View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9653_low_47 (Length: 252)
Name: NF9653_low_47
Description: NF9653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9653_low_47 |
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Alignment Details
Target: chr2 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 31908190 - 31908431
Alignment:
| Q |
1 |
tagagtctacaaaacatgtggaaattaaattacaagaatataaactctaaaactggacatttaacactgtgacccgactccaattagcttcaaaatagtt |
100 |
Q |
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| T |
31908190 |
tagagtttacaaaacatgtggaaattaaattacaagaatataaactctaaaactggacatttaacactgtgacccgactccaattagcttcaaaatagtt |
31908289 |
T |
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| Q |
101 |
tatacctgaaaaaggtaaaatcaatgtgggatgagatactttagtgagttctcaaattcagaataaaacataatatgtcacgtataaaaaatgttagtat |
200 |
Q |
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| T |
31908290 |
tatacctgaaaa-ggtgaaatcaatgtgggatgagatactttagtgagttctcaaattcagaataaaacataatatgtcacgtataaaaaatgttagtat |
31908388 |
T |
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| Q |
201 |
agttttggaggattatgatcagatgaatatcatggcaaatcat |
243 |
Q |
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| T |
31908389 |
acttttggaggattatgatcagatgaatatcatggtaaatcat |
31908431 |
T |
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Back To:
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Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 38 - 113
Target Start/End: Original strand, 12845095 - 12845169
Alignment:
| Q |
38 |
atataaactctaaaactggacatttaacactgtgacccgactccaattagcttcaaaatagtttatacctgaaaaa |
113 |
Q |
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| T |
12845095 |
atataaactctaaaactagacatttgacagtgtgatccgactctgattaacttcaaaaga-tttatacctaaaaaa |
12845169 |
T |
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