View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9653_low_31 (Length: 361)

Name: NF9653_low_31
Description: NF9653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9653_low_31
NF9653_low_31
[»] chr6 (1 HSPs)
chr6 (245-357)||(636340-636452)
[»] chr4 (2 HSPs)
chr4 (185-243)||(33447517-33447575)
chr4 (202-243)||(5482472-5482513)
[»] chr8 (1 HSPs)
chr8 (202-243)||(2680798-2680839)
[»] chr2 (1 HSPs)
chr2 (202-243)||(45004224-45004265)


Alignment Details
Target: chr6 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 245 - 357
Target Start/End: Original strand, 636340 - 636452
Alignment:
Q  245 ggcaaagcttctgaaaagtttaagaattaaatttcaaaatactcgcagcattacaaaatcattttaactacctttcctaaaaatacgagtgnnnnnnntt 344  Q
    ||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||       ||    
T  636340 ggcaaagcttctgaaaattttaagaattgaatttcaaaatactcgcagcattacaaaatcattttaacttcctttcctaaaaatacgagtggaaaaaatt 636439  T
Q  345 gatataacaccaa 357  Q
    |||||||||||||    
T  636440 gatataacaccaa 636452  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 185 - 243
Target Start/End: Original strand, 33447517 - 33447575
Alignment:
Q  185 ttgatttagtttttaatttatgaaaactccacagcttataaacaataactcctaactca 243  Q
    |||||||||||| ||| |||||||||||||||| ||||||||||| || ||| ||||||    
T  33447517 ttgatttagtttctaacttatgaaaactccacatcttataaacaacaattccaaactca 33447575  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 243
Target Start/End: Original strand, 5482472 - 5482513
Alignment:
Q  202 ttatgaaaactccacagcttataaacaataactcctaactca 243  Q
    |||||||||||||||| |||||||||||||| ||| ||||||    
T  5482472 ttatgaaaactccacatcttataaacaataattccaaactca 5482513  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 243
Target Start/End: Complemental strand, 2680839 - 2680798
Alignment:
Q  202 ttatgaaaactccacagcttataaacaataactcctaactca 243  Q
    |||||||||||||||| |||||||||||||| ||| ||||||    
T  2680839 ttatgaaaactccacatcttataaacaataattccaaactca 2680798  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 243
Target Start/End: Complemental strand, 45004265 - 45004224
Alignment:
Q  202 ttatgaaaactccacagcttataaacaataactcctaactca 243  Q
    |||||||||||||||| |||||||||||||| ||| ||||||    
T  45004265 ttatgaaaactccacatcttataaacaataattccaaactca 45004224  T

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