View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9653_low_42 (Length: 257)
Name: NF9653_low_42
Description: NF9653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9653_low_42 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 147; Significance: 1e-77; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 83 - 257
Target Start/End: Complemental strand, 45591747 - 45591573
Alignment:
| Q |
83 |
aactacaccaaataaaaactatgtattgatattannnnnnnnactcatgcaaactactcgttgaaaaaatcaattatggggaaaatttgaagatggaaaa |
182 |
Q |
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| T |
45591747 |
aactacaccaaataaaaactatgtattgatattattttttttactcatgtaaactactcgttgaaaaaatcaattatggggaaaatttgaagatggaaaa |
45591648 |
T |
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| Q |
183 |
ttactcacgaatgaaagttctcttttatattaaaatcatcatgaaactaaaacgtaaaatttaaagtggtcacct |
257 |
Q |
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| T |
45591647 |
ttactcacgaatgaaagttctcttttatattaaaatcatcatgaaactaaaacgtaaaatttaaagtggtcacct |
45591573 |
T |
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Target: chr1; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 15 - 84
Target Start/End: Complemental strand, 45591861 - 45591792
Alignment:
| Q |
15 |
cagagactataagacaaagaaagacaaattttagaccttaaattcaattttgctattaaaactgcagaaa |
84 |
Q |
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| T |
45591861 |
cagagactataagacaaagaaagacaaattttagaccttacattcaattttgctattaaaactgcagaaa |
45591792 |
T |
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