View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9653_low_41 (Length: 261)
Name: NF9653_low_41
Description: NF9653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9653_low_41 |
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Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 8 - 246
Target Start/End: Complemental strand, 33385100 - 33384859
Alignment:
| Q |
8 |
tggtggtccaatgctctcttgtgcatgctg---aagtttcatgttatatattagttgatcattatttggtacaattgtatgttggtttttggtctgttgt |
104 |
Q |
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| T |
33385100 |
tggtgatccaatgctctcttgtgcatgctgctgaagtttcatgttatatattagttgatcattatttggtacaattgtatgttggtttttggtctgttgt |
33385001 |
T |
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| Q |
105 |
atttttgcactagtgtaacaattattactgctaatatgctatgcagagctgatatgtgcaaatgtacaatcattctactataaatggcttatgttagttt |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
33385000 |
atttttgcactagtgtaacaattattactgctaatatgctatgcagagctgatatgtgcaaatgtacaatcattctactaaaaatggcttatgttagttt |
33384901 |
T |
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| Q |
205 |
ctagatgttgtgattcaaatcacaattgtaggtgtgatatgt |
246 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
33384900 |
ctagatgttgtgattcaaatcacaattgtaggtgtgatatgt |
33384859 |
T |
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