View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9653_low_40 (Length: 282)
Name: NF9653_low_40
Description: NF9653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9653_low_40 |
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Alignment Details
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 19 - 262
Target Start/End: Original strand, 45591255 - 45591501
Alignment:
| Q |
19 |
gaatcctccaccaccacctgcttcttcaactgagactactactactcctctccctgaggctccaaagaaagatgtagctgaggagaaatctgtaattcca |
118 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45591255 |
gaatcctccaccaccacctgcttc---aactgagactactactactcctctccctgaggctccaaagaaagatgtagctgaggagaaatctgtaattcca |
45591351 |
T |
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| Q |
119 |
caagataacaatcct------cctcctccagttgttgatgactccaaagctcttgtcatagttcagagtatgacactaaaatatatacatattcttctaa |
212 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45591352 |
caagataacaatcctcctcctcctcctccagttgttgatgactccaaagctcttgtcatagttcagagtatgacactaaaatatatacatattcttctaa |
45591451 |
T |
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| Q |
213 |
attcatgtgtttatattttattggttgcgtaggaaacaattttatcatag |
262 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45591452 |
attcatgtgtttatattttattggttgcgtaggaaacaattttatcatag |
45591501 |
T |
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