View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9653_low_56 (Length: 242)
Name: NF9653_low_56
Description: NF9653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9653_low_56 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 18 - 242
Target Start/End: Complemental strand, 36290881 - 36290657
Alignment:
| Q |
18 |
aatctaaggcgtctcaacattgccaaagaaggaattcagcttccaacaattgttgttgttggagatcaatcttcaggaaagtccagtgtccttgaatctt |
117 |
Q |
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| T |
36290881 |
aatctaaggcgtctcaacattgccaaagaaggaattcagcttccaacaattgttgttgttggagatcaatcttcaggaaagtccagtgtccttgaatctt |
36290782 |
T |
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| Q |
118 |
tagctggtatcagcttgccacgtggacaaggaatctgcacaagagtacccttaattatgcgccttcagaatcatccactttcaaaaccagaactcttgtt |
217 |
Q |
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| T |
36290781 |
tagctggtatcagcttgccacgtggacaaggaatctgcacgagagtacccttaattatgcgccttcagaatcatccactttcaaaaccagaactcttgtt |
36290682 |
T |
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| Q |
218 |
agaattcaatagcaaaacagttttc |
242 |
Q |
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|||||||||| |||||||||||||| |
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| T |
36290681 |
agaattcaatggcaaaacagttttc |
36290657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 17 - 166
Target Start/End: Complemental strand, 36313365 - 36313216
Alignment:
| Q |
17 |
aaatctaaggcgtctcaacattgccaaagaaggaattcagcttccaacaattgttgttgttggagatcaatcttcaggaaagtccagtgtccttgaatct |
116 |
Q |
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|||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||| || |||||||| |||||||||||||| |
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| T |
36313365 |
aaatctaaggcgtctcaacattgccaaagagggaatccagcttccaaccattgttgttgttggagatcaatcatctggaaagtctagtgtccttgaatca |
36313266 |
T |
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| Q |
117 |
ttagctggtatcagcttgccacgtggacaaggaatctgcacaagagtacc |
166 |
Q |
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| T |
36313265 |
ttagctggtatcagcttgccacgtggacaaggaatttgtacaagggtacc |
36313216 |
T |
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