View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9653_low_53 (Length: 243)
Name: NF9653_low_53
Description: NF9653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9653_low_53 |
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Alignment Details
Target: chr5 (Bit Score: 177; Significance: 2e-95; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 19 - 232
Target Start/End: Original strand, 42741426 - 42741637
Alignment:
| Q |
19 |
ataaccgagaacgtatgattcaatattctttacttatttcttgaaactatttagaagtgaattcacctcctcgaccagtcctcgtaacttttatatgctg |
118 |
Q |
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| T |
42741426 |
ataaccgagaacgtatgattcaatattctttacttatttcttgaaactatttagaagtgaattcacctcctcgaccagtcctcgtaacttttatatgctg |
42741525 |
T |
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| Q |
119 |
accacttactttcgtgacaacatctttgaacttccttgaaggtagtaaaggcatttggattaagatattacatacnnnnnnnnctttcacgagaattttt |
218 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| |
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| T |
42741526 |
accacttcctttcgtgacaacatctttgaacttccttgaaggtagtaaaggcatttggattaagatattacatac--ttttttctttcatgagaattttt |
42741623 |
T |
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| Q |
219 |
acatcaccaccaaa |
232 |
Q |
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|||||||||||||| |
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| T |
42741624 |
acatcaccaccaaa |
42741637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 19 - 232
Target Start/End: Original strand, 21745546 - 21745761
Alignment:
| Q |
19 |
ataaccgagaacgtatgattcaatattctttacttatttcttgaaactatttagaagtgaattcacctcctcgaccagtcctcgtaacttttatatgctg |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21745546 |
ataaccgagaacgtatgattcaatattctttacttatttcttgaaactatttagaagtgaattcacctcctcgaccagtcctcgtaacttttatatgctg |
21745645 |
T |
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| Q |
119 |
accacttactttcgtgacaacatctttgaacttccttgaagg----tagtaaaggcatttggattaagatattacatacnnnnnnnnctttcacgagaat |
214 |
Q |
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||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| |||||| |
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| T |
21745646 |
accacttcctttcgtgacaacatctttgaacttccttgaaggtaaatagtaaaggcatttggattaagatattacatac--ttttttctttcatgagaat |
21745743 |
T |
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| Q |
215 |
ttttacatcaccaccaaa |
232 |
Q |
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|||||||||||||||||| |
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| T |
21745744 |
ttttacatcaccaccaaa |
21745761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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