View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9653_low_57 (Length: 240)
Name: NF9653_low_57
Description: NF9653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9653_low_57 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 31907874 - 31908096
Alignment:
| Q |
18 |
cttcttgtgtttatacgcatgttgtgacttaatttttaagaaacttaatgttaatttggatcagccaataaatcccaataactaaataagtgaaattatt |
117 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
31907874 |
cttcttgtgtttatacgcatgttatgacttaatttttaagaaacttaatgttaatttggatcagccaataaagcccaataactaaataagtgaaattatt |
31907973 |
T |
|
| Q |
118 |
catatccacacttagtgattcggtaattgaattacgcgactcgtggctcttagcatgcgacacaaattgagtcgtgacaagacaatgtaacaaccgggga |
217 |
Q |
| |
|
||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
31907974 |
catatccacacttagtgattccgtaactgaattacgcgactcgtggctcttagcatgcgacgcaaattgagtcgtgacaagacaatgtaacaatcggggt |
31908073 |
T |
|
| Q |
218 |
tcttaattcaaagattttctgat |
240 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
31908074 |
tcttaattcaaagattttctgat |
31908096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University