View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9653_low_23 (Length: 402)

Name: NF9653_low_23
Description: NF9653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9653_low_23
NF9653_low_23
[»] chr2 (19 HSPs)
chr2 (18-389)||(9069070-9069444)
chr2 (26-354)||(9076680-9077002)
chr2 (131-389)||(8574530-8574795)
chr2 (119-377)||(9290742-9290997)
chr2 (119-335)||(9314896-9315107)
chr2 (119-255)||(9062323-9062456)
chr2 (288-392)||(9062466-9062567)
chr2 (110-173)||(9297498-9297564)
chr2 (119-173)||(9286187-9286241)
chr2 (18-84)||(9318650-9318716)
chr2 (21-204)||(9285205-9285387)
chr2 (17-81)||(9062193-9062257)
chr2 (246-285)||(9318362-9318401)
chr2 (18-84)||(9273156-9273222)
chr2 (18-99)||(9326501-9326580)
chr2 (18-67)||(9315189-9315238)
chr2 (18-84)||(7117029-7117095)
chr2 (18-67)||(8574481-8574530)
chr2 (201-230)||(8576363-8576392)
[»] chr3 (2 HSPs)
chr3 (18-84)||(37461498-37461564)
chr3 (133-169)||(37461427-37461463)
[»] scaffold0667 (1 HSPs)
scaffold0667 (246-285)||(1412-1451)


Alignment Details
Target: chr2 (Bit Score: 321; Significance: 0; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 18 - 389
Target Start/End: Original strand, 9069070 - 9069444
Alignment:
Q  18 ggtttgtgggaaaggttgaattgataaagaatgaagctgcacccatttttatggctcattttgaattttgtctaatatcacatttattacgctgaagaat 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||    
T  9069070 ggtttgtgggaaaggttgaattgataaagaatgaagctgcacccatttttatggctcattttgaattttgtctaatatcacatttatcactctgaagaat 9069169  T
Q  118 ttgatgaatcctctctccctatggcctttctaaatggatcttctgcttttatctttt---tctagactctagtactgttgagaaaatatgaaagcacaat 214  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||   ||||||||||||||||||||||||||||||||||||||||    
T  9069170 ttgatgaatcctctctccctctggcctttctaaatggatcttctgcttttgtcttttacttctagactctagtactgttgagaaaatatgaaagcacaat 9069269  T
Q  215 gaggttggttattgtataaaacgtatcttttatttccattatctttaaattccaaactcttacaacatgctagtgaaagcacattgaggttggttactgt 314  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||    
T  9069270 gaggttggttattgtataaaacgtatcttttatttccattatctttaaattctaaactcttacaacatgctaatgaaagcacattgaggttggttactgt 9069369  T
Q  315 acgaaaagtattgctcctttcctgcgcgtttgtttgtgtgaagttgtgtcccctcttcactgtgtatgtaagtct 389  Q
    | ||||||||||||||||||| ||||||||||||||| ||| |||||||||||||||||||||||||||||||||    
T  9069370 atgaaaagtattgctcctttcttgcgcgtttgtttgtatgacgttgtgtcccctcttcactgtgtatgtaagtct 9069444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 26 - 354
Target Start/End: Original strand, 9076680 - 9077002
Alignment:
Q  26 ggaaaggttgaattgataaagaatgaagctgcacccatttttatggctcattttgaattttgtctaatatcacatttattacgctgaagaatttgatgaa 125  Q
    ||||||||||||||||||| ||||| | |||||||||||| |||||||||||||||||| |   | | |||||| |||| ||  ||||||||||||||||    
T  9076680 ggaaaggttgaattgataatgaatggaactgcacccatttctatggctcattttgaattgt---tgagatcacacttatcac--tgaagaatttgatgaa 9076774  T
Q  126 tcctctctccctatggcctttctaaatggatcttctgcttttatctttt---tctagactctagtactgttgagaaaatatgaaagcacaatgaggttgg 222  Q
    |||||||||||| ||||||||||||| ||||||||||| ||||||||||   |||||||||||||||||||||||||||||| ||||||||||||| ||     
T  9076775 tcctctctccctctggcctttctaaaaggatcttctgcctttatcttttacttctagactctagtactgttgagaaaatatggaagcacaatgaggatga 9076874  T
Q  223 ttattgtataaaacgtatcttttatttccattatctttaaattccaaactcttacaacatgctagtgaaagcacattgaggttggttactgtacgaaaag 322  Q
    ||||||||||||| |||||||||||||| ||||||| ||||||||||||    ||| ||||||  |||||||||| ||||||||||||  ||| ||||||    
T  9076875 ttattgtataaaaagtatcttttatttcgattatctctaaattccaaac----acagcatgcttatgaaagcacaatgaggttggttatagtatgaaaag 9076970  T
Q  323 tattgctcctttcctgcgcgtttgtttgtgtg 354  Q
    ||||||||||||| ||| | ||||||||||||    
T  9076971 tattgctcctttcgtgcacatttgtttgtgtg 9077002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 131 - 389
Target Start/End: Original strand, 8574530 - 8574795
Alignment:
Q  131 tctccctatggcctttctaaatggatcttctgcttttatctttt---tctagactctagtactgttgagaaaatatgaaagcacaatgaggttggttatt 227  Q
    ||||||| ||||||||||||| ||||||||||||||| ||||||   ||||||||||||||||||||| |||||||| |||||||||||||||||||| |    
T  8574530 tctccctctggcctttctaaa-ggatcttctgcttttgtcttttacttctagactctagtactgttgaaaaaatatggaagcacaatgaggttggttagt 8574628  T
Q  228 gtataaaacgtatcttttatttcc---attatctttaaattccaaactcttacaacatgctagtgaaagcacattgaggttggttactgtacgaaaagta 324  Q
    |||| ||| | |||||||||||||   ||||| |||||||||||| |||||||||||||||   |||||||||  | |||||| || |||||||| ||||    
T  8574629 gtatgaaaagaatcttttatttccattattatttttaaattccaatctcttacaacatgcttaagaaagcacaaagtggttggatattgtacgaagagta 8574728  T
Q  325 ttgctcctttcctgcgcgtttgtt--tgtgtgaagttgtgtcccctcttcactgtgtatgtaagtct 389  Q
    |||||| |||| ||||||||||||  |||||||  |||||||||||||||||||||| |||||||||    
T  8574729 ttgctcatttcgtgcgcgtttgtttgtgtgtgacattgtgtcccctcttcactgtgtgtgtaagtct 8574795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 119 - 377
Target Start/End: Complemental strand, 9290997 - 9290742
Alignment:
Q  119 tgatgaatcctctctccctatggcctttctaaatggatcttctgcttttatctttttctagactctagtactgttgagaaaatatgaaagcacaatgagg 218  Q
    ||||||| ||||||||||| || ||| |||||| |   ||||||||||| |||||| ||    ||||||||||||||| ||||||| |||||||||||||    
T  9290997 tgatgaaccctctctccctctgacctatctaaaaga--cttctgcttttgtcttttact----tctagtactgttgaggaaatatggaagcacaatgagg 9290904  T
Q  219 ttggttattgtataaaacgtatcttttatttccattatctttaaattccaaactcttacaacatgctagtgaaagcacattgaggttgg---ttactgta 315  Q
    ||||||||||||| ||| |||||||||||||||  ||||| ||||||| ||||||||||||||||||  ||| ||||||  | ||||||   ||| ||||    
T  9290903 ttggttattgtatgaaaagtatcttttatttccggtatctctaaattctaaactcttacaacatgctgatgacagcacaacgcggttggttattattgta 9290804  T
Q  316 cgaaaagtattgctcctttcctgcgcgtttgtttgtgtgaagttgtgtcccctcttcactgt 377  Q
     |||||||| |||||||||| |||| |||||||||||||| |||||||||||||||||||||    
T  9290803 tgaaaagtagtgctcctttcgtgcgtgtttgtttgtgtgacgttgtgtcccctcttcactgt 9290742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 119 - 335
Target Start/End: Complemental strand, 9315107 - 9314896
Alignment:
Q  119 tgatgaatcctctctccctatggcctttctaaatggatcttctgcttttatctttttctagactctagtactgttgagaaaatatgaaagcacaatgagg 218  Q
    ||||||||||||||||||| ||||||||||||| |||||| |||||| |  |||||  |    ||||| || |||||||||||||| ||||||| |||||    
T  9315107 tgatgaatcctctctccctctggcctttctaaaaggatctgctgcttgt--cttttaat----tctagcaccgttgagaaaatatggaagcacagtgagg 9315014  T
Q  219 ttggttattgtataaaacgtatcttttatttccattatctttaaattccaaactctt-acaacatgctagtgaaagcacattgaggttggttactgtacg 317  Q
    ||||||||||||| ||| |||| || |||||| ||||||| ||||||  |||||||| | ||||||||  ||||||||||||||||||||||| |||| |    
T  9315013 ttggttattgtatgaaaagtatgttctatttcaattatctctaaatttgaaactcttaaaaacatgcttatgaaagcacattgaggttggttattgtatg 9314914  T
Q  318 aaaagtattgctcctttc 335  Q
    ||||||||||||||||||    
T  9314913 aaaagtattgctcctttc 9314896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 119 - 255
Target Start/End: Original strand, 9062323 - 9062456
Alignment:
Q  119 tgatgaatcctctctccctatggcctttctaaatggatcttctgcttttatctttttctagactctagtactgttgagaaaatatg-aaagcacaatgag 217  Q
    ||||||||||||||||||| |||||| |||||| ||||| | ||||||||| |||| ||    ||||||||||||| ||| ||||| |||||||||||||    
T  9062323 tgatgaatcctctctccctctggcctatctaaaaggatcatttgcttttatattttact----tctagtactgttgcgaatatatggaaagcacaatgag 9062418  T
Q  218 gttggttattgtataaaacgtatcttttatttccatta 255  Q
    |||||||||||||||||| || ||||||||||||||||    
T  9062419 gttggttattgtataaaaagtgtcttttatttccatta 9062456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 288 - 392
Target Start/End: Original strand, 9062466 - 9062567
Alignment:
Q  288 tgaaagcacattgaggttggttactgtacgaaaagtattgctcctttcctgcgcgtttgtttgtgtgaagttgtgtcccctcttcactgtgtatgtaagt 387  Q
    |||||||||| |||||||||||| | || ||||||||||||||||||  ||||||||||||  ||||| ||||||| | ||||||| ||||| |||||||    
T  9062466 tgaaagcacaatgaggttggttattatatgaaaagtattgctccttttgtgcgcgtttgtt--tgtgacgttgtgt-ctctcttcattgtgtgtgtaagt 9062562  T
Q  388 ctctg 392  Q
    |||||    
T  9062563 ctctg 9062567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 110 - 173
Target Start/End: Complemental strand, 9297564 - 9297498
Alignment:
Q  110 tgaagaatttgatga---atcctctctccctatggcctttctaaatggatcttctgcttttatcttt 173  Q
    |||||||||||||||   ||||||||||||| ||||||||||||| |||||||||||||||||||||    
T  9297564 tgaagaatttgatgaggaatcctctctccctctggcctttctaaaaggatcttctgcttttatcttt 9297498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 119 - 173
Target Start/End: Complemental strand, 9286241 - 9286187
Alignment:
Q  119 tgatgaatcctctctccctatggcctttctaaatggatcttctgcttttatcttt 173  Q
    ||||||||||||||||||| ||||||||||||| |||||||||||||| ||||||    
T  9286241 tgatgaatcctctctccctctggcctttctaaaaggatcttctgctttaatcttt 9286187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 84
Target Start/End: Complemental strand, 9318716 - 9318650
Alignment:
Q  18 ggtttgtgggaaaggttgaattgataaagaatgaagctgcacccatttttatggctcattttgaatt 84  Q
    ||||||||||||||| ||||||||||| ||||| |||||||||||||||||   |||||||||||||    
T  9318716 ggtttgtgggaaaggctgaattgataatgaatggagctgcacccatttttacatctcattttgaatt 9318650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 21 - 204
Target Start/End: Original strand, 9285205 - 9285387
Alignment:
Q  21 ttgtgggaaaggttgaattgataaagaatgaagctgcacccatttttatggctcattttgaatttt--gtctaatatcacatttattacgctgaagaatt 118  Q
    |||||||||| |||||||||||||   ||| |||||||| |||||||||  ||||||||||||| |  |||| | |||||| ||| |  | |||||||||    
T  9285205 ttgtgggaaatgttgaattgataattcatggagctgcacacatttttatatctcattttgaattgtaagtctgagatcaca-ttagtgtg-tgaagaatt 9285302  T
Q  119 tg---atgaatcctctctccctatggcctttctaaatggatcttctgcttttatctttttctagactctagtactgttgagaaaatatg 204  Q
    ||   ||||||||||||||||| ||||||||||||| ||||  | ||||||||| || | ||    |||||||||||||| ||||||||    
T  9285303 tgattatgaatcctctctccctctggcctttctaaaaggattatttgcttttatattctact----tctagtactgttgaaaaaatatg 9285387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 17 - 81
Target Start/End: Original strand, 9062193 - 9062257
Alignment:
Q  17 aggtttgtgggaaaggttgaattgataaagaatgaagctgcacccatttttatggctcattttga 81  Q
    |||| ||||| ||||||||||||||||| |||||  |||||||||||||||||  ||||||||||    
T  9062193 aggtctgtggcaaaggttgaattgataatgaatggggctgcacccatttttatctctcattttga 9062257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 246 - 285
Target Start/End: Complemental strand, 9318401 - 9318362
Alignment:
Q  246 atttccattatctttaaattccaaactcttacaacatgct 285  Q
    ||||||||||||||||||||||||||| ||||||||||||    
T  9318401 atttccattatctttaaattccaaacttttacaacatgct 9318362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 84
Target Start/End: Complemental strand, 9273222 - 9273156
Alignment:
Q  18 ggtttgtgggaaaggttgaattgataaagaatgaagctgcacccatttttatggctcattttgaatt 84  Q
    |||||| | |||||||||||||||||| ||||| ||||||| |||||||| |  |||||||||||||    
T  9273222 ggtttgcgagaaaggttgaattgataatgaatggagctgcatccatttttgtctctcattttgaatt 9273156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 99
Target Start/End: Complemental strand, 9326580 - 9326501
Alignment:
Q  18 ggtttgtgggaaaggttgaattgataaagaatgaagctgcacccatttttatggctcattttgaattttgtctaatatcaca 99  Q
    |||||||| || ||||||||| ||||| ||||| |||||||| |||||||||  ||||||||||||| ||||| | ||||||    
T  9326580 ggtttgtgcgataggttgaatggataatgaatggagctgcactcatttttat--ctcattttgaattatgtctgagatcaca 9326501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 18 - 67
Target Start/End: Complemental strand, 9315238 - 9315189
Alignment:
Q  18 ggtttgtgggaaaggttgaattgataaagaatgaagctgcacccattttt 67  Q
    |||||||||||| |||||||||||||| ||||| |||||||| |||||||    
T  9315238 ggtttgtgggaatggttgaattgataatgaatggagctgcactcattttt 9315189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 84
Target Start/End: Original strand, 7117029 - 7117095
Alignment:
Q  18 ggtttgtgggaaaggttgaattgataaagaatgaagctgcacccatttttatggctcattttgaatt 84  Q
    ||||||| |||| ||||||||| |||| ||||| |||||  |||||||||||  |||||||||||||    
T  7117029 ggtttgttggaatggttgaattaataatgaatggagctgtgcccatttttatctctcattttgaatt 7117095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 67
Target Start/End: Original strand, 8574481 - 8574530
Alignment:
Q  18 ggtttgtgggaaaggttgaattgataaagaatgaagctgcacccattttt 67  Q
    ||||||||| |||||||||||| | || ||||| ||||||||||||||||    
T  8574481 ggtttgtggaaaaggttgaatttacaatgaatggagctgcacccattttt 8574530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 230
Target Start/End: Original strand, 8576363 - 8576392
Alignment:
Q  201 tatgaaagcacaatgaggttggttattgta 230  Q
    ||||||||||||||||||||||||||||||    
T  8576363 tatgaaagcacaatgaggttggttattgta 8576392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 18 - 84
Target Start/End: Complemental strand, 37461564 - 37461498
Alignment:
Q  18 ggtttgtgggaaaggttgaattgataaagaatgaagctgcacccatttttatggctcattttgaatt 84  Q
    |||||||||| |||||||||||||||| ||||| |||||||| ||||| |||  |||||||||||||    
T  37461564 ggtttgtgggtaaggttgaattgataatgaatggagctgcacgcatttgtatttctcattttgaatt 37461498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 133 - 169
Target Start/End: Complemental strand, 37461463 - 37461427
Alignment:
Q  133 tccctatggcctttctaaatggatcttctgcttttat 169  Q
    ||||| ||||||||||||| |||||||||||||||||    
T  37461463 tccctctggcctttctaaacggatcttctgcttttat 37461427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0667 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0667
Description:

Target: scaffold0667; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 246 - 285
Target Start/End: Complemental strand, 1451 - 1412
Alignment:
Q  246 atttccattatctttaaattccaaactcttacaacatgct 285  Q
    ||||||||||||| ||||||||||||| ||||||||||||    
T  1451 atttccattatctctaaattccaaacttttacaacatgct 1412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University