View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9653_low_45 (Length: 253)
Name: NF9653_low_45
Description: NF9653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9653_low_45 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 169; Significance: 1e-90; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 65 - 253
Target Start/End: Original strand, 14457228 - 14457416
Alignment:
| Q |
65 |
ctggtagtttatccgttataagttcactgatggataataagtttatatcgaattacttatgagttagtttattatccgctatgttttgccaaatagagct |
164 |
Q |
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| T |
14457228 |
ctggtagtttatccgttataagttcacttatggataataagtttatatcgaattacttatgagttagtttattatccgctgtgttttgccaaatagagct |
14457327 |
T |
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| Q |
165 |
ctaagacactctcgctaataaataattagaacattttatttcttttacaattttatgaatcaatttctctaagagaacgcatgattgtt |
253 |
Q |
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| T |
14457328 |
ctaagacactctcgctaataaataattagaacattttatttcatttacaattttatgaataaatttctctaagagaacacatgattgtt |
14457416 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 12 - 66
Target Start/End: Original strand, 14456016 - 14456070
Alignment:
| Q |
12 |
agcaaaggcgatgagggttttaaacacttgggtgattaaaattgttgtgcttact |
66 |
Q |
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| T |
14456016 |
agcagaggcgatgagggttttaaaaacttgggtgattaaaattgttgtggttact |
14456070 |
T |
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Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 17 - 69
Target Start/End: Original strand, 49235189 - 49235241
Alignment:
| Q |
17 |
aggcgatgagggttttaaacacttgggtgattaaaattgttgtgcttactggt |
69 |
Q |
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| T |
49235189 |
aggcgatgaaggttttaaaaacttgggtgattaaaattgttgtgcttactggt |
49235241 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 17 - 66
Target Start/End: Original strand, 33619470 - 33619519
Alignment:
| Q |
17 |
aggcgatgagggttttaaacacttgggtgattaaaattgttgtgcttact |
66 |
Q |
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| T |
33619470 |
aggcgatgagggttttaacaacttgggtgaatgaaattgttgtgcttact |
33619519 |
T |
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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 61
Target Start/End: Original strand, 39741988 - 39742032
Alignment:
| Q |
17 |
aggcgatgagggttttaaacacttgggtgattaaaattgttgtgc |
61 |
Q |
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| T |
39741988 |
aggcgatgagggttttaacaacttgggtgaatgaaattgttgtgc |
39742032 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 61
Target Start/End: Original strand, 6898446 - 6898490
Alignment:
| Q |
17 |
aggcgatgagggttttaaacacttgggtgattaaaattgttgtgc |
61 |
Q |
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| T |
6898446 |
aggcgatgagggttttaacaacttgggtgaatgaaattgttgtgc |
6898490 |
T |
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