View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9653_low_5 (Length: 567)
Name: NF9653_low_5
Description: NF9653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9653_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 487; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 487; E-Value: 0
Query Start/End: Original strand, 19 - 556
Target Start/End: Original strand, 14644709 - 14645244
Alignment:
| Q |
19 |
tgaatgtcataacccgtgttgatatttaaaaccaacacgtgttagtcaggcgcacattcaatcagaagtgtcttccaacatagctagtaagccgaatcag |
118 |
Q |
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| T |
14644709 |
tgaatgtcataacccgtgttgatatttaaaaccaacacgtgttagtcaggcgcacattcaatcagaagtgtcttccaacatagctagtaagccgaatcag |
14644808 |
T |
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| Q |
119 |
aagatagaatcacagaatcagcggnnnnnnnntaatgtattgaacaaagaaaattagtctccttaaacaaccatcaatccattctgtgtttaagcaagac |
218 |
Q |
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| T |
14644809 |
aagatcgaatcacagaatcagcggaaaaaaaataatgtattgaacaaagaaaattagtctccttaaacaaccatcaagccatt--gtgtttaagcaagac |
14644906 |
T |
|
| Q |
219 |
tatgtatacctacttctcagataacaaaaaccagttatgaagtttttctaaaatgtaaatttcatggtgtctttaacaatagcataatcatcctcttaat |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14644907 |
tatgtatacctacttctcagataacaaaaaccagttatgaagtttttctaaaatgtaaatttcatggtgtctttaacaatagcataatcatcctcttaat |
14645006 |
T |
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| Q |
319 |
ataattttagttatcaatattatcaaaccaatatagaaacaccatagtgtacacgcctcaaagcatctcattagttagtctttggttgtatacttgcata |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
14645007 |
ataattttagttatcaatattatcaaaccaatatagaaacaccatagtgtacacgcctcaaagcatctcattagttagtcattggttgtatacttgcata |
14645106 |
T |
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| Q |
419 |
gcaagtaaagtacatagagtgtatataaatatcatgtaaactaagtttgctaataaaatttacatcttcataatcatatcagcaaatctaaagcttgcag |
518 |
Q |
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| T |
14645107 |
gcaagtaaagtacatagagtgtatataaatatcatgtaaactaagtttgctaataaaaattacatcttcataatcatatcagcaaatctaaagcttgcag |
14645206 |
T |
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| Q |
519 |
tgaaaacaatcactactaagctaataaacagtataatc |
556 |
Q |
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| T |
14645207 |
tgaaaacaatcactactaagctaataaacagtataatc |
14645244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 433 - 465
Target Start/End: Original strand, 14664639 - 14664671
Alignment:
| Q |
433 |
tagagtgtatataaatatcatgtaaactaagtt |
465 |
Q |
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| T |
14664639 |
tagagtgtatataaatatcatgtaaactcagtt |
14664671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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