View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9653_low_38 (Length: 299)
Name: NF9653_low_38
Description: NF9653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9653_low_38 |
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Alignment Details
Target: chr2 (Bit Score: 156; Significance: 7e-83; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 18 - 201
Target Start/End: Complemental strand, 13946140 - 13945954
Alignment:
| Q |
18 |
aatagagga-cgttgaaacgctcgaaatattttgtgagcaacattccatattgaacaatattgtttttgtatttggagtttgaggcaatgatcatgtgtt |
116 |
Q |
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| T |
13946140 |
aatagaggaacgttgaaacgctcgaaatattttgtgagcaacattccatattgaacaatattgtttttgtatttggagtttgaggcaatgatcatgtgtt |
13946041 |
T |
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| Q |
117 |
ggaggattatgtgggcagga--tttatttttgttttagtagcgacgtgatgcatgagaagtaaatcgttgtcagtaaccttttattt |
201 |
Q |
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| T |
13946040 |
ggaggattatgtgggcaagattttttttttttttttagtagcgacgtgatgcatgagaagtaaatcgttgtcagtaaccttttattt |
13945954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 18 - 201
Target Start/End: Complemental strand, 14087329 - 14087143
Alignment:
| Q |
18 |
aatagagga-cgttgaaacgctcgaaatattttgtgagcaacattccatattgaacaatattgtttttgtatttggagtttgaggcaatgatcatgtgtt |
116 |
Q |
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| T |
14087329 |
aatagaggaacgttgaaacgctcgaaatattttgtgagcaacattccatattgaacaatattgtttttgtatttggagtttgaggcaatgatcatgtgtt |
14087230 |
T |
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| Q |
117 |
ggaggattatgtgggcagga--tttatttttgttttagtagcgacgtgatgcatgagaagtaaatcgttgtcagtaaccttttattt |
201 |
Q |
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| T |
14087229 |
ggaggattatgtgggcaagattttttttttttttttagtagcgacgtgatgcatgagaagtaaatcgttgtcagtaaccttttattt |
14087143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 201 - 287
Target Start/End: Complemental strand, 13945887 - 13945801
Alignment:
| Q |
201 |
tttggaggcaatggaaaattcatagattatttatgagttgatgttgaacatttatcagattaggtcggttttgcacttgatgtccat |
287 |
Q |
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| T |
13945887 |
tttggaggcaatggaaaattcatagattatttatgagttgatgttgaacatttatcagattaggtcggttttgcacttgatttccat |
13945801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 201 - 287
Target Start/End: Complemental strand, 14087076 - 14086990
Alignment:
| Q |
201 |
tttggaggcaatggaaaattcatagattatttatgagttgatgttgaacatttatcagattaggtcggttttgcacttgatgtccat |
287 |
Q |
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| T |
14087076 |
tttggaggcaatggaaaattcatagattatttatgagttgatgttgaacatttatcagattaggtcggttttgcacttgatttccat |
14086990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 79 - 117
Target Start/End: Original strand, 27743829 - 27743867
Alignment:
| Q |
79 |
gtttttgtatttggagtttgaggcaatgatcatgtgttg |
117 |
Q |
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| T |
27743829 |
gtttttgtatttggaatttgaggcaatgatcatgtgttg |
27743867 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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