccaaagtgcaggatcta |
108 |
Q |
| |
|
|||||| |||||||| || |||||||| ||| | | || ||||||||| ||| |||| || |||||||| ||||||||||||||||||||||| |||||| |
|
|
| T |
8659203 |
tgttgagagttgtcttagcgattcaaaaatacagatgagtgatattgacgatattgttcttgtgggtggttcgtctaggattcccaaagtgcaagatcta |
8659104 |
T |
|
| Q |
109 |
ttgctagagtttttcaaggggaaggctttgtttatgaatatcaacccagatgaggctattgcatatggcgctgctgttcaggctgctattttgagtgaag |
208 |
Q |
| |
|
|||| ||| ||||| ||||| ||| | | || ||||||||||||||||||| |||| ||||| || ||| |||| |||||| |||| || ||| |
|
|
| T |
8659103 |
ttgcaagaccttttcccaaagaaggttttatacaagagtatcaacccagatgaggctgttgcttatggtgcagctcttcaagctgctgttttaagcaaag |
8659004 |
T |
|
| Q |
209 |
gctttaagaatgtcccgaacttggtgctacgagatgttaccccattgtcacttggtat |
266 |
Q |
| |
|
|||||||||||||||| ||||||||||| | ||||||||||||||||||||||||||| |
|
|
| T |
8659003 |
gctttaagaatgtcccaaacttggtgctgcaagatgttaccccattgtcacttggtat |
8658946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 10 - 266
Target Start/End: Complemental strand, 1301299 - 1301044
Alignment:
| Q |
10 |
gttgacagttgtctcagagattcaaagatatacaagaatgatattgatgatgttgtactcgtgggtggctcgtctaggattcccaaagtgcaggatctat |
109 |
Q |
| |
|
||||| |||||||| || |||||||| |||| || || |||||| |||||| |||| || |||||||||||||||||||||||||||||||| ||| ||| |
|
|
| T |
1301299 |
gttgagagttgtcttagcgattcaaaaatatgcatgagtgatatcgatgatattgttcttgtgggtggctcgtctaggattcccaaagtgcaagatatat |
1301200 |
T |
|
| Q |
110 |
tgctagagtttttcaaggggaaggctttgtttatgaatatcaacccagatgaggctattgcatatggcgctgctgttcaggctgctattttgagtgaagg |
209 |
Q |
| |
|
||| ||| ||||| || ||| | ||| | | || ||||||||| || |||||| |||| ||||| || ||| |||| ||||||||||| || |||| |
|
|
| T |
1301199 |
tgcaagacattttcccggagaaagttttatacaagagtatcaaccc-gacgaggctgttgcttatggtgcagctattcaagctgctattttaagcaaagg |
1301101 |
T |
|
| Q |
210 |
ctttaagaatgtcccgaacttggtgctacgagatgttaccccattgtcacttggtat |
266 |
Q |
| |
|
|| ||||||||||| ||||||||||| | ||||||||||||||||||||||||||| |
|
|
| T |
1301100 |
attcaagaatgtcccaaacttggtgctgcaagatgttaccccattgtcacttggtat |
1301044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 191 - 328
Target Start/End: Original strand, 8671608 - 8671745
Alignment:
| Q |
191 |
ctgctattttgagtgaaggctttaagaatgtcccgaacttggtgctacgagatgttaccccattgtcacttggtattgaagtaacaaatgaagatatcat |
290 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| | || | |||| ||||||| |
|
|
| T |
8671608 |
ctgctattttgagcaaaggctttaagaatgtccccaacttggtgctacgagatgttacgccattgtcacttggtattgctgcaaggattgaacatatcat |
8671707 |
T |
|
| Q |
291 |
ggatgtggtgattcctaggaacacttccatccctgtca |
328 |
Q |
| |
|
| |||||||||||| || ||||||||||| ||||||| |
|
|
| T |
8671708 |
gagtgtggtgattccaagaaacacttccatacctgtca |
8671745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 55 - 247
Target Start/End: Complemental strand, 8537830 - 8537638
Alignment:
| Q |
55 |
gatgatgttgtactcgtgggtggctcgtctaggattcccaaagtgcaggatctattgctagagtttttcaaggggaaggctttgtttatgaatatcaacc |
154 |
Q |
| |
|
|||||||||||||| || |||||||| ||||||||||||||||||||| ||| ||| | | ||||||| |||||||| | | |||| | ||||||| |
|
|
| T |
8537830 |
gatgatgttgtactagttggtggctcttctaggattcccaaagtgcagagtctgctgcaaaactttttcagggggaaggatatttttaaaagcatcaacc |
8537731 |
T |
|
| Q |
155 |
cagatgaggctattgcatatggcgctgctgttcaggctgctattttgagtgaaggctttaagaatgtcccgaacttggtgctacgagatgtta |
247 |
Q |
| |
|
| ||||| ||| |||| ||||| |||||||| ||||||||| | ||||| | |||| |||||| ||| |||||||||||||| |||||||||| |
|
|
| T |
8537730 |
ctgatgaagctgttgcttatggtgctgctgtccaggctgctttgttgagcggaggcattaagactgttccgaacttggtgctgcgagatgtta |
8537638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 73 - 335
Target Start/End: Original strand, 29582233 - 29582492
Alignment:
| Q |
73 |
ggtggctcgtctaggattcccaaagtgcaggatctattgctagagtttttcaaggggaaggctttgtttatgaatatcaacccagatgaggctattgcat |
172 |
Q |
| |
|
|||||||| ||||| |||||||||||||| | ||||||| ||| |||||||||||||||| ||||| |||| |||||||| ||||||||| |||| | |
|
|
| T |
29582233 |
ggtggctcttctagaattcccaaagtgcatcagctattgcaagaatttttcaaggggaaggatttgtgcatgagcatcaaccctgatgaggctgttgctt |
29582332 |
T |
|
| Q |
173 |
atggcgctgctgttcaggctgctattttgagtgaaggctttaagaatgtcccgaacttggtgctacgagatgttaccccattgtcacttggtattgaagt |
272 |
Q |
| |
|
|||| || ||||| ||||||||| | ||| ||||||| || ||||||| || | || | | | |||| |||| || |||||||||||||| | |
|
|
| T |
29582333 |
atggtgcagctgtgcaggctgctttgctgattgaaggcattgagaatgttccagattttatcttgcaagatattacacccttgtcacttggtat---atc |
29582429 |
T |
|
| Q |
273 |
aacaaatgaagatatcatggatgtggtgattcctaggaacacttccatccctgtcaagatgac |
335 |
Q |
| |
|
|||||| | |||||||||| |||||||||||||||||||||| |||| |||| ||||||||| |
|
|
| T |
29582430 |
aacaaaaggagatatcatgagtgtggtgattcctaggaacactcccattcctgccaagatgac |
29582492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 56 - 316
Target Start/End: Complemental strand, 6789305 - 6789048
Alignment:
| Q |
56 |
atgatgttgtactcgtgggtggctcgtctaggattcccaaagtgcaggatctattgctagagtttttcaaggggaaggctttgtttatgaatatcaaccc |
155 |
Q |
| |
|
|||||||||| || || ||||| || ||||| |||||||||||||| | ||||||| ||| |||||| ||| |||| ||||| |||| |||||||| |
|
|
| T |
6789305 |
atgatgttgtccttgttggtgggtcttctagaattcccaaagtgcaacaactattgcaagaagttttcatgggaaaggatttgtgcatgagcatcaaccc |
6789206 |
T |
|
| Q |
156 |
agatgaggctattgcatatggcgctgctgttcaggctgctattttgagtgaaggctttaagaatgtcccgaacttggtgctacgagatgttaccccattg |
255 |
Q |
| |
|
||||||||| |||| || || || ||||| ||||||||| | ||||| ||||||| ||||| ||| || ||||||||||| | ||||||||| || ||| |
|
|
| T |
6789205 |
tgatgaggctgttgcttacggtgcagctgtccaggctgctttgttgagcgaaggctctaagagtgttccaaacttggtgctgcaagatgttacaccgttg |
6789106 |
T |
|
| Q |
256 |
tcacttggtattgaagtaacaaatgaagatatcatggatgtggtgattcctaggaacactt |
316 |
Q |
| |
|
|| ||||||| | ||||| | | | || ||||| ||||||||||||||||||||||| |
|
|
| T |
6789105 |
tctcttggtaaggcagtaata---ggaaatgtcatgagtgtggtgattcctaggaacactt |
6789048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 55 - 317
Target Start/End: Complemental strand, 8590432 - 8590173
Alignment:
| Q |
55 |
gatgatgttgtactcgtgggtggctcgtctaggattcccaaagtgcaggatctattgctagagtttttcaaggggaaggctttgtttatgaatatcaacc |
154 |
Q |
| |
|
|||||||||||||| || ||||| || ||||||||||||||||||||| | ||||||| ||| ||||| | |||||||| | | | | | ||||| | |
|
|
| T |
8590432 |
gatgatgttgtacttgttggtggttcttctaggattcccaaagtgcagcagctattgcaagacttttttatggggaaggatctttacaatagcatcaatc |
8590333 |
T |
|
| Q |
155 |
cagatgaggctattgcatatggcgctgctgttcaggctgctattttgagtgaaggctttaagaatgtcccgaacttggtgctacgagatgttaccccatt |
254 |
Q |
| |
|
||||||||||| |||| ||||| || |||||||| |||||| | | |||| || |||||||||| || || |||||||||| ||||||||| ||||| |
|
|
| T |
8590332 |
cagatgaggctgttgcttatggtgcagctgttcaagctgctttgctttgtgatgggattaagaatgttcctaatttggtgctacaagatgttactccatt |
8590233 |
T |
|
| Q |
255 |
gtcacttggtattgaagt-aacaaatgaagatatcatggatgtggtgattcctaggaacacttc |
317 |
Q |
| |
|
||| |||||| | || || | |||| |||||||||||||| |||||||||| ||||||||| |
|
|
| T |
8590232 |
gtctcttggt----acgtcaatatatgatgatatcatggatgtagtgattcctaagaacacttc |
8590173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 151 - 266
Target Start/End: Complemental strand, 8545331 - 8545216
Alignment:
| Q |
151 |
aacccagatgaggctattgcatatggcgctgctgttcaggctgctattttgagtgaaggctttaagaatgtcccgaacttggtgctacgagatgttaccc |
250 |
Q |
| |
|
||||| ||||||||| |||| ||||| || ||||| ||||||||| | ||||||||| | |||||||||||| ||| ||||||||||||||||||||| |
|
|
| T |
8545331 |
aaccctgatgaggctgttgcttatggtgcagctgtccaggctgctttgctgagtgaagacaataagaatgtcccaaacatggtgctacgagatgttaccc |
8545232 |
T |
|
| Q |
251 |
cattgtcacttggtat |
266 |
Q |
| |
|
| |||||||||||||| |
|
|
| T |
8545231 |
ctttgtcacttggtat |
8545216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #13
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 55 - 266
Target Start/End: Complemental strand, 8609711 - 8609500
Alignment:
| Q |
55 |
gatgatgttgtactcgtgggtggctcgtctaggattcccaaagtgcaggatctattgctagagtttttcaaggggaaggctttgtttatgaatatcaacc |
154 |
Q |
| |
|
||||||||||| || || || || || ||||||||||| |||||| || | ||| ||| ||| |||||||| || |||| ||||| ||||| ||||||| |
|
|
| T |
8609711 |
gatgatgttgttcttgttggaggttcttctaggattccgaaagtgaagcagctactgcaagactttttcaatggaaaggatttgtgtatgagcatcaacc |
8609612 |
T |
|
| Q |
155 |
cagatgaggctattgcatatggcgctgctgttcaggctgctattttgagtgaaggctttaagaatgtcccgaacttggtgctacgagatgttaccccatt |
254 |
Q |
| |
|
| |||||||| |||| ||||| |||||||| ||||||||| | ||| |||||||| | || || || ||||||||||| ||||||||||| || || |
|
|
| T |
8609611 |
ctgatgaggcggttgcttatggtgctgctgtccaggctgctttgttgggtgaaggcatcaaatcagttccaaacttggtgctgcgagatgttacaccttt |
8609512 |
T |
|
| Q |
255 |
gtcacttggtat |
266 |
Q |
| |
|
|||||||||||| |
|
|
| T |
8609511 |
gtcacttggtat |
8609500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #14
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 53 - 362
Target Start/End: Complemental strand, 17267735 - 17267429
Alignment:
| Q |
53 |
ttgatgatgttgtactcgtgggtggctcgtctaggattcccaaagtgcaggatctattgctagagtttttcaaggggaaggctttgtttatgaatatcaa |
152 |
Q |
| |
|
||||||||||||| || || ||||| || ||||||||||| ||||||||| | ||||||| | || ||||||||||||| || | | | |||||| |
|
|
| T |
17267735 |
ttgatgatgttgtccttgttggtgggtcttctaggattccgaaagtgcagcaactattgcagaacttcttcaaggggaaggaattatgcaaaagtatcaa |
17267636 |
T |
|
| Q |
153 |
cccagatgaggctattgcatatggcgctgctgttcaggctgctattttgagtgaaggctttaagaatgtcccgaacttggtgctacgagatgttacccca |
252 |
Q |
| |
|
||| ||||||||| |||| ||||| |||||||||||||||||| | || |||| | || | |||||||| || ||||||||| | ||||| | ||| |
|
|
| T |
17267635 |
ccctgatgaggctgttgcttatggtgctgctgttcaggctgctttgttaagtggaagcgtcaagaatgttccaaacttggtgttgattgatgtcgcacca |
17267536 |
T |
|
| Q |
253 |
ttgtcacttggtattgaagtaacaaatgaagatatcatggatgtggtgattcctaggaacacttccatccctgtcaagatgactaaaatattttatacag |
352 |
Q |
| |
|
| || ||||||||||| ||| | || ||| ||||| |||||||||||||||||||||||| || ||||||||||| || |||| || | ||||| |
|
|
| T |
17267535 |
ctatctcttggtattgatttaatacat---gatgtcatgagtgtggtgattcctaggaacacttcaattcctgtcaagattacaaaaaaatatattacag |
17267439 |
T |
|
| Q |
353 |
ctggagataa |
362 |
Q |
| |
|
||| |||||| |
|
|
| T |
17267438 |
ctgcagataa |
17267429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #15
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 55 - 257
Target Start/End: Complemental strand, 8576120 - 8575918
Alignment:
| Q |
55 |
gatgatgttgtactcgtgggtggctcgtctaggattcccaaagtgcaggatctattgctagagtttttcaaggggaaggctttgtttatgaatatcaacc |
154 |
Q |
| |
|
||||||||||| || || ||||| || ||||||||||| |||||| | ||||| | ||| ||||||||||||||| || | || || ||||||| |
|
|
| T |
8576120 |
gatgatgttgtccttgttggtggttcttctaggattcctaaagtgagacagctattacaggaggttttcaaggggaaggaattatgtaagagcatcaacc |
8576021 |
T |
|
| Q |
155 |
cagatgaggctattgcatatggcgctgctgttcaggctgctattttgagtgaaggctttaagaatgtcccgaacttggtgctacgagatgttaccccatt |
254 |
Q |
| |
|
| ||||||||| |||| ||||| |||| ||| || |||||| | |||||||||||| ||||||||| || ||||||||| ||||||||||||| || || |
|
|
| T |
8576020 |
ctgatgaggctgttgcttatggtgctgttgtccaagctgctttgttgagtgaaggcagtaagaatgttccaaacttggtgttacgagatgttacaccgtt |
8575921 |
T |
|
| Q |
255 |
gtc |
257 |
Q |
| |
|
||| |
|
|
| T |
8575920 |
gtc |
8575918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #16
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 55 - 266
Target Start/End: Complemental strand, 8616475 - 8616261
Alignment:
| Q |
55 |
gatgatgttgtactcgtgggtggctcgtctaggattcccaaagtgcaggatctattgctagagtttttcaaggggaaggctttgtttatgaatatcaacc |
154 |
Q |
| |
|
|||||| |||| || || |||||||||||||||||||| ||||||||||| |||||| || |||||| | ||||||| ||||| | ||| ||||| | |
|
|
| T |
8616475 |
gatgatattgttcttgtcggtggctcgtctaggattcctaaagtgcaggaactattgagtgactttttcgatgggaaggatttgtgcaagaacatcaatc |
8616376 |
T |
|
| Q |
155 |
cagatgaggctattgcatatggcgctgctgttcaggctgctattttg---agtgaaggctttaagaatgtcccgaacttggtgctacgagatgttacccc |
251 |
Q |
| |
|
| ||||||||| |||| ||| || || |||||||||||| | ||| | | || |||||||||||| || ||||||| ||| |||||||||||||| |
|
|
| T |
8616375 |
ctgatgaggctgttgctagtggggcagcagttcaggctgctttgttgggtactacagactttaagaatgttccaaacttggcgctgcgagatgttacccc |
8616276 |
T |
|
| Q |
252 |
attgtcacttggtat |
266 |
Q |
| |
|
||||||||||||| |
|
|
| T |
8616275 |
tctgtcacttggtat |
8616261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #17
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 4 - 266
Target Start/End: Original strand, 8586029 - 8586291
Alignment:
| Q |
4 |
aatattgttgacagttgtctcagagattcaaagatatacaagaatgatattgatgatgttgtactcgtgggtggctcgtctaggattcccaaagtgcagg |
103 |
Q |
| |
|
|||| |||||| |||||||| | ||||| |||||| | ||||||| | | || ||| |||| || || ||||||||||| || ||||||||||| |||| |
|
|
| T |
8586029 |
aatactgttgagagttgtcttaccgattctaagatagagaagaatggtgtagacgatattgtccttgtcggtggctcgtccagaattcccaaagtacagg |
8586128 |
T |
|
| Q |
104 |
atctattgctagagtttttcaaggggaaggctttgtttatgaatatcaacccagatgaggctattgcatatggcgctgctgttcaggctgctattttgag |
203 |
Q |
| |
|
| |||||| || || ||||| ||||| | ||| | | ||| ||||| || ||||||||| |||| ||| ||||| ||||||||| || | || | |
|
|
| T |
8586129 |
aactattgagtgacttcttcaatgggaaagatttatgcaagaacatcaatcctgatgaggctgttgctagtggggctgcagttcaggcttctttgctgtg |
8586228 |
T |
|
| Q |
204 |
tgaaggctttaagaatgtcccgaacttggtgctacgagatgttaccccattgtcacttggtat |
266 |
Q |
| |
|
| ||| ||||||||| || || ||||||||||| |||||||||||||| ||||||||||||| |
|
|
| T |
8586229 |
taaagactttaagaaagttccaaacttggtgctgcgagatgttacccctctgtcacttggtat |
8586291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #18
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 52 - 234
Target Start/End: Complemental strand, 17260038 - 17259856
Alignment:
| Q |
52 |
attgatgatgttgtactcgtgggtggctcgtctaggattcccaaagtgcaggatctattgctagagtttttcaaggggaaggctttgtttatgaatatca |
151 |
Q |
| |
|
|||||||||||||| || || ||||| || ||||||||||| ||||||||| | ||||||| || || |||||||| |||| || | | || |||| |
|
|
| T |
17260038 |
attgatgatgttgtccttgttggtggatcttctaggattccgaaagtgcagcaactattgcaggatttcttcaagggtaaggaattatgcaagagcatca |
17259939 |
T |
|
| Q |
152 |
acccagatgaggctattgcatatggcgctgctgttcaggctgctattttgagtgaaggctttaagaatgtcccgaacttggtg |
234 |
Q |
| |
|
|||| ||||||||| |||| ||||| |||||||||||||||||| | || |||| | || | |||||||| || ||||||||| |
|
|
| T |
17259938 |
accctgatgaggctgttgcttatggtgctgctgttcaggctgctttgttaagtggaagcgtcaagaatgttccaaacttggtg |
17259856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #19
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 55 - 264
Target Start/End: Complemental strand, 8581494 - 8581285
Alignment:
| Q |
55 |
gatgatgttgtactcgtgggtggctcgtctaggattcccaaagtgcaggatctattgctagagtttttcaaggggaaggctttgtttatgaatatcaacc |
154 |
Q |
| |
|
||||||||||| || || ||||| || ||||||||||| |||||| | ||||| | ||||||||| ||||||||| || | | || ||||||| |
|
|
| T |
8581494 |
gatgatgttgtccttgttggtggttcttctaggattcctaaagtgagacagctattacaggagtttttccaggggaaggaattatgcaagagcatcaacc |
8581395 |
T |
|
| Q |
155 |
cagatgaggctattgcatatggcgctgctgttcaggctgctattttgagtgaaggctttaagaatgtcccgaacttggtgctacgagatgttaccccatt |
254 |
Q |
| |
|
| ||||||||| |||| ||||| |||||| ||||||||||| | | ||||||||| |||||| ||| || |||||| | | ||||||||||| ||||| |
|
|
| T |
8581394 |
ctgatgaggctgttgcttatggtgctgctattcaggctgctttggttagtgaaggcattaagagtgttccaaacttgattttgcgagatgttacaccatt |
8581295 |
T |
|
| Q |
255 |
gtcacttggt |
264 |
Q |
| |
|
|||||||||| |
|
|
| T |
8581294 |
gtcacttggt |
8581285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #20
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 9 - 234
Target Start/End: Original strand, 27831203 - 27831428
Alignment:
| Q |
9 |
tgttgacagttgtctcagagattcaaagatatacaagaatgatattgatgatgttgtactcgtgggtggctcgtctaggattcccaaagtgcaggatcta |
108 |
Q |
| |
|
|||||| |||||||||| || || ||||| |||||| | ||| ||||||||||| || || |||||||| || |||||||||||||||||| | ||| |
|
|
| T |
27831203 |
tgttgagagttgtctcactgactctaagatggacaagagtagtatagatgatgttgtccttgttggtggctcttcaaggattcccaaagtgcagcagcta |
27831302 |
T |
|
| Q |
109 |
ttgctagagtttttcaaggggaaggctttgtttatgaatatcaacccagatgaggctattgcatatggcgctgctgttcaggctgctattttgagtgaag |
208 |
Q |
| |
|
||| || ||||||||||| |||| ||||| | || ||||| || ||||||||| |||| | ||| || ||||| ||||||||| | |||||||| | |
|
|
| T |
27831303 |
ttggcggactttttcaagggaaaggatttgtgcaagagcatcaatcctgatgaggctgttgcttttggtgcagctgtgcaggctgctttgttgagtgatg |
27831402 |
T |
|
| Q |
209 |
gctttaagaatgtcccgaacttggtg |
234 |
Q |
| |
|
| ||| |||||| || ||||||||| |
|
|
| T |
27831403 |
acattatgaatgttccaaacttggtg |
27831428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #21
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 55 - 263
Target Start/End: Original strand, 7878107 - 7878315
Alignment:
| Q |
55 |
gatgatgttgtactcgtgggtggctcgtctaggattcccaaagtgcaggatctattgctagagtttttcaaggggaaggctttgtttatgaatatcaacc |
154 |
Q |
| |
|
|||||||||||||| || ||||| || |||||||||| |||||||||| | ||||||| || ||||| |||||||||| | | | | | ||||||| |
|
|
| T |
7878107 |
gatgatgttgtacttgttggtggatcatctaggattctcaaagtgcagcagctattgcaggacttttttaaggggaaggatatttgcagtagcatcaacc |
7878206 |
T |
|
| Q |
155 |
cagatgaggctattgcatatggcgctgctgttcaggctgctattttgagtgaaggctttaagaatgtcccgaacttggtgctacgagatgttaccccatt |
254 |
Q |
| |
|
| ||||| ||| |||| ||||| || ||||||||||||||| | | |||| || |||||||||| || || |||||| | | ||||||||| ||||| |
|
|
| T |
7878207 |
cggatgaagctgttgcttatggtgcagctgttcaggctgctctgctttgtgatggtattaagaatgttcctaatttggtgttgcaagatgttactccatt |
7878306 |
T |
|
| Q |
255 |
gtcacttgg |
263 |
Q |
| |
|
||| ||||| |
|
|
| T |
7878307 |
gtctcttgg |
7878315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #22
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 82 - 266
Target Start/End: Original strand, 29578073 - 29578257
Alignment:
| Q |
82 |
tctaggattcccaaagtgcaggatctattgctagagtttttcaaggggaaggctttgtttatgaatatcaacccagatgaggctattgcatatggcgctg |
181 |
Q |
| |
|
||||| ||||||||||||| | | ||||||| ||| ||||||||||| | || ||||| |||| || ||||| || |||||| |||| ||||| || | |
|
|
| T |
29578073 |
tctagaattcccaaagtgcggaaactattgcaagactttttcaagggtagggatttgtgcatgagcataaaccctgacgaggctgttgcttatggtgcag |
29578172 |
T |
|
| Q |
182 |
ctgttcaggctgctattttgagtgaaggctttaagaatgtcccgaacttggtgctacgagatgttaccccattgtcacttggtat |
266 |
Q |
| |
|
|||| ||||||||| | |||| ||| ||| |||||||||| || || ||||| | |||||| |||| || ||||| |||||||| |
|
|
| T |
29578173 |
ctgtgcaggctgctttgttgattgatggcattaagaatgttccaaatttggtcttgcgagatattacacccttgtcgcttggtat |
29578257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #23
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 4 - 51
Target Start/End: Original strand, 13333779 - 13333826
Alignment:
| Q |
4 |
aatattgttgacagttgtctcagagattcaaagatatacaagaatgat |
51 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||| |||| |
|
|
| T |
13333779 |
aatattgttgacagttgtctcagggattcaaagatatacaagagtgat |
13333826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #24
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 157 - 205
Target Start/End: Complemental strand, 39985338 - 39985290
Alignment:
| Q |
157 |
gatgaggctattgcatatggcgctgctgttcaggctgctattttgagtg |
205 |
Q |
| |
|
||||||||| |||||||||| |||||||||||||||||||| ||||||| |
|
|
| T |
39985338 |
gatgaggctgttgcatatggtgctgctgttcaggctgctatcttgagtg |
39985290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 213 - 317
Target Start/End: Complemental strand, 8559019 - 8558918
Alignment:
| Q |
213 |
taagaatgtcccgaacttggtgctacgagatgttaccccattgtcacttggtattgaagtaacaaatgaagatatcatggatgtggtgattcctaggaac |
312 |
Q |
| |
|
||||||||| || ||| ||||||| ||||||||||||| ||||| |||||||||||||| || | |||||| ||| |||||||||||||||||| |
|
|
| T |
8559019 |
taagaatgttccaaacatggtgctgagagatgttacccctttgtcccttggtattgaagtgac---cggagatattatgagtgtggtgattcctaggaat |
8558923 |
T |
|
| Q |
313 |
acttc |
317 |
Q |
| |
|
||||| |
|
|
| T |
8558922 |
acttc |
8558918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #26
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 148 - 257
Target Start/End: Complemental strand, 8646578 - 8646469
Alignment:
| Q |
148 |
atcaacccagatgaggctattgcatatggcgctgctgttcaggctgctattttgagtgaaggctttaagaatgtcccgaacttggtgctacgagatgtta |
247 |
Q |
| |
|
|||||||| |||| ||| |||| |||||||| || |||||||||||| | || |||| ||||||||||||| || ||||||||| | | |||||| | |
|
|
| T |
8646578 |
atcaaccctgatgtggccgttgcttatggcgcagccgttcaggctgctttattatgtgatggctttaagaatgctccaaacttggtgtttcaagatgtca |
8646479 |
T |
|
| Q |
248 |
ccccattgtc |
257 |
Q |
| |
|
|||||||||| |
|
|
| T |
8646478 |
ccccattgtc |
8646469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 294 - 362
Target Start/End: Complemental strand, 17259794 - 17259726
Alignment:
| Q |
294 |
tgtggtgattcctaggaacacttccatccctgtcaagatgactaaaatattttatacagctggagataa |
362 |
Q |
| |
|
|||||||||||||||||||||||| || ||||||||||| || |||| || | |||||||| |||||| |
|
|
| T |
17259794 |
tgtggtgattcctaggaacacttcaattcctgtcaagattacaaaaaaatatattacagctgcagataa |
17259726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 294 - 338
Target Start/End: Complemental strand, 8569869 - 8569825
Alignment:
| Q |
294 |
tgtggtgattcctaggaacacttccatccctgtcaagatgactaa |
338 |
Q |
| |
|
|||||||||||| |||||||||||||| |||||||| | |||||| |
|
|
| T |
8569869 |
tgtggtgattccaaggaacacttccattcctgtcaaaaggactaa |
8569825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 172; Significance: 3e-92; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 4 - 331
Target Start/End: Original strand, 9336214 - 9336541
Alignment:
| Q |
4 |
aatattgttgacagttgtctcagagattcaaagatatacaagaatgatattgatgatgttgtactcgtgggtggctcgtctaggattcccaaagtgcagg |
103 |
Q |
| |
|
||||||||||||| |||||||| ||||||||||||||||||| | ||||||||||| |||| || ||||||||||||||||||||||| |||||||| | |
|
|
| T |
9336214 |
aatattgttgacacctgtctcagggattcaaagatatacaagagtaatattgatgatattgttcttgtgggtggctcgtctaggattccgaaagtgcaag |
9336313 |
T |
|
| Q |
104 |
atctattgctagagtttttcaaggggaaggctttgtttatgaatatcaacccagatgaggctattgcatatggcgctgctgttcaggctgctattttgag |
203 |
Q |
| |
|
| ||||||||||| |||||||||||||||| || || ||| ||||||||||||||||||| |||| ||||| || |||||||| |||||||||||||| |
|
|
| T |
9336314 |
aactattgctagaatttttcaaggggaaggaattattcatgggtatcaacccagatgaggctgttgcttatggtgcagctgttcaagctgctattttgag |
9336413 |
T |
|
| Q |
204 |
tgaaggctttaagaatgtcccgaacttggtgctacgagatgttaccccattgtcacttggtattgaagtaacaaatgaagatatcatggatgtggtgatt |
303 |
Q |
| |
|
||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| | | | || ||| |||||||| |||||||||| |
|
|
| T |
9336414 |
tgaaggctttaagaatgcgcccaacttggtgctacgagatgttaccccattgtcacttggtatcgcaacatataaggaaaatatcatgagtgtggtgatt |
9336513 |
T |
|
| Q |
304 |
cctaggaacacttccatccctgtcaaga |
331 |
Q |
| |
|
||||| ||||||||||| |||||||||| |
|
|
| T |
9336514 |
cctagaaacacttccatacctgtcaaga |
9336541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 9 - 406
Target Start/End: Complemental strand, 30775092 - 30774695
Alignment:
| Q |
9 |
tgttgacagttgtctcagagattcaaagatatacaagaatgatattgatgatgttgtactcgtgggtggctcgtctaggattcccaaagtgcaggatcta |
108 |
Q |
| |
|
|||||| |||||||| | ||||||||| || |||||| | | | |||||| |||| || || ||||| || ||||||||||||||||||||||| ||| |
|
|
| T |
30775092 |
tgttgagagttgtcttactgattcaaaggtagacaagagtagtgtagatgatattgttcttgtcggtggttcttctaggattcccaaagtgcaggaacta |
30774993 |
T |
|
| Q |
109 |
ttgctagagtttttcaaggggaaggctttgtttatgaatatcaacccagatgaggctattgcatatggcgctgctgttcaggctgctattttgagtgaag |
208 |
Q |
| |
|
|||| | || ||||| ||||||| ||||| | || ||||| || |||||||| |||| | || || ||||| ||||||||| | |||||||||| |
|
|
| T |
30774992 |
ttgcgtaatttcttcaatgggaaggatttgtgcaagagcatcaatcctgatgaggcagttgctcacggggcagctgtccaggctgctctattgagtgaag |
30774893 |
T |
|
| Q |
209 |
gctttaagaatgtcccgaacttggtgctacgagatgttaccccattgtcacttggtattgaagtaacaaatgaagatatcatggatgtggtgattcctag |
308 |
Q |
| |
|
|| ||||||||| ||| || |||||||| |||||||| ||||| ||||||||||||||| ||| ||| |||| | |||||||||||| |||||||| |
|
|
| T |
30774892 |
gcattaagaatgccccaaagttggtgctgcgagatgtcacccctttgtcacttggtatttcagt---gaatcaagacaccatggatgtggtaattcctag |
30774796 |
T |
|
| Q |
309 |
gaacacttccatccctgtcaagatgactaaaatattttatacagctggagata---attgtggtgtctcttttaacgtatatgagggtgagagagcaaga |
405 |
Q |
| |
|
||| ||||| | ||||| |||||||| ||| || | ||| ||| | |||| |||| |||||||| |||| || ||||||||||||||||||||| |
|
|
| T |
30774795 |
gaatacttctctacctgtgaagatgacaaaaggatatggtactgctagcgataaccattgccgtgtctctattaatgtttatgagggtgagagagcaaga |
30774696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 55 - 331
Target Start/End: Complemental strand, 35132250 - 35131977
Alignment:
| Q |
55 |
gatgatgttgtactcgtgggtggctcgtctaggattcccaaagtgcaggatctattgctagagtttttcaaggggaaggctttgtttatgaatatcaacc |
154 |
Q |
| |
|
||||||||||| || || || || || ||||||||||||||||||||| | ||||||| | | |||||||| ||||||| |||| | || || |||| |
|
|
| T |
35132250 |
gatgatgttgttcttgttggagggtcttctaggattcccaaagtgcagcagctattgcaaaactttttcaaagggaaggagttgtgcaagagcattaacc |
35132151 |
T |
|
| Q |
155 |
cagatgaggctattgcatatggcgctgctgttcaggctgctattttgagtgaaggctttaagaatgtcccgaacttggtgctacgagatgttaccccatt |
254 |
Q |
| |
|
| ||||||||| | || ||||| || || |||||||||||| | |||||| ||||| | || ||||| || || |||||| ||| |||||||| || || |
|
|
| T |
35132150 |
ccgatgaggctgtagcttatggggcagcagttcaggctgctttgttgagtaaaggcataaaaaatgttccaaagttggtgttacaggatgttacaccttt |
35132051 |
T |
|
| Q |
255 |
gtcacttggtattgaagtaacaaatgaagatatcatggatgtggtgattcctaggaacacttccatccctgtcaaga |
331 |
Q |
| |
|
||| ||||||| | || | | |||||||||| |||||||||||||||||||||||| ||| |||||||||| |
|
|
| T |
35132050 |
gtctcttggtaggtcaatagta---ggagatatcatgaatgtggtgattcctaggaacacttgcattcctgtcaaga |
35131977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 148 - 203
Target Start/End: Original strand, 23597052 - 23597107
Alignment:
| Q |
148 |
atcaacccagatgaggctattgcatatggcgctgctgttcaggctgctattttgag |
203 |
Q |
| |
|
|||||||| ||||||||| |||| ||||||||||| || || |||||||||||||| |
|
|
| T |
23597052 |
atcaaccctgatgaggctgttgcttatggcgctgcagtccaagctgctattttgag |
23597107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 113; Significance: 4e-57; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 50 - 266
Target Start/End: Original strand, 4678926 - 4679142
Alignment:
| Q |
50 |
atattgatgatgttgtactcgtgggtggctcgtctaggattcccaaagtgcaggatctattgctagagtttttcaaggggaaggctttgtttatgaatat |
149 |
Q |
| |
|
|||||||||||||||| || |||||||| || || |||||||||||||||||||||||||||| ||| ||||| ||| |||||| ||||| | || ||| |
|
|
| T |
4678926 |
atattgatgatgttgttcttgtgggtggttcatcgaggattcccaaagtgcaggatctattgcaagacttttttaagcggaaggatttgtgcaagagtat |
4679025 |
T |
|
| Q |
150 |
caacccagatgaggctattgcatatggcgctgctgttcaggctgctattttgagtgaaggctttaagaatgtcccgaacttggtgctacgagatgttacc |
249 |
Q |
| |
|
|||||||||||||||| |||| ||||| || ||| | || |||||||||||||| ||||| ||||||||||||||||| || ||||| |||||||||||| |
|
|
| T |
4679026 |
caacccagatgaggctgttgcttatggtgcagctatccaagctgctattttgagcgaaggttttaagaatgtcccgaattttgtgctgcgagatgttacc |
4679125 |
T |
|
| Q |
250 |
ccattgtcacttggtat |
266 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
4679126 |
ccattgtcacttggtat |
4679142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 76 - 260
Target Start/End: Original strand, 34467183 - 34467367
Alignment:
| Q |
76 |
ggctcgtctaggattcccaaagtgcaggatctattgctagagtttttcaaggggaaggctttgtttatgaatatcaacccagatgaggctattgcatatg |
175 |
Q |
| |
|
||||| ||||||||||||||||||||| | ||||||| || |||||||| || |||| | | | | | |||||||| ||||||||| | || |||| |
|
|
| T |
34467183 |
ggctcttctaggattcccaaagtgcagcagctattgcgggactttttcaatggtaaggatctatgcaatagcatcaaccctgatgaggctgtcgcttatg |
34467282 |
T |
|
| Q |
176 |
gcgctgctgttcaggctgctattttgagtgaaggctttaagaatgtcccgaacttggtgctacgagatgttaccccattgtcact |
260 |
Q |
| |
|
||| ||||| || |||||| | |||||| |||||||||| ||||| || ||||||||||| ||||||||||| ||||||||||| |
|
|
| T |
34467283 |
tcgcagctgtgcaagctgctttgttgagtaaaggctttaacaatgttccaaacttggtgctgcgagatgttacaccattgtcact |
34467367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 73 - 264
Target Start/End: Complemental strand, 15594810 - 15594619
Alignment:
| Q |
73 |
ggtggctcgtctaggattcccaaagtgcaggatctattgctagagtttttcaaggggaaggctttgtttatgaatatcaacccagatgaggctattgcat |
172 |
Q |
| |
|
||||| || |||||||||||||||||||| | |||||| || |||||| |||| |||| |||| |||| |||||||| ||||||||| |||| | |
|
|
| T |
15594810 |
ggtgggtcttctaggattcccaaagtgcaacaactattgaaggattttttcgagggaaaggaattgtgcatgagcatcaaccctgatgaggctgttgctt |
15594711 |
T |
|
| Q |
173 |
atggcgctgctgttcaggctgctattttgagtgaaggctttaagaatgtcccgaacttggtgctacgagatgttaccccattgtcacttggt |
264 |
Q |
| |
|
|||| || ||||| ||||||||| | ||||||||||| ||||| ||||| || ||||||||| ||| ||||||| | || ||||| |||||| |
|
|
| T |
15594710 |
atggtgcagctgtccaggctgctttgttgagtgaaggttttaaaaatgttccaaacttggtgatacaagatgttgcacctttgtctcttggt |
15594619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 172 - 272
Target Start/End: Original strand, 52549437 - 52549537
Alignment:
| Q |
172 |
tatggcgctgctgttcaggctgctattttgagtgaaggctttaagaatgtcccgaacttggtgctacgagatgttaccccattgtcacttggtattgaag |
271 |
Q |
| |
|
|||||||| |||||||||||||| | |||||||||||| || ||||||| || || |||||||| | |||||||| || ||||| |||| ||||||| |
|
|
| T |
52549437 |
tatggcgcagctgttcaggctgcattgttgagtgaaggcattcagaatgttccaaagttggtgctgcaggatgttacacctttgtctcttgtcattgaag |
52549536 |
T |
|
| Q |
272 |
t |
272 |
Q |
| |
|
| |
|
|
| T |
52549537 |
t |
52549537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 103; Significance: 4e-51; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 48 - 266
Target Start/End: Original strand, 16657884 - 16658102
Alignment:
| Q |
48 |
tgatattgatgatgttgtactcgtgggtggctcgtctaggattcccaaagtgcaggatctattgctagagtttttcaaggggaaggctttgtttatgaat |
147 |
Q |
| |
|
|||||||||||| ||||| || ||||||||||| ||||||||||||||||||||||||||||||| ||| ||||||||||| |||| ||| | | | | |
|
|
| T |
16657884 |
tgatattgatgacgttgttcttgtgggtggctcatctaggattcccaaagtgcaggatctattgcaagactttttcaagggcaaggatttatgcaaaagt |
16657983 |
T |
|
| Q |
148 |
atcaacccagatgaggctattgcatatggcgctgctgttcaggctgctattttgagtgaaggctttaagaatgtcccgaacttggtgctacgagatgtta |
247 |
Q |
| |
|
|||||||| ||||| ||| |||| || || || |||||||| ||||||||||||||||||||||||||||||||||| | |||||| | ||||||||| |
|
|
| T |
16657984 |
atcaacccggatgaagctgttgcttacggtgcagctgttcaagctgctattttgagtgaaggctttaagaatgtcccagatttggtgttgagagatgtta |
16658083 |
T |
|
| Q |
248 |
ccccattgtcacttggtat |
266 |
Q |
| |
|
|||||||||| |||||||| |
|
|
| T |
16658084 |
ccccattgtcgcttggtat |
16658102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 76 - 266
Target Start/End: Original strand, 16662387 - 16662577
Alignment:
| Q |
76 |
ggctcgtctaggattcccaaagtgcaggatctattgctagagtttttcaaggggaaggctttgtttatgaatatcaacccagatgaggctattgcatatg |
175 |
Q |
| |
|
||||||||||||||||| ||||||||||| |||||| | || ||||| ||||||| |||| | || |||||||| ||||||||| |||| |||| |
|
|
| T |
16662387 |
ggctcgtctaggattccaaaagtgcaggaattattgcgtaacttcttcaatgggaaggagttgtgcaagagcatcaaccctgatgaggctgttgcttatg |
16662486 |
T |
|
| Q |
176 |
gcgctgctgttcaggctgctattttgagtgaaggctttaagaatgtcccgaacttggtgctacgagatgttaccccattgtcacttggtat |
266 |
Q |
| |
|
| || ||||| || |||||| | |||||||||||| ||||| |||| || ||||||||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
16662487 |
gggcagctgtgcaagctgctgtgttgagtgaaggcattaaggatgttccaaacttggtgctgcgagacgttaccccattgtcacttggtat |
16662577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 151 - 266
Target Start/End: Complemental strand, 43625110 - 43624995
Alignment:
| Q |
151 |
aacccagatgaggctattgcatatggcgctgctgttcaggctgctattttgagtgaaggctttaagaatgtcccgaacttggtgctacgagatgttaccc |
250 |
Q |
| |
|
||||| ||||||||| |||| ||||| || ||||| |||||||||||||||||| ||||| |||||||||| || || |||||||| ||||||||||||| |
|
|
| T |
43625110 |
aaccctgatgaggctgttgcttatggtgcagctgtccaggctgctattttgagtaaaggcattaagaatgttccaaaattggtgctgcgagatgttaccc |
43625011 |
T |
|
| Q |
251 |
cattgtcacttggtat |
266 |
Q |
| |
|
| |||||||||||||| |
|
|
| T |
43625010 |
ctttgtcacttggtat |
43624995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 282 - 331
Target Start/End: Original strand, 12259179 - 12259228
Alignment:
| Q |
282 |
agatatcatggatgtggtgattcctaggaacacttccatccctgtcaaga |
331 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||| |||||||||| |
|
|
| T |
12259179 |
agatatcatggatgtggtgattcctaggaacacttgcattcctgtcaaga |
12259228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 151 - 329
Target Start/End: Complemental strand, 14703106 - 14702931
Alignment:
| Q |
151 |
aacccagatgaggctattgcatatggcgctgctgttcaggctgctattttgagtgaaggctttaagaatgtcccgaacttggtgctacgagatgttaccc |
250 |
Q |
| |
|
||||| ||||| ||| | || ||||| || ||||||||||||||| | |||||||||| | | |||||||| ||||| |||||||| | ||| |||| | |
|
|
| T |
14703106 |
aaccctgatgaagctgtagcttatggggcagctgttcaggctgctttgttgagtgaagacgtcaagaatgttccgaagttggtgcttcaggatattacac |
14703007 |
T |
|
| Q |
251 |
cattgtcacttggtattgaagtaacaaatgaagatatcatggatgtggtgattcctaggaacacttccatccctgtcaa |
329 |
Q |
| |
|
| ||||| || |||| ||| | | | || |||||||||||||||||||||||||||||||| ||| |||||||| |
|
|
| T |
14703006 |
ctttgtctctaggtagggaatt---attcggaggtatcatggatgtggtgattcctaggaacacttgcattcctgtcaa |
14702931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 157 - 329
Target Start/End: Complemental strand, 7541918 - 7541749
Alignment:
| Q |
157 |
gatgaggctattgcatatggcgctgctgttcaggctgctattttgagtgaaggctttaagaatgtcccgaacttggtgctacgagatgttaccccattgt |
256 |
Q |
| |
|
||||||||| |||| ||||| || |||||||||||||| | ||||||| |||| ||||||| | || || |||||||| | |||||||| || |||| |
|
|
| T |
7541918 |
gatgaggctgttgcttatggggcagctgttcaggctgcattgttgagtggaggcgttaagaacgctccaaagttggtgctgcaggatgttacacctttgt |
7541819 |
T |
|
| Q |
257 |
cacttggtattgaagtaacaaatgaagatatcatggatgtggtgattcctaggaacacttccatccctgtcaa |
329 |
Q |
| |
|
| ||||| | | ||| | | | |||||| |||||||||||||||||| ||||||||| ||| |||||||| |
|
|
| T |
7541818 |
ctcttggcaggggagtgata---ggagatataatggatgtggtgattcctcggaacacttgcattcctgtcaa |
7541749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 82 - 133
Target Start/End: Complemental strand, 12234456 - 12234405
Alignment:
| Q |
82 |
tctaggattcccaaagtgcaggatctattgctagagtttttcaaggggaagg |
133 |
Q |
| |
|
||||||||||||||||||||| | ||||||| || |||||||||||||||| |
|
|
| T |
12234456 |
tctaggattcccaaagtgcagcaactattgcaggattttttcaaggggaagg |
12234405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 55 - 131
Target Start/End: Original strand, 12258955 - 12259031
Alignment:
| Q |
55 |
gatgatgttgtactcgtgggtggctcgtctaggattcccaaagtgcaggatctattgctagagtttttcaaggggaa |
131 |
Q |
| |
|
||||||||||| || || ||||| || |||||||||| |||||||||| | ||||| | || |||||||||||||| |
|
|
| T |
12258955 |
gatgatgttgtccttgtaggtgggtcttctaggattctcaaagtgcagcagctattacaggattttttcaaggggaa |
12259031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 55 - 331
Target Start/End: Complemental strand, 12528298 - 12528025
Alignment:
| Q |
55 |
gatgatgttgtactcgtgggtggctcgtctaggattcccaaagtgcaggatctattgctagagtttttcaaggggaaggctttgtttatgaatatcaacc |
154 |
Q |
| |
|
|||||| ||||||| || ||||||||||||||||||||||||||| || | ||||||| |||||||||||||| |||| || | | || ||||||| |
|
|
| T |
12528298 |
gatgatattgtacttgttggtggctcgtctaggattcccaaagtgaagcagctattgcaggagtttttcaagggcaaggagttatacaagagcatcaacc |
12528199 |
T |
|
| Q |
155 |
cagatgaggctattgcatatggcgctgctgttcaggctgctattttgagtgaaggctttaagaatgtcccgaacttggtgctacgagatgttaccccatt |
254 |
Q |
| |
|
| ||||||||| |||| ||||| || ||||||||||||||| | |||||||||||| | |||| ||| ||||| || ||| | |||||||| || || |
|
|
| T |
12528198 |
ctgatgaggctgttgcttatggtgccgctgttcaggctgctttgttgagtgaaggcatgaagactgttccgaaagtgacgctgcaagatgttataccttt |
12528099 |
T |
|
| Q |
255 |
gtcacttggtattgaagtaacaaatgaagatatcatggatgtggtgattcctaggaacacttccatccctgtcaaga |
331 |
Q |
| |
|
||| |||||| || | ||| | |||| | |||||||| |||||||||||||||||| |||||||||||||| |
|
|
| T |
12528098 |
gtctcttggtttt---tctataaaaggagatcttatggatgttatgattcctaggaacacttgcatccctgtcaaga |
12528025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 151 - 266
Target Start/End: Complemental strand, 28219616 - 28219501
Alignment:
| Q |
151 |
aacccagatgaggctattgcatatggcgctgctgttcaggctgctattttgagtgaaggctttaagaatgtcccgaacttggtgctacgagatgttaccc |
250 |
Q |
| |
|
||||| ||||||||| |||| ||||| || ||||| ||||||||| | ||||||||||||||||| || || ||||| |||||||| | ||||||||| | |
|
|
| T |
28219616 |
aaccctgatgaggctgttgcttatggtgcagctgtgcaggctgctttgttgagtgaaggctttaaaaaagttccgaagttggtgctgcaagatgttacac |
28219517 |
T |
|
| Q |
251 |
cattgtcacttggtat |
266 |
Q |
| |
|
| ||||| |||||||| |
|
|
| T |
28219516 |
ctttgtctcttggtat |
28219501 |
T |
|
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